Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000453

Physical Location & Seq

Genomic Coordinates Reverse (-)

47410179 .. 47410724

Gene Structure 546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG419100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGTGACAATATATCCTAACAACATCCACCGCCTCAGGTCCAGCATGAAGATCACTACCGTCGTGCCGGCAACAGTGACCGGTGGCAAGGTCCATGAGCTGACCAACATGGACTTGGCGATGAAGCTACACTACATCAAAGGGGTCTACTTTTTCAACGGTGATGCAGTCGAGGGGCTTACGATGTATGACTTGAAGAAGCCTATGTTTCAATTGCTCCAACTCTACTTCCCTGCCGCCGGGAGAATCCGAAGATCTGAAACAGGTCGGCCTTTCATCACGTGTAACGACGGTGGTGTGAGGATTGTGGAGGCACGTTGTGACGAAACCGTCGATGAATGGTTGGCTATGGCTGTGGAGGATGATTCTGCTTTTGATGGTCTTGTTTATAACCAAGCACTTGGTGATCCTGATCTTGGTTTCTCTCCTTTGATCTTTCTACAGGTTAAACCAATAGCTCACTATTCTTCTGCAGTATGGAAACTGCATGTATATCACAAACTTAGAGGTTCTATCTATAGAATGTTGCAGCTTATAGATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009555 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016053 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048229 GO:0048856 GO:0071704 GO:0072330 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

181

Amino Acids

20.52

Weight (kDa)

7.01

Isoelectric Point (pI)

41.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	17 - 149	1.4e-17	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24510
fragaria_vesca	FvH4_5g34840 FvH4_5g34850
malus_domestica	MD08G1199200.v1.1 MD08G1199300.v1.1 MD15G1386300.v1.1 MD15G1386800.v1.1
prunus_persica	Prupe.1G533000_v2.0.a1
pyrus_communis	pycom08g17310 pycom15g34640 pycom15g34680
rosa_chinensis	RchiOBHm_Chr1g0364531 RchiOBHm_Chr4g0415781 RchiOBHm_Chr7g0232591 RchiOBHm_Chr7g0235521 RchiOBHm_Chr7g0235551 RchiOBHm_Chr7g0235561 RchiOBHm_Chr7g0235611 RchiOBHm_Chr7g0235721 RchiOBHm_Chr7g0235771
rosa_laevigata	RLG00000001141 RLG00000001147 RLG00000001148 RLG00000001151 RLG00000001152 RLG00000001321 RLG00000029743
rosa_multiflora	Rmu_co8320053.1_g000001 Rmu_co8402261.1_g000001 Rmu_co8447535.1_g000001 Rmu_sc0001912.1_g000001 Rmu_sc0001912.1_g000003 Rmu_sc0002617.1_g000016 Rmu_sc0002617.1_g000017 Rmu_sc0002892.1_g000022 Rmu_sc0002892.1_g000023 Rmu_sc0002892.1_g000041 Rmu_sc0002892.1_g000042 Rmu_sc0007994.1_g000006 Rmu_sc0010963.1_g000008 Rmu_sc0011151.1_g000005 Rmu_sc0012467.1_g000003 Rmu_ssc0000471.1_g000012 Rmu_ssc0000471.1_g000013
rosa_roxburghii	Rroxscaffold_3G00225680 Rroxscaffold_3G00225800 Rroxscaffold_3G00225870 Rroxscaffold_3G00228130 Rroxscaffold_6G00391050
rosa_rugosa	Rorug07G0275200 Rorug07G0291500.1 Rorug07G0292000 Rorug07G0292200 Rorug07G0292500 Rorug07G0295900
rosa_samantha	Rh7AG430000 Rh7AG446600 Rh7AG446800 Rh7AG447200 Rh7AG447300 Rh7AG447500 Rh7BG403500 Rh7BG418300 Rh7BG418400 Rh7BG418800 Rh7BG419000 Rh7BG419100 Rh7BG419300 Rh7BG419400 Rh7BG419500 Rh7BG419700 Rh7CG448700 Rh7CG466600 Rh7CG467000 Rh7CG467200 Rh7CG467300 Rh7CG467400 Rh7CG467500 Rh7CG468000 Rh7DG419700 Rh7DG435300 Rh7DG435400 Rh7DG435500 Rh7DG435600 Rh7DG436000 Rh7DG436500
rosa_wichuraiana	Rw0G011890 Rw7G035510 Rw7G037080 Rw7G037090 Rw7G037110 Rw7G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	390
AasI	GACNNNNNNGTC	1 cut(s)	329
AccI	GTMKAC	1 cut(s)	147
AciI	CCGC	2 cut(s)	31, 237
AclWI	GGATC	1 cut(s)	401
AcvI	CACGTG	1 cut(s)	282
AdeI	CACNNNGTG	2 cut(s)	320, 404
AfiI	CCNNNNNNNGG	2 cut(s)	239, 416
AflIII	ACRYGT	1 cut(s)	281
AgeI	ACCGGT	1 cut(s)	80
AgsI	TTSAA	3 cut(s)	157, 196, 212
AluBI	AGCT	4 cut(s)	100, 127, 458, 532
AluI	AGCT	4 cut(s)	100, 127, 458, 532
AlwI	GGATC	1 cut(s)	401
AoxI	GGCC	1 cut(s)	269
ApeKI	GCWGC	1 cut(s)	529
AsiGI	ACCGGT	1 cut(s)	80
AspS9I	GGNCC	2 cut(s)	39, 91
AsuC2I	CCSGG	1 cut(s)	241
AsuHPI	GGTGA	3 cut(s)	16, 173, 416
AvaII	GGWCC	2 cut(s)	39, 91
AxyI	CCTNAGG	1 cut(s)	35
BarI	GAAGNNNNNNTAC	2 cut(s)	116, 148
BbrPI	CACGTG	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	541
BccI	CCATC	1 cut(s)	371
BcnI	CCSGG	1 cut(s)	241
BfmI	CTRYAG	3 cut(s)	440, 471, 517
BglII	AGATCT	1 cut(s)	254
BisI	GCNGC	2 cut(s)	237, 530
BlsI	GCNGC	2 cut(s)	238, 531
Bme1390I	CCNGG	1 cut(s)	241
Bme18I	GGWCC	2 cut(s)	39, 91
BmgT120I	GGNCC	2 cut(s)	39, 91
BmrFI	CCNGG	1 cut(s)	241
BmsI	GCATC	1 cut(s)	154
BpuMI	CCSGG	1 cut(s)	241
BsaAI	YACGTR	1 cut(s)	282
BsaBI	GATNNNNATC	1 cut(s)	411
BsaWI	WCCGGW	1 cut(s)	80
Bsc4I	CCNNNNNNNGG	2 cut(s)	239, 416
Bse118I	RCCGGY	2 cut(s)	67, 80
Bse21I	CCTNAGG	1 cut(s)	35
Bse8I	GATNNNNATC	1 cut(s)	411
BseGI	GGATG	2 cut(s)	24, 367
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	2 cut(s)	239, 416
BseMII	CTCAG	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	541
BshFI	GGCC	1 cut(s)	271
BshTI	ACCGGT	1 cut(s)	80
BsiSI	CCGG	3 cut(s)	68, 81, 240
BslI	CCNNNNNNNGG	2 cut(s)	239, 416
BsnI	GGCC	1 cut(s)	271
Bsp143I	GATC	5 cut(s)	51, 254, 406, 412, 432
BspACI	CCGC	2 cut(s)	31, 237
BspANI	GGCC	1 cut(s)	271
BspCNI	CTCAG	1 cut(s)	48
BspMAI	CTGCAG	1 cut(s)	475
BspPI	GGATC	1 cut(s)	401
BsrFI	RCCGGY	2 cut(s)	67, 80
BssAI	RCCGGY	2 cut(s)	67, 80
BssMI	GATC	5 cut(s)	51, 254, 406, 412, 432
Bst4CI	ACNGT	5 cut(s)	61, 76, 161, 293, 331
BstBAI	YACGTR	1 cut(s)	282
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	2 cut(s)	35, 503
BstF5I	GGATG	2 cut(s)	24, 367
BstKTI	GATC	5 cut(s)	54, 257, 409, 415, 435
BstMBI	GATC	5 cut(s)	51, 254, 406, 412, 432
BstNSI	RCATGY	1 cut(s)	491
BstSCI	CCNGG	1 cut(s)	239
BstSFI	CTRYAG	3 cut(s)	440, 471, 517
BstV1I	GCAGC	1 cut(s)	541
BstX2I	RGATCY	1 cut(s)	254
BstXI	CCANNNNNNTGG	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	254
Bsu36I	CCTNAGG	1 cut(s)	35
BsuRI	GGCC	1 cut(s)	271
BtgZI	GCGATG	1 cut(s)	134
BtsCI	GGATG	2 cut(s)	24, 367
BtsIMutI	CAGTG	1 cut(s)	81
Cac8I	GCNNGC	1 cut(s)	69
Cfr10I	RCCGGY	2 cut(s)	67, 80
Cfr13I	GGNCC	2 cut(s)	39, 91
CspAI	ACCGGT	1 cut(s)	80
CviAII	CATG	4 cut(s)	46, 95, 109, 488
CviJI	RGCY	9 cut(s)	100, 127, 178, 202, 271, 347, 353, 458, 532
CviKI_1	RGCY	9 cut(s)	100, 127, 178, 202, 271, 347, 353, 458, 532
DdeI	CTNAG	2 cut(s)	35, 503
DpnI	GATC	5 cut(s)	53, 256, 408, 414, 434
DpnII	GATC	5 cut(s)	51, 254, 406, 412, 432
DraIII	CACNNNGTG	2 cut(s)	320, 404
DrdI	GACNNNNNNGTC	1 cut(s)	329
DseDI	GACNNNNNNGTC	1 cut(s)	329
Eco47I	GGWCC	2 cut(s)	39, 91
Eco72I	CACGTG	1 cut(s)	282
Eco81I	CCTNAGG	1 cut(s)	35
FaeI	CATG	4 cut(s)	49, 98, 112, 491
FatI	CATG	4 cut(s)	45, 94, 108, 487
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	2 cut(s)	237, 530
FokI	GGATG	2 cut(s)	11, 374
Fsp4HI	GCNGC	2 cut(s)	237, 530
GluI	GCNGC	2 cut(s)	237, 530
HaeIII	GGCC	1 cut(s)	271
HapII	CCGG	3 cut(s)	68, 81, 240
Hin1II	CATG	4 cut(s)	49, 98, 112, 491
HinfI	GANTC	2 cut(s)	246, 365
HpaII	CCGG	3 cut(s)	68, 81, 240
HphI	GGTGA	3 cut(s)	16, 173, 416
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	2 cut(s)	251, 259
Hpy188III	TCNNGA	1 cut(s)	410
Hpy8I	GTNNAC	1 cut(s)	148
Hpy99I	CGWCG	3 cut(s)	65, 293, 335
HpyCH4III	ACNGT	5 cut(s)	61, 76, 161, 293, 331
HpyCH4IV	ACGT	2 cut(s)	281, 316
HpyCH4V	TGCA	4 cut(s)	167, 473, 487, 529
HpyF3I	CTNAG	2 cut(s)	35, 503
HpySE526I	ACGT	2 cut(s)	281, 316
Hsp92II	CATG	4 cut(s)	49, 98, 112, 491
KroI	GCCGGC	1 cut(s)	67
KroNI	GCCGGC	1 cut(s)	69
Kzo9I	GATC	5 cut(s)	51, 254, 406, 412, 432
LmnI	GCTCC	1 cut(s)	222
LpnPI	CCDG	9 cut(s)	22, 55, 81, 94, 246, 249, 253, 423, 428
Lsp1109I	GCAGC	1 cut(s)	541
LweI	GCATC	1 cut(s)	154
MaeII	ACGT	2 cut(s)	281, 316
MaeIII	GTNAC	4 cut(s)	4, 76, 284, 320
MalI	GATC	5 cut(s)	53, 256, 408, 414, 434
MboI	GATC	5 cut(s)	51, 254, 406, 412, 432
MboII	GAAGA	4 cut(s)	61, 208, 264, 459
MfeI	CAATTG	1 cut(s)	212
MflI	RGATCY	1 cut(s)	254
MluCI	AATT	2 cut(s)	212, 541
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	6 cut(s)	44, 166, 294, 304, 352, 500
MroNI	GCCGGC	1 cut(s)	67
MseI	TTAA	1 cut(s)	447
MspI	CCGG	3 cut(s)	68, 81, 240
MspR9I	CCNGG	1 cut(s)	241
MunI	CAATTG	1 cut(s)	212
NaeI	GCCGGC	1 cut(s)	69
NciI	CCSGG	1 cut(s)	241
NdeII	GATC	5 cut(s)	51, 254, 406, 412, 432
NgoMIV	GCCGGC	1 cut(s)	67
NlaIII	CATG	4 cut(s)	49, 98, 112, 491
NmuCI	GTSAC	3 cut(s)	4, 76, 320
NspI	RCATGY	1 cut(s)	491
PcsI	WCGNNNNNNNCGW	1 cut(s)	330
PdiI	GCCGGC	1 cut(s)	69
PfeI	GAWTC	2 cut(s)	246, 365
PinAI	ACCGGT	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	238, 531
PmaCI	CACGTG	1 cut(s)	282
PmlI	CACGTG	1 cut(s)	282
Ppu21I	YACGTR	1 cut(s)	282
PsiI	TTATAA	1 cut(s)	390
PspCI	CACGTG	1 cut(s)	282
PspPI	GGNCC	2 cut(s)	39, 91
PstI	CTGCAG	1 cut(s)	475
PsuI	RGATCY	1 cut(s)	254
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	2 cut(s)	237, 530
Sau3AI	GATC	5 cut(s)	51, 254, 406, 412, 432
Sau96I	GGNCC	2 cut(s)	39, 91
ScrFI	CCNGG	1 cut(s)	241
SfaNI	GCATC	1 cut(s)	154
SfcI	CTRYAG	3 cut(s)	440, 471, 517
SinI	GGWCC	2 cut(s)	39, 91
Sse9I	AATT	2 cut(s)	212, 541
SsiI	CCGC	2 cut(s)	31, 237
StyD4I	CCNGG	1 cut(s)	239
TaaI	ACNGT	5 cut(s)	61, 76, 161, 293, 331
TaiI	ACGT	2 cut(s)	284, 319
TaqI	TCGA	2 cut(s)	171, 333
TasI	AATT	2 cut(s)	212, 541
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	2 cut(s)	246, 365
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	1 cut(s)	81
TseFI	GTSAC	3 cut(s)	4, 76, 320
TseI	GCWGC	1 cut(s)	529
Tsp45I	GTSAC	3 cut(s)	4, 76, 320
TspDTI	ATGAA	4 cut(s)	62, 137, 265, 351
TspRI	CASTG	1 cut(s)	81
VpaK11BI	GGWCC	2 cut(s)	39, 91
XceI	RCATGY	1 cut(s)	491
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112
XmiI	GTMKAC	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.