Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0000453

Physical Location & Seq

Genomic Coordinates Reverse (-)

25765007 .. 25766336

Gene Structure 1330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1199200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTTTCATGTTTTTGCTGAGAAGCTTGATCATTTGGTCTCCAACATTTCTTGTCCTCCAAGCAACCAATCAGCCAAAGTCTCCTCGGCTTTTGAAGTTCTCTCTGCTATTATATGGAAATCCTTGTCCAAGATTATGGATGGCTCAGAGCAGATAAAAAGGGTGACAATTTGTACGAAAAATGTGTATAAAAGGGAATTTGGAGTTCTGAGTAATGACATAGTGTGGAGCACGGTTGCAGCAGATTTCTTGGTTGCAGAAGCTGAAGTGTCAGATTTGCTTACATTCGTGAACTTGGAAGAGGCAGAGATTTATGGGCTTGAATTGAAGGGACAAAAACCAGTTTATACAAGTTATGGTATTAGTGGGGTTGGTGATGAAGGACTGGTTTTGGTGCTTCCGGCGAGTACTAATAATGTCGATCGATTAGTGAGTGTGGTCTTACCTGAAAATCAACTTGCACAGCTCAAAAGTGAGCTCCAAAGGAATTGGAGTATTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009555 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016053 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048229 GO:0048856 GO:0071704 GO:0072330 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

168

Amino Acids

18.36

Weight (kDa)

4.92

Isoelectric Point (pI)

30.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24510
fragaria_vesca	FvH4_5g34840 FvH4_5g34850
malus_domestica	MD08G1199200.v1.1 MD08G1199300.v1.1 MD15G1386300.v1.1 MD15G1386800.v1.1
prunus_persica	Prupe.1G533000_v2.0.a1
pyrus_communis	pycom08g17310 pycom15g34640 pycom15g34680
rosa_chinensis	RchiOBHm_Chr1g0364531 RchiOBHm_Chr4g0415781 RchiOBHm_Chr7g0232591 RchiOBHm_Chr7g0235521 RchiOBHm_Chr7g0235551 RchiOBHm_Chr7g0235561 RchiOBHm_Chr7g0235611 RchiOBHm_Chr7g0235721 RchiOBHm_Chr7g0235771
rosa_laevigata	RLG00000001141 RLG00000001147 RLG00000001148 RLG00000001151 RLG00000001152 RLG00000001321 RLG00000029743
rosa_multiflora	Rmu_co8320053.1_g000001 Rmu_co8402261.1_g000001 Rmu_co8447535.1_g000001 Rmu_sc0001912.1_g000001 Rmu_sc0001912.1_g000003 Rmu_sc0002617.1_g000016 Rmu_sc0002617.1_g000017 Rmu_sc0002892.1_g000022 Rmu_sc0002892.1_g000023 Rmu_sc0002892.1_g000041 Rmu_sc0002892.1_g000042 Rmu_sc0007994.1_g000006 Rmu_sc0010963.1_g000008 Rmu_sc0011151.1_g000005 Rmu_sc0012467.1_g000003 Rmu_ssc0000471.1_g000012 Rmu_ssc0000471.1_g000013
rosa_roxburghii	Rroxscaffold_3G00225680 Rroxscaffold_3G00225800 Rroxscaffold_3G00225870 Rroxscaffold_3G00228130 Rroxscaffold_6G00391050
rosa_rugosa	Rorug07G0275200 Rorug07G0291500.1 Rorug07G0292000 Rorug07G0292200 Rorug07G0292500 Rorug07G0295900
rosa_samantha	Rh7AG430000 Rh7AG446600 Rh7AG446800 Rh7AG447200 Rh7AG447300 Rh7AG447500 Rh7BG403500 Rh7BG418300 Rh7BG418400 Rh7BG418800 Rh7BG419000 Rh7BG419100 Rh7BG419300 Rh7BG419400 Rh7BG419500 Rh7BG419700 Rh7CG448700 Rh7CG466600 Rh7CG467000 Rh7CG467200 Rh7CG467300 Rh7CG467400 Rh7CG467500 Rh7CG468000 Rh7DG419700 Rh7DG435300 Rh7DG435400 Rh7DG435500 Rh7DG435600 Rh7DG436000 Rh7DG436500
rosa_wichuraiana	Rw0G011890 Rw7G035510 Rw7G037080 Rw7G037090 Rw7G037110 Rw7G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	197
AcuI	CTGAAG	1 cut(s)	285
AfaI	GTAC	2 cut(s)	175, 409
AgsI	TTSAA	3 cut(s)	95, 323, 328
AluBI	AGCT	4 cut(s)	25, 263, 466, 478
AluI	AGCT	4 cut(s)	25, 263, 466, 478
Alw21I	GWGCWC	2 cut(s)	233, 480
Alw26I	GTCTC	2 cut(s)	43, 85
AlwNI	CAGNNNCTG	1 cut(s)	263
ApeKI	GCWGC	1 cut(s)	239
ApoI	RAATTY	1 cut(s)	197
AsuHPI	GGTGA	2 cut(s)	175, 386
BanII	GRGCYC	1 cut(s)	480
Bbv12I	GWGCWC	2 cut(s)	233, 480
BbvI	GCAGC	1 cut(s)	251
BccI	CCATC	1 cut(s)	134
BclI	TGATCA	1 cut(s)	28
BcoDI	GTCTC	2 cut(s)	43, 85
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
BmcAI	AGTACT	1 cut(s)	409
Bsa29I	ATCGAT	1 cut(s)	424
BsaI	GGTCTC	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	84
Bse1I	ACTGG	2 cut(s)	341, 390
BseCI	ATCGAT	1 cut(s)	424
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	1 cut(s)	145
BseMII	CTCAG	3 cut(s)	9, 159, 200
BseNI	ACTGG	2 cut(s)	341, 390
BseRI	GAGGAG	1 cut(s)	73
BseXI	GCAGC	1 cut(s)	251
Bsh1285I	CGRYCG	1 cut(s)	424
BshVI	ATCGAT	1 cut(s)	424
BsiEI	CGRYCG	1 cut(s)	424
BsiHKAI	GWGCWC	2 cut(s)	233, 480
BsiSI	CCGG	1 cut(s)	401
BslFI	GGGAC	1 cut(s)	345
BsmAI	GTCTC	2 cut(s)	43, 85
BsmFI	GGGAC	1 cut(s)	345
Bso31I	GGTCTC	1 cut(s)	43
Bsp1286I	GDGCHC	2 cut(s)	233, 480
Bsp143I	GATC	2 cut(s)	28, 421
BspCNI	CTCAG	3 cut(s)	10, 158, 201
BspDI	ATCGAT	1 cut(s)	424
BspTNI	GGTCTC	1 cut(s)	43
BsrI	ACTGG	2 cut(s)	341, 390
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	2 cut(s)	28, 421
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	1 cut(s)	294
BstDEI	CTNAG	3 cut(s)	18, 145, 209
BstF5I	GGATG	1 cut(s)	145
BstKTI	GATC	2 cut(s)	31, 424
BstMAI	GTCTC	2 cut(s)	43, 85
BstMBI	GATC	2 cut(s)	28, 421
BstMCI	CGRYCG	1 cut(s)	424
BstV1I	GCAGC	1 cut(s)	251
BstXI	CCANNNNNNTGG	1 cut(s)	136
Bsu15I	ATCGAT	1 cut(s)	424
BsuTUI	ATCGAT	1 cut(s)	424
BtsCI	GGATG	1 cut(s)	145
CaiI	CAGNNNCTG	1 cut(s)	263
ClaI	ATCGAT	1 cut(s)	424
Csp6I	GTAC	2 cut(s)	174, 408
CviAII	CATG	1 cut(s)	8
CviJI	RGCY	8 cut(s)	25, 74, 89, 144, 263, 319, 466, 478
CviKI_1	RGCY	8 cut(s)	25, 74, 89, 144, 263, 319, 466, 478
CviQI	GTAC	2 cut(s)	174, 408
DdeI	CTNAG	3 cut(s)	18, 145, 209
DpnI	GATC	2 cut(s)	30, 423
DpnII	GATC	2 cut(s)	28, 421
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Ecl136II	GAGCTC	1 cut(s)	478
Eco24I	GRGCYC	1 cut(s)	480
Eco31I	GGTCTC	1 cut(s)	43
Eco53kI	GAGCTC	1 cut(s)	478
Eco57I	CTGAAG	1 cut(s)	285
EcoICRI	GAGCTC	1 cut(s)	478
EcoT38I	GRGCYC	1 cut(s)	480
FaeI	CATG	1 cut(s)	11
FaiI	YATR	9 cut(s)	9, 113, 115, 137, 189, 221, 315, 348, 357
FaqI	GGGAC	1 cut(s)	345
FatI	CATG	1 cut(s)	7
FbaI	TGATCA	1 cut(s)	28
Fnu4HI	GCNGC	1 cut(s)	240
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	480
Fsp4HI	GCNGC	1 cut(s)	240
GluI	GCNGC	1 cut(s)	240
HapII	CCGG	1 cut(s)	401
Hin1II	CATG	1 cut(s)	11
HindIII	AAGCTT	1 cut(s)	23
HpaII	CCGG	1 cut(s)	401
HphI	GGTGA	2 cut(s)	175, 386
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	3 cut(s)	148, 210, 274
Hpy188III	TCNNGA	1 cut(s)	289
Hpy8I	GTNNAC	1 cut(s)	292
HpyAV	CCTTC	2 cut(s)	322, 374
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4V	TGCA	3 cut(s)	239, 257, 461
HpyF3I	CTNAG	3 cut(s)	18, 145, 209
Hsp92II	CATG	1 cut(s)	11
Ksp22I	TGATCA	1 cut(s)	28
Kzo9I	GATC	2 cut(s)	28, 421
LmnI	GCTCC	2 cut(s)	228, 483
LpnPI	CCDG	4 cut(s)	354, 371, 414, 459
Lsp1109I	GCAGC	1 cut(s)	251
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	2 cut(s)	30, 423
MboI	GATC	2 cut(s)	28, 421
MboII	GAAGA	1 cut(s)	311
MhlI	GDGCHC	2 cut(s)	233, 480
MluCI	AATT	4 cut(s)	168, 197, 323, 487
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	3 cut(s)	66, 94, 295
MspI	CCGG	1 cut(s)	401
NdeII	GATC	2 cut(s)	28, 421
NlaIII	CATG	1 cut(s)	11
NmeAIII	GCCGAG	1 cut(s)	65
NmuCI	GTSAC	1 cut(s)	163
PkrI	GCNGC	1 cut(s)	241
Ple19I	CGATCG	1 cut(s)	424
Psp124BI	GAGCTC	1 cut(s)	480
PstNI	CAGNNNCTG	1 cut(s)	263
PvuI	CGATCG	1 cut(s)	424
RsaI	GTAC	2 cut(s)	175, 409
RsaNI	GTAC	2 cut(s)	174, 408
SacI	GAGCTC	1 cut(s)	480
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	2 cut(s)	28, 421
ScaI	AGTACT	1 cut(s)	409
SduI	GDGCHC	2 cut(s)	233, 480
SetI	ASST	5 cut(s)	27, 265, 448, 468, 480
Sse9I	AATT	4 cut(s)	168, 197, 323, 487
SstI	GAGCTC	1 cut(s)	480
TaaI	ACNGT	1 cut(s)	235
TaqI	TCGA	2 cut(s)	420, 424
TasI	AATT	4 cut(s)	168, 197, 323, 487
TatI	WGTACW	1 cut(s)	407
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	1 cut(s)	239
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	1 cut(s)	393
XapI	RAATTY	1 cut(s)	197
ZrmI	AGTACT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.