Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8447535.1

Orthogroup ID

OG0000453

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 281

Gene Structure 281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8447535.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 281 bp

ggagaatccgaagatctgaaacaggccggcctttcatcacgtgtaacgacggcggtgtgagaattgtggaggctcgttgtgacgaaacggtcgatgaatggttggccatggctgtggaggatgattctacttttgatggtcttgcttataatcgagcagttggtgaaactggtcttgatttctctcctttggtctttatacaggttaaatcactagctcactactcgtctatcatggaaatggattctacgttagctaatctttttcaagtttcaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009555 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016053 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048229 GO:0048856 GO:0071704 GO:0072330 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

92

Amino Acids

10.25

Weight (kDa)

4.43

Isoelectric Point (pI)

42.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24510
fragaria_vesca	FvH4_5g34840 FvH4_5g34850
malus_domestica	MD08G1199200.v1.1 MD08G1199300.v1.1 MD15G1386300.v1.1 MD15G1386800.v1.1
prunus_persica	Prupe.1G533000_v2.0.a1
pyrus_communis	pycom08g17310 pycom15g34640 pycom15g34680
rosa_chinensis	RchiOBHm_Chr1g0364531 RchiOBHm_Chr4g0415781 RchiOBHm_Chr7g0232591 RchiOBHm_Chr7g0235521 RchiOBHm_Chr7g0235551 RchiOBHm_Chr7g0235561 RchiOBHm_Chr7g0235611 RchiOBHm_Chr7g0235721 RchiOBHm_Chr7g0235771
rosa_laevigata	RLG00000001141 RLG00000001147 RLG00000001148 RLG00000001151 RLG00000001152 RLG00000001321 RLG00000029743
rosa_multiflora	Rmu_co8320053.1_g000001 Rmu_co8402261.1_g000001 Rmu_co8447535.1_g000001 Rmu_sc0001912.1_g000001 Rmu_sc0001912.1_g000003 Rmu_sc0002617.1_g000016 Rmu_sc0002617.1_g000017 Rmu_sc0002892.1_g000022 Rmu_sc0002892.1_g000023 Rmu_sc0002892.1_g000041 Rmu_sc0002892.1_g000042 Rmu_sc0007994.1_g000006 Rmu_sc0010963.1_g000008 Rmu_sc0011151.1_g000005 Rmu_sc0012467.1_g000003 Rmu_ssc0000471.1_g000012 Rmu_ssc0000471.1_g000013
rosa_roxburghii	Rroxscaffold_3G00225680 Rroxscaffold_3G00225800 Rroxscaffold_3G00225870 Rroxscaffold_3G00228130 Rroxscaffold_6G00391050
rosa_rugosa	Rorug07G0275200 Rorug07G0291500.1 Rorug07G0292000 Rorug07G0292200 Rorug07G0292500 Rorug07G0295900
rosa_samantha	Rh7AG430000 Rh7AG446600 Rh7AG446800 Rh7AG447200 Rh7AG447300 Rh7AG447500 Rh7BG403500 Rh7BG418300 Rh7BG418400 Rh7BG418800 Rh7BG419000 Rh7BG419100 Rh7BG419300 Rh7BG419400 Rh7BG419500 Rh7BG419700 Rh7CG448700 Rh7CG466600 Rh7CG467000 Rh7CG467200 Rh7CG467300 Rh7CG467400 Rh7CG467500 Rh7CG468000 Rh7DG419700 Rh7DG435300 Rh7DG435400 Rh7DG435500 Rh7DG435600 Rh7DG436000 Rh7DG436500
rosa_wichuraiana	Rw0G011890 Rw7G035510 Rw7G037080 Rw7G037090 Rw7G037110 Rw7G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	149
AasI	GACNNNNNNGTC	1 cut(s)	88
AciI	CCGC	1 cut(s)	53
AcoI	YGGCCR	1 cut(s)	104
AcvI	CACGTG	1 cut(s)	41
AflIII	ACRYGT	1 cut(s)	40
AgsI	TTSAA	2 cut(s)	268, 275
AluBI	AGCT	2 cut(s)	217, 256
AluI	AGCT	2 cut(s)	217, 256
AoxI	GGCC	3 cut(s)	24, 28, 104
AsuHPI	GGTGA	1 cut(s)	175
BalI	TGGCCA	1 cut(s)	106
BbrPI	CACGTG	1 cut(s)	41
BccI	CCATC	1 cut(s)	130
BceAI	ACGGC	1 cut(s)	66
BfaI	CTAG	1 cut(s)	214
BglII	AGATCT	1 cut(s)	13
BsaAI	YACGTR	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	107
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	107
BseGI	GGATG	1 cut(s)	126
BseNI	ACTGG	1 cut(s)	174
Bsh1285I	CGRYCG	1 cut(s)	92
BshFI	GGCC	3 cut(s)	26, 30, 106
BsiEI	CGRYCG	1 cut(s)	92
BsiSI	CCGG	1 cut(s)	27
BsnI	GGCC	3 cut(s)	26, 30, 106
Bsp143I	GATC	1 cut(s)	13
Bsp19I	CCATGG	1 cut(s)	107
BspACI	CCGC	1 cut(s)	53
BspANI	GGCC	3 cut(s)	26, 30, 106
BsrFI	RCCGGY	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	174
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	1 cut(s)	107
BssMI	GATC	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	107
Bst4CI	ACNGT	1 cut(s)	90
BstBAI	YACGTR	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	28
BstDSI	CCRYGG	1 cut(s)	107
BstF5I	GGATG	1 cut(s)	126
BstKTI	GATC	1 cut(s)	16
BstMBI	GATC	1 cut(s)	13
BstMCI	CGRYCG	1 cut(s)	92
BstX2I	RGATCY	1 cut(s)	13
BstXI	CCANNNNNNTGG	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	13
BsuRI	GGCC	3 cut(s)	26, 30, 106
BtgI	CCRYGG	1 cut(s)	107
BtsCI	GGATG	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	28
Cfr10I	RCCGGY	1 cut(s)	26
CviAII	CATG	2 cut(s)	108, 234
CviJI	RGCY	7 cut(s)	26, 30, 73, 106, 112, 217, 256
CviKI_1	RGCY	7 cut(s)	26, 30, 73, 106, 112, 217, 256
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
DrdI	GACNNNNNNGTC	1 cut(s)	88
DseDI	GACNNNNNNGTC	1 cut(s)	88
EaeI	YGGCCR	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	107
Eco72I	CACGTG	1 cut(s)	41
EcoT14I	CCWWGG	1 cut(s)	107
ErhI	CCWWGG	1 cut(s)	107
FaeI	CATG	2 cut(s)	111, 237
FaiI	YATR	4 cut(s)	109, 149, 199, 235
FatI	CATG	2 cut(s)	107, 233
FokI	GGATG	1 cut(s)	133
FseI	GGCCGGCC	1 cut(s)	30
FspBI	CTAG	1 cut(s)	214
HaeIII	GGCC	3 cut(s)	26, 30, 106
HapII	CCGG	1 cut(s)	27
Hin1II	CATG	2 cut(s)	111, 237
HinfI	GANTC	3 cut(s)	5, 124, 244
HpaII	CCGG	1 cut(s)	27
HphI	GGTGA	1 cut(s)	175
Hpy188I	TCNGA	2 cut(s)	10, 18
Hpy188III	TCNNGA	1 cut(s)	175
Hpy99I	CGWCG	1 cut(s)	52
HpyCH4III	ACNGT	1 cut(s)	90
HpyCH4IV	ACGT	2 cut(s)	40, 250
HpySE526I	ACGT	2 cut(s)	40, 250
Hsp92II	CATG	2 cut(s)	111, 237
KroI	GCCGGC	1 cut(s)	26
KroNI	GCCGGC	1 cut(s)	28
Kzo9I	GATC	1 cut(s)	13
LpnPI	CCDG	4 cut(s)	8, 40, 155, 187
MaeI	CTAG	1 cut(s)	214
MaeII	ACGT	2 cut(s)	40, 250
MaeIII	GTNAC	2 cut(s)	43, 79
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	1 cut(s)	23
MflI	RGATCY	1 cut(s)	13
MlsI	TGGCCA	1 cut(s)	106
MluCI	AATT	2 cut(s)	62, 276
MluNI	TGGCCA	1 cut(s)	106
MnlI	CCTC	2 cut(s)	63, 111
Mox20I	TGGCCA	1 cut(s)	106
MroNI	GCCGGC	1 cut(s)	26
MscI	TGGCCA	1 cut(s)	106
MseI	TTAA	2 cut(s)	206, 279
MslI	CAYNNNNRTG	2 cut(s)	112, 238
Msp20I	TGGCCA	1 cut(s)	106
MspI	CCGG	1 cut(s)	27
NaeI	GCCGGC	1 cut(s)	28
NcoI	CCATGG	1 cut(s)	107
NdeII	GATC	1 cut(s)	13
NgoMIV	GCCGGC	1 cut(s)	26
NlaIII	CATG	2 cut(s)	111, 237
NmuCI	GTSAC	1 cut(s)	79
PcsI	WCGNNNNNNNCGW	1 cut(s)	89
PdiI	GCCGGC	1 cut(s)	28
PfeI	GAWTC	3 cut(s)	5, 124, 244
PmaCI	CACGTG	1 cut(s)	41
PmlI	CACGTG	1 cut(s)	41
Ppu21I	YACGTR	1 cut(s)	41
PsiI	TTATAA	1 cut(s)	149
PspCI	CACGTG	1 cut(s)	41
PsuI	RGATCY	1 cut(s)	13
RigI	GGCCGGCC	1 cut(s)	30
RseI	CAYNNNNRTG	2 cut(s)	112, 238
SaqAI	TTAA	2 cut(s)	206, 279
Sau3AI	GATC	1 cut(s)	13
SetI	ASST	5 cut(s)	43, 206, 219, 253, 258
SmiMI	CAYNNNNRTG	2 cut(s)	112, 238
Sse9I	AATT	2 cut(s)	62, 276
SsiI	CCGC	1 cut(s)	53
SspMI	CTAG	1 cut(s)	214
StyI	CCWWGG	1 cut(s)	107
TaaI	ACNGT	1 cut(s)	90
TaiI	ACGT	2 cut(s)	43, 253
TaqI	TCGA	2 cut(s)	92, 153
TasI	AATT	2 cut(s)	62, 276
TfiI	GAWTC	3 cut(s)	5, 124, 244
Tru1I	TTAA	2 cut(s)	206, 279
Tru9I	TTAA	2 cut(s)	206, 279
TseFI	GTSAC	1 cut(s)	79
Tsp45I	GTSAC	1 cut(s)	79
TspDTI	ATGAA	2 cut(s)	24, 110
XspI	CTAG	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.