Rmu_sc0002892.1_g000022

Transferase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002892.1
Physical Location & Seq
Reverse (-)
97435 .. 98292
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002892.1_g000022.1.cds

Sequence Viewer

Length: 858 bp
atgtcagtgggaattagctgggcaaatgtccttggagatgcattttcagcctcaaccttcgtcaacctgtgggggaagaccatggcaggttacgtgcctcacaagtcactacacgtaccagactggcctgcaaaacctaagctcccacttttagttcttcccaaggtaacacgaaatgcccttaaaagggttgattcagttggcgacttatggctcacacccaacaactgcaagatgaagacacatactttccatgttcctggagcgaaaattaaccatcttctctcagaccaaaaattcaaggtctcagcttttgaagtattctcagcaatcatatggaaaaccttgtccaagatcaaggaaaacccagaggagacaaggatggtgactctttgtacaaacatactccgtgaaaaagaatttgagtctccaagtaatgggatggtgtggagcacagtagaagcagatttctgggtggcaaaagctgaggtgtcagaattggtagagctcattttgaacaaaagggaagatgagaatggcatgattgaagagatgatggggaatacagagactggggaaaaatctttagacttcatagcatatggggcaaaattgacatttgtgaatttagaagagatagagatttatggccttgaattgaattggcaaaagccagtttatgcaaattattccattaatggggttggtgatgagggagttgtcttggtgcttccagggccaaaatgtggtaaggagggagatggcataaatggtgatcgatctgtgactatggttctccctgaaaatcaacttgcacagctgaaagttgagctcaaacggaattggagtattgcttga

Protein Analysis

285

Amino Acids

31.84

Weight (kDa)

5.67

Isoelectric Point (pI)

32.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24510
fragaria_vesca FvH4_5g34840 FvH4_5g34850
malus_domestica MD08G1199200.v1.1 MD08G1199300.v1.1 MD15G1386300.v1.1 MD15G1386800.v1.1
prunus_persica Prupe.1G533000_v2.0.a1
pyrus_communis pycom08g17310 pycom15g34640 pycom15g34680
rosa_chinensis RchiOBHm_Chr1g0364531 RchiOBHm_Chr4g0415781 RchiOBHm_Chr7g0232591 RchiOBHm_Chr7g0235521 RchiOBHm_Chr7g0235551 RchiOBHm_Chr7g0235561 RchiOBHm_Chr7g0235611 RchiOBHm_Chr7g0235721 RchiOBHm_Chr7g0235771
rosa_laevigata RLG00000001141 RLG00000001147 RLG00000001148 RLG00000001151 RLG00000001152 RLG00000001321 RLG00000029743
rosa_multiflora Rmu_co8320053.1_g000001 Rmu_co8402261.1_g000001 Rmu_co8447535.1_g000001 Rmu_sc0001912.1_g000001 Rmu_sc0001912.1_g000003 Rmu_sc0002617.1_g000016 Rmu_sc0002617.1_g000017 Rmu_sc0002892.1_g000022 Rmu_sc0002892.1_g000023 Rmu_sc0002892.1_g000041 Rmu_sc0002892.1_g000042 Rmu_sc0007994.1_g000006 Rmu_sc0010963.1_g000008 Rmu_sc0011151.1_g000005 Rmu_sc0012467.1_g000003 Rmu_ssc0000471.1_g000012 Rmu_ssc0000471.1_g000013
rosa_roxburghii Rroxscaffold_3G00225680 Rroxscaffold_3G00225800 Rroxscaffold_3G00225870 Rroxscaffold_3G00228130 Rroxscaffold_6G00391050
rosa_rugosa Rorug07G0275200 Rorug07G0291500.1 Rorug07G0292000 Rorug07G0292200 Rorug07G0292500 Rorug07G0295900
rosa_samantha Rh7AG430000 Rh7AG446600 Rh7AG446800 Rh7AG447200 Rh7AG447300 Rh7AG447500 Rh7BG403500 Rh7BG418300 Rh7BG418400 Rh7BG418800 Rh7BG419000 Rh7BG419100 Rh7BG419300 Rh7BG419400 Rh7BG419500 Rh7BG419700 Rh7CG448700 Rh7CG466600 Rh7CG467000 Rh7CG467200 Rh7CG467300 Rh7CG467400 Rh7CG467500 Rh7CG468000 Rh7DG419700 Rh7DG435300 Rh7DG435400 Rh7DG435500 Rh7DG435600 Rh7DG436000 Rh7DG436500
rosa_wichuraiana Rw0G011890 Rw7G035510 Rw7G037080 Rw7G037090 Rw7G037110 Rw7G037180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 77
AccB7I CCANNNNNTGG 2 cut(s) 437, 746
AcsI RAATTY 3 cut(s) 296, 419, 625
AfaI GTAC 2 cut(s) 117, 397
AfiI CCNNNNNNNGG 5 cut(s) 186, 187, 437, 699, 746
AflIII ACRYGT 1 cut(s) 112
AgsI TTSAA 6 cut(s) 301, 317, 517, 548, 656, 661
AjnI CCWGG 2 cut(s) 259, 733
AluBI AGCT 7 cut(s) 18, 142, 311, 485, 508, 820, 832
AluI AGCT 7 cut(s) 18, 142, 311, 485, 508, 820, 832
Alw21I GWGCWC 3 cut(s) 455, 510, 834
Alw26I GTCTC 4 cut(s) 310, 368, 432, 563
AlwNI CAGNNNCTG 1 cut(s) 572
AoxI GGCC 3 cut(s) 125, 649, 737
ApoI RAATTY 3 cut(s) 296, 419, 625
AseI ATTAAT 1 cut(s) 696
AspS9I GGNCC 1 cut(s) 737
AsuHPI GGTGA 3 cut(s) 397, 719, 785
BanII GRGCYC 2 cut(s) 510, 834
BbsI GAAGAC 2 cut(s) 83, 245
Bbv12I GWGCWC 3 cut(s) 455, 510, 834
BbvCI CCTCAGC 1 cut(s) 486
BccI CCATC 5 cut(s) 285, 376, 436, 550, 755
BciT130I CCWGG 2 cut(s) 261, 735
BcoDI GTCTC 4 cut(s) 310, 368, 432, 563
BfuAI ACCTGC 1 cut(s) 77
Bme1390I CCNGG 2 cut(s) 261, 735
BmgT120I GGNCC 1 cut(s) 737
BmrFI CCNGG 2 cut(s) 261, 735
BmrI ACTGGG 1 cut(s) 582
BmsI GCATC 1 cut(s) 28
BmuI ACTGGG 1 cut(s) 582
BpiI GAAGAC 2 cut(s) 83, 245
BpmI CTGGAG 1 cut(s) 282
Bpu10I CCTNAGC 2 cut(s) 138, 486
Bsa29I ATCGAT 1 cut(s) 778
BsaAI YACGTR 2 cut(s) 94, 115
BsaI GGTCTC 1 cut(s) 310
BsaJI CCNNGG 4 cut(s) 31, 81, 162, 734
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bsc4I CCNNNNNNNGG 5 cut(s) 186, 187, 437, 699, 746
Bse1I ACTGG 3 cut(s) 128, 577, 674
BseBI CCWGG 2 cut(s) 261, 735
BseCI ATCGAT 1 cut(s) 778
BseDI CCNNGG 4 cut(s) 31, 81, 162, 734
BseGI GGATG 2 cut(s) 387, 447
BseLI CCNNNNNNNGG 5 cut(s) 186, 187, 437, 699, 746
BseMII CTCAG 4 cut(s) 300, 321, 339, 477
BseNI ACTGG 3 cut(s) 128, 577, 674
BseRI GAGGAG 1 cut(s) 386
BseYI CCCAGC 1 cut(s) 18
BshFI GGCC 3 cut(s) 127, 651, 739
BshVI ATCGAT 1 cut(s) 778
BsiHKAI GWGCWC 3 cut(s) 455, 510, 834
BslI CCNNNNNNNGG 5 cut(s) 186, 187, 437, 699, 746
BsmAI GTCTC 4 cut(s) 310, 368, 432, 563
BsnI GGCC 3 cut(s) 127, 651, 739
Bso31I GGTCTC 1 cut(s) 310
Bsp1286I GDGCHC 3 cut(s) 455, 510, 834
Bsp1407I TGTACA 1 cut(s) 395
Bsp143I GATC 3 cut(s) 354, 775, 779
Bsp19I CCATGG 1 cut(s) 81
BspANI GGCC 3 cut(s) 127, 651, 739
BspCNI CTCAG 4 cut(s) 299, 320, 338, 478
BspDI ATCGAT 1 cut(s) 778
BspMI ACCTGC 1 cut(s) 77
BspTNI GGTCTC 1 cut(s) 310
BsrGI TGTACA 1 cut(s) 395
BsrI ACTGG 3 cut(s) 128, 577, 674
BssECI CCNNGG 4 cut(s) 31, 81, 162, 734
BssMI GATC 3 cut(s) 354, 775, 779
BssT1I CCWWGG 3 cut(s) 31, 81, 162
Bst2UI CCWGG 2 cut(s) 261, 735
Bst4CI ACNGT 1 cut(s) 457
Bst6I CTCTTC 2 cut(s) 543, 627
BstAUI TGTACA 1 cut(s) 395
BstBAI YACGTR 2 cut(s) 94, 115
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 5 cut(s) 138, 286, 307, 325, 486
BstDSI CCRYGG 1 cut(s) 81
BstF5I GGATG 2 cut(s) 387, 447
BstKTI GATC 3 cut(s) 357, 778, 782
BstMAI GTCTC 4 cut(s) 310, 368, 432, 563
BstMBI GATC 3 cut(s) 354, 775, 779
BstMWI GCNNNNNNNGC 3 cut(s) 47, 605, 736
BstNI CCWGG 2 cut(s) 261, 735
BstSCI CCNGG 2 cut(s) 259, 733
BstV2I GAAGAC 2 cut(s) 83, 245
BstXI CCANNNNNNTGG 1 cut(s) 260
Bsu15I ATCGAT 1 cut(s) 778
BsuRI GGCC 3 cut(s) 127, 651, 739
BsuTUI ATCGAT 1 cut(s) 778
BtgI CCRYGG 1 cut(s) 81
BtsCI GGATG 2 cut(s) 387, 447
BtsIMutI CAGTG 1 cut(s) 12
BveI ACCTGC 1 cut(s) 77
Cac8I GCNNGC 1 cut(s) 129
CaiI CAGNNNCTG 1 cut(s) 572
Cfr13I GGNCC 1 cut(s) 737
ClaI ATCGAT 1 cut(s) 778
Csp6I GTAC 2 cut(s) 116, 396
CviAII CATG 3 cut(s) 82, 254, 541
CviQI GTAC 2 cut(s) 116, 396
DdeI CTNAG 5 cut(s) 138, 286, 307, 325, 486
DpnI GATC 3 cut(s) 356, 777, 781
DpnII GATC 3 cut(s) 354, 775, 779
Eam1104I CTCTTC 2 cut(s) 543, 627
EarI CTCTTC 2 cut(s) 543, 627
Ecl136II GAGCTC 2 cut(s) 508, 832
Eco130I CCWWGG 3 cut(s) 31, 81, 162
Eco24I GRGCYC 2 cut(s) 510, 834
Eco31I GGTCTC 1 cut(s) 310
Eco53kI GAGCTC 2 cut(s) 508, 832
EcoICRI GAGCTC 2 cut(s) 508, 832
EcoRII CCWGG 2 cut(s) 259, 733
EcoT14I CCWWGG 3 cut(s) 31, 81, 162
EcoT22I ATGCAT 1 cut(s) 43
EcoT38I GRGCYC 2 cut(s) 510, 834
ErhI CCWWGG 3 cut(s) 31, 81, 162
FaeI CATG 3 cut(s) 85, 257, 544
FatI CATG 3 cut(s) 81, 253, 540
FauNDI CATATG 2 cut(s) 335, 601
FokI GGATG 2 cut(s) 394, 454
FriOI GRGCYC 2 cut(s) 510, 834
GsaI CCCAGC 1 cut(s) 22
GsuI CTGGAG 1 cut(s) 282
HaeIII GGCC 3 cut(s) 127, 651, 739
Hin1II CATG 3 cut(s) 85, 257, 544
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 3 cut(s) 194, 388, 425
HphI GGTGA 3 cut(s) 397, 719, 785
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 2 cut(s) 289, 496
Hpy8I GTNNAC 1 cut(s) 64
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 457
HpyCH4IV ACGT 2 cut(s) 93, 114
HpyCH4V TGCA 5 cut(s) 41, 131, 231, 683, 815
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 605, 736
HpyF3I CTNAG 5 cut(s) 138, 286, 307, 325, 486
HpySE526I ACGT 2 cut(s) 93, 114
Hsp92II CATG 3 cut(s) 85, 257, 544
Kzo9I GATC 3 cut(s) 354, 775, 779
LmnI GCTCC 3 cut(s) 147, 263, 450
LweI GCATC 1 cut(s) 28
MaeII ACGT 2 cut(s) 93, 114
MaeIII GTNAC 5 cut(s) 89, 105, 166, 385, 784
MalI GATC 3 cut(s) 356, 777, 781
MboI GATC 3 cut(s) 354, 775, 779
MboII GAAGA 7 cut(s) 88, 149, 250, 272, 539, 560, 644
MhlI GDGCHC 3 cut(s) 455, 510, 834
MlyI GAGTC 2 cut(s) 382, 434
MnlI CCTC 6 cut(s) 61, 108, 364, 481, 706, 748
Mph1103I ATGCAT 1 cut(s) 43
MseI TTAA 3 cut(s) 183, 273, 696
MspA1I CMGCKG 1 cut(s) 820
MspR9I CCNGG 2 cut(s) 261, 735
MvaI CCWGG 2 cut(s) 261, 735
MwoI GCNNNNNNNGC 3 cut(s) 47, 605, 736
NcoI CCATGG 1 cut(s) 81
NdeI CATATG 2 cut(s) 335, 601
NdeII GATC 3 cut(s) 354, 775, 779
NlaIII CATG 3 cut(s) 85, 257, 544
NmuCI GTSAC 3 cut(s) 105, 385, 784
NsiI ATGCAT 1 cut(s) 43
PfeI GAWTC 1 cut(s) 194
PflMI CCANNNNNTGG 2 cut(s) 437, 746
PfoI TCCNGGA 1 cut(s) 259
PleI GAGTC 2 cut(s) 382, 433
PpsI GAGTC 2 cut(s) 382, 433
Ppu21I YACGTR 2 cut(s) 94, 115
PshBI ATTAAT 1 cut(s) 696
Psp124BI GAGCTC 2 cut(s) 510, 834
Psp6I CCWGG 2 cut(s) 259, 733
PspFI CCCAGC 1 cut(s) 18
PspGI CCWGG 2 cut(s) 259, 733
PspPI GGNCC 1 cut(s) 737
PstNI CAGNNNCTG 1 cut(s) 572
PvuII CAGCTG 1 cut(s) 820
RsaI GTAC 2 cut(s) 117, 397
RsaNI GTAC 2 cut(s) 116, 396
SacI GAGCTC 2 cut(s) 510, 834
SaqAI TTAA 3 cut(s) 183, 273, 696
Sau3AI GATC 3 cut(s) 354, 775, 779
Sau96I GGNCC 1 cut(s) 737
SchI GAGTC 2 cut(s) 382, 434
ScrFI CCNGG 2 cut(s) 261, 735
SduI GDGCHC 3 cut(s) 455, 510, 834
SfaNI GCATC 1 cut(s) 28
SstI GAGCTC 2 cut(s) 510, 834
StyD4I CCNGG 2 cut(s) 259, 733
StyI CCWWGG 3 cut(s) 31, 81, 162
TaaI ACNGT 1 cut(s) 457
TaiI ACGT 2 cut(s) 96, 117
TaqI TCGA 1 cut(s) 778
TatI WGTACW 1 cut(s) 395
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 3 cut(s) 183, 273, 696
Tru9I TTAA 3 cut(s) 183, 273, 696
TscAI CASTG 1 cut(s) 12
TseFI GTSAC 3 cut(s) 105, 385, 784
Tsp45I GTSAC 3 cut(s) 105, 385, 784
TspDTI ATGAA 2 cut(s) 251, 583
TspGWI ACGGA 2 cut(s) 398, 853
TspRI CASTG 1 cut(s) 12
Van91I CCANNNNNTGG 2 cut(s) 437, 746
VspI ATTAAT 1 cut(s) 696
XapI RAATTY 3 cut(s) 296, 419, 625
Zsp2I ATGCAT 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.