Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000453

Physical Location & Seq

Genomic Coordinates Reverse (-)

47409118 .. 47409972

Gene Structure 855 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG419000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTCAGTGGGAATTAGCTGGGCACATGTTCTTGGAGATGCATTTTCAGCCTCAACCTTCATCAACCTGTGGGGGAAGATCATGGCAGGTCCCGTGCCACACAAGTCTCTGCACATACCAGACTCTGCAAAATCTGAGCTCCCACTTTCAGTACTTCCCAAGCTAAAACCAAATTCCCTTAGAAGGGTTGATTCAGTTGGTGATTTATGGCTTACACCAAACAACTGCAAGATGAAGATGCACACTTTTCATGTTCCTGCAGATAAAATTAATCATCTTCTCTCGGACCAAAGATCTAAGGTCTCGACTTTTGAAGTAATTTCTGCACTCATATGGAAATTTATGTCCAAGATCAAGAAAAACCCAGAAGAGACAAGGATGGTGACTCTCTGTACAAACAAATCTCATAAAAGAGAATTTGAGTTTTCAAGTAATGGGATGGTGTGGAGCACAGTTGAAGCGACTTTCTGGGTTGCAGAAGCTGAGGTCTTAGAGCTGGTGGAGCTAATATTGAACAAAAAGATAGATGAGAATGGCTTGATTACAGAAATGATGGGGAATAATTATAGTGAGGAGTTGTCTTCAGACTTCATAACATATGGGGCAAACTTGACGTTTGTGAATTTGGAAGATGCACAGATTTATGGGCTTGAATTGAAAGGGAAAATGCCAGTTTATGCAAATTATACCATTAGTGGAGTTGGTGATAAAGGAGTTGTTTTGGTGCTTCCAAGGCCAAACTATGGTAAAAAGGGTGATGGTGTTAATGGTGATCGAACTGTGACTGTGGTTCTGCCAGAAAATCAACTTACACAGTTGAAGGTTGAGCTCATAAGAAATTGGAACATTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009555 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016053 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048229 GO:0048856 GO:0071704 GO:0072330 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

284

Amino Acids

31.79

Weight (kDa)

7.06

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	1 - 274	8.1e-10	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24510
fragaria_vesca	FvH4_5g34840 FvH4_5g34850
malus_domestica	MD08G1199200.v1.1 MD08G1199300.v1.1 MD15G1386300.v1.1 MD15G1386800.v1.1
prunus_persica	Prupe.1G533000_v2.0.a1
pyrus_communis	pycom08g17310 pycom15g34640 pycom15g34680
rosa_chinensis	RchiOBHm_Chr1g0364531 RchiOBHm_Chr4g0415781 RchiOBHm_Chr7g0232591 RchiOBHm_Chr7g0235521 RchiOBHm_Chr7g0235551 RchiOBHm_Chr7g0235561 RchiOBHm_Chr7g0235611 RchiOBHm_Chr7g0235721 RchiOBHm_Chr7g0235771
rosa_laevigata	RLG00000001141 RLG00000001147 RLG00000001148 RLG00000001151 RLG00000001152 RLG00000001321 RLG00000029743
rosa_multiflora	Rmu_co8320053.1_g000001 Rmu_co8402261.1_g000001 Rmu_co8447535.1_g000001 Rmu_sc0001912.1_g000001 Rmu_sc0001912.1_g000003 Rmu_sc0002617.1_g000016 Rmu_sc0002617.1_g000017 Rmu_sc0002892.1_g000022 Rmu_sc0002892.1_g000023 Rmu_sc0002892.1_g000041 Rmu_sc0002892.1_g000042 Rmu_sc0007994.1_g000006 Rmu_sc0010963.1_g000008 Rmu_sc0011151.1_g000005 Rmu_sc0012467.1_g000003 Rmu_ssc0000471.1_g000012 Rmu_ssc0000471.1_g000013
rosa_roxburghii	Rroxscaffold_3G00225680 Rroxscaffold_3G00225800 Rroxscaffold_3G00225870 Rroxscaffold_3G00228130 Rroxscaffold_6G00391050
rosa_rugosa	Rorug07G0275200 Rorug07G0291500.1 Rorug07G0292000 Rorug07G0292200 Rorug07G0292500 Rorug07G0295900
rosa_samantha	Rh7AG430000 Rh7AG446600 Rh7AG446800 Rh7AG447200 Rh7AG447300 Rh7AG447500 Rh7BG403500 Rh7BG418300 Rh7BG418400 Rh7BG418800 Rh7BG419000 Rh7BG419100 Rh7BG419300 Rh7BG419400 Rh7BG419500 Rh7BG419700 Rh7CG448700 Rh7CG466600 Rh7CG467000 Rh7CG467200 Rh7CG467300 Rh7CG467400 Rh7CG467500 Rh7CG468000 Rh7DG419700 Rh7DG435300 Rh7DG435400 Rh7DG435500 Rh7DG435600 Rh7DG436000 Rh7DG436500
rosa_wichuraiana	Rw0G011890 Rw7G035510 Rw7G037080 Rw7G037090 Rw7G037110 Rw7G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	77
AccB7I	CCANNNNNTGG	1 cut(s)	743
AcsI	RAATTY	4 cut(s)	172, 338, 416, 622
AcuI	CTGAAG	1 cut(s)	567
AfaI	GTAC	2 cut(s)	153, 394
AfiI	CCNNNNNNNGG	3 cut(s)	183, 184, 743
AflIII	ACRYGT	1 cut(s)	25
AgsI	TTSAA	7 cut(s)	314, 429, 458, 514, 653, 658, 820
AluBI	AGCT	7 cut(s)	18, 139, 163, 482, 496, 505, 829
AluI	AGCT	7 cut(s)	18, 139, 163, 482, 496, 505, 829
Alw21I	GWGCWC	3 cut(s)	141, 452, 831
Alw26I	GTCTC	3 cut(s)	111, 307, 365
AlwNI	CAGNNNCTG	2 cut(s)	125, 482
AoxI	GGCC	1 cut(s)	734
ApoI	RAATTY	4 cut(s)	172, 338, 416, 622
AseI	ATTAAT	1 cut(s)	270
AspS9I	GGNCC	2 cut(s)	89, 286
AsuHPI	GGTGA	5 cut(s)	212, 394, 716, 767, 782
AvaII	GGWCC	2 cut(s)	89, 286
BaeGI	GKGCMC	1 cut(s)	25
BanII	GRGCYC	2 cut(s)	141, 831
BbsI	GAAGAC	1 cut(s)	573
Bbv12I	GWGCWC	3 cut(s)	141, 452, 831
BbvCI	CCTCAGC	1 cut(s)	483
BccI	CCATC	4 cut(s)	373, 433, 547, 752
BcoDI	GTCTC	3 cut(s)	111, 307, 365
BfmI	CTRYAG	1 cut(s)	258
BfuAI	ACCTGC	1 cut(s)	77
BglII	AGATCT	1 cut(s)	293
BmcAI	AGTACT	1 cut(s)	153
Bme18I	GGWCC	2 cut(s)	89, 286
BmgT120I	GGNCC	2 cut(s)	89, 286
BmiI	GGNNCC	1 cut(s)	91
BmsI	GCATC	3 cut(s)	28, 228, 622
BpiI	GAAGAC	1 cut(s)	573
Bpu10I	CCTNAGC	1 cut(s)	483
BsaI	GGTCTC	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	731
Bsc4I	CCNNNNNNNGG	3 cut(s)	183, 184, 743
Bse1I	ACTGG	1 cut(s)	671
BseDI	CCNNGG	1 cut(s)	731
BseGI	GGATG	2 cut(s)	384, 444
BseLI	CCNNNNNNNGG	3 cut(s)	183, 184, 743
BseMII	CTCAG	2 cut(s)	126, 474
BseNI	ACTGG	1 cut(s)	671
BseRI	GAGGAG	1 cut(s)	587
BseSI	GKGCMC	1 cut(s)	25
BseYI	CCCAGC	1 cut(s)	18
BsgI	GTGCAG	2 cut(s)	95, 309
BshFI	GGCC	1 cut(s)	736
BsiHKAI	GWGCWC	3 cut(s)	141, 452, 831
BslFI	GGGAC	1 cut(s)	75
BslI	CCNNNNNNNGG	3 cut(s)	183, 184, 743
BsmAI	GTCTC	3 cut(s)	111, 307, 365
BsmFI	GGGAC	1 cut(s)	75
BsnI	GGCC	1 cut(s)	736
Bso31I	GGTCTC	1 cut(s)	307
Bsp1286I	GDGCHC	4 cut(s)	25, 141, 452, 831
Bsp1407I	TGTACA	1 cut(s)	392
Bsp143I	GATC	4 cut(s)	78, 293, 351, 772
BspANI	GGCC	1 cut(s)	736
BspCNI	CTCAG	2 cut(s)	127, 475
BspLI	GGNNCC	1 cut(s)	91
BspMAI	CTGCAG	1 cut(s)	262
BspMI	ACCTGC	1 cut(s)	77
BspTNI	GGTCTC	1 cut(s)	307
BsrGI	TGTACA	1 cut(s)	392
BsrI	ACTGG	1 cut(s)	671
BssECI	CCNNGG	1 cut(s)	731
BssMI	GATC	4 cut(s)	78, 293, 351, 772
BssT1I	CCWWGG	1 cut(s)	731
Bst4CI	ACNGT	4 cut(s)	454, 781, 787, 816
Bst6I	CTCTTC	1 cut(s)	363
BstAUI	TGTACA	1 cut(s)	392
BstDEI	CTNAG	5 cut(s)	135, 179, 297, 483, 490
BstF5I	GGATG	2 cut(s)	384, 444
BstKTI	GATC	4 cut(s)	81, 296, 354, 775
BstMAI	GTCTC	3 cut(s)	111, 307, 365
BstMBI	GATC	4 cut(s)	78, 293, 351, 772
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 502, 733
BstNSI	RCATGY	1 cut(s)	29
BstSFI	CTRYAG	1 cut(s)	258
BstSLI	GKGCMC	1 cut(s)	25
BstV2I	GAAGAC	1 cut(s)	573
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
BsuRI	GGCC	1 cut(s)	736
BtsCI	GGATG	2 cut(s)	384, 444
BtsIMutI	CAGTG	1 cut(s)	12
BveI	ACCTGC	1 cut(s)	77
CaiI	CAGNNNCTG	2 cut(s)	125, 482
Cfr13I	GGNCC	2 cut(s)	89, 286
Csp6I	GTAC	2 cut(s)	152, 393
CviAII	CATG	3 cut(s)	26, 82, 251
CviQI	GTAC	2 cut(s)	152, 393
DdeI	CTNAG	5 cut(s)	135, 179, 297, 483, 490
DpnI	GATC	4 cut(s)	80, 295, 353, 774
DpnII	GATC	4 cut(s)	78, 293, 351, 772
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Ecl136II	GAGCTC	2 cut(s)	139, 829
Eco130I	CCWWGG	1 cut(s)	731
Eco24I	GRGCYC	2 cut(s)	141, 831
Eco31I	GGTCTC	1 cut(s)	307
Eco47I	GGWCC	2 cut(s)	89, 286
Eco53kI	GAGCTC	2 cut(s)	139, 829
Eco57I	CTGAAG	1 cut(s)	567
EcoICRI	GAGCTC	2 cut(s)	139, 829
EcoO109I	RGGNCCY	1 cut(s)	89
EcoT14I	CCWWGG	1 cut(s)	731
EcoT22I	ATGCAT	1 cut(s)	43
EcoT38I	GRGCYC	2 cut(s)	141, 831
ErhI	CCWWGG	1 cut(s)	731
FaeI	CATG	3 cut(s)	29, 85, 254
FaqI	GGGAC	1 cut(s)	75
FatI	CATG	3 cut(s)	25, 81, 250
FauNDI	CATATG	2 cut(s)	332, 598
FokI	GGATG	2 cut(s)	391, 451
FriOI	GRGCYC	2 cut(s)	141, 831
GsaI	CCCAGC	1 cut(s)	22
HaeIII	GGCC	1 cut(s)	736
Hin1II	CATG	3 cut(s)	29, 85, 254
HinfI	GANTC	3 cut(s)	122, 191, 385
HphI	GGTGA	5 cut(s)	212, 394, 716, 767, 782
Hpy188I	TCNGA	3 cut(s)	136, 286, 586
Hpy188III	TCNNGA	2 cut(s)	304, 355
HpyAV	CCTTC	3 cut(s)	67, 177, 814
HpyCH4III	ACNGT	4 cut(s)	454, 781, 787, 816
HpyCH4IV	ACGT	1 cut(s)	614
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 502, 733
HpyF3I	CTNAG	5 cut(s)	135, 179, 297, 483, 490
HpySE526I	ACGT	1 cut(s)	614
Hsp92II	CATG	3 cut(s)	29, 85, 254
Kzo9I	GATC	4 cut(s)	78, 293, 351, 772
LmnI	GCTCC	3 cut(s)	144, 447, 502
LweI	GCATC	3 cut(s)	28, 228, 622
MaeII	ACGT	1 cut(s)	614
MaeIII	GTNAC	2 cut(s)	382, 781
MalI	GATC	4 cut(s)	80, 295, 353, 774
MboI	GATC	4 cut(s)	78, 293, 351, 772
MboII	GAAGA	6 cut(s)	88, 247, 269, 380, 573, 641
MflI	RGATCY	1 cut(s)	293
MhlI	GDGCHC	4 cut(s)	25, 141, 452, 831
MlyI	GAGTC	2 cut(s)	116, 379
MnlI	CCTC	3 cut(s)	61, 478, 565
Mph1103I	ATGCAT	1 cut(s)	43
MseI	TTAA	2 cut(s)	270, 765
MslI	CAYNNNNRTG	1 cut(s)	331
MwoI	GCNNNNNNNGC	3 cut(s)	47, 502, 733
NdeI	CATATG	2 cut(s)	332, 598
NdeII	GATC	4 cut(s)	78, 293, 351, 772
NlaIII	CATG	3 cut(s)	29, 85, 254
NlaIV	GGNNCC	1 cut(s)	91
NmuCI	GTSAC	2 cut(s)	382, 781
NsiI	ATGCAT	1 cut(s)	43
NspI	RCATGY	1 cut(s)	29
PciI	ACATGT	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	191
PflMI	CCANNNNNTGG	1 cut(s)	743
PleI	GAGTC	2 cut(s)	116, 379
PpsI	GAGTC	2 cut(s)	116, 379
PpuMI	RGGWCCY	1 cut(s)	89
PscI	ACATGT	1 cut(s)	25
PshBI	ATTAAT	1 cut(s)	270
Psp124BI	GAGCTC	2 cut(s)	141, 831
Psp5II	RGGWCCY	1 cut(s)	89
PspFI	CCCAGC	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	91
PspPI	GGNCC	2 cut(s)	89, 286
PspPPI	RGGWCCY	1 cut(s)	89
PstI	CTGCAG	1 cut(s)	262
PstNI	CAGNNNCTG	2 cut(s)	125, 482
PsuI	RGATCY	1 cut(s)	293
RsaI	GTAC	2 cut(s)	153, 394
RsaNI	GTAC	2 cut(s)	152, 393
RseI	CAYNNNNRTG	1 cut(s)	331
SacI	GAGCTC	2 cut(s)	141, 831
SaqAI	TTAA	2 cut(s)	270, 765
Sau3AI	GATC	4 cut(s)	78, 293, 351, 772
Sau96I	GGNCC	2 cut(s)	89, 286
ScaI	AGTACT	1 cut(s)	153
SchI	GAGTC	2 cut(s)	116, 379
SduI	GDGCHC	4 cut(s)	25, 141, 452, 831
SfaNI	GCATC	3 cut(s)	28, 228, 622
SfcI	CTRYAG	1 cut(s)	258
SinI	GGWCC	2 cut(s)	89, 286
SmiMI	CAYNNNNRTG	1 cut(s)	331
SspI	AATATT	1 cut(s)	510
SstI	GAGCTC	2 cut(s)	141, 831
StyI	CCWWGG	1 cut(s)	731
TaaI	ACNGT	4 cut(s)	454, 781, 787, 816
TaiI	ACGT	1 cut(s)	617
TaqI	TCGA	2 cut(s)	305, 775
TatI	WGTACW	2 cut(s)	151, 392
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	2 cut(s)	270, 765
Tru9I	TTAA	2 cut(s)	270, 765
TscAI	CASTG	1 cut(s)	12
TseFI	GTSAC	2 cut(s)	382, 781
Tsp45I	GTSAC	2 cut(s)	382, 781
TspDTI	ATGAA	4 cut(s)	49, 239, 248, 580
TspRI	CASTG	1 cut(s)	12
Van91I	CCANNNNNTGG	1 cut(s)	743
VpaK11BI	GGWCC	2 cut(s)	89, 286
VspI	ATTAAT	1 cut(s)	270
XapI	RAATTY	4 cut(s)	172, 338, 416, 622
XceI	RCATGY	1 cut(s)	29
ZrmI	AGTACT	1 cut(s)	153
Zsp2I	ATGCAT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.