Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000453

Physical Location & Seq

Genomic Coordinates Reverse (-)

60269796 .. 60270472

Gene Structure 677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21109

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGTGTCCTATAGCTATAATTCTAGTAGTGCACCCAACAACTGCAAGATGAAGACACATACTTTCCATGTTCCTAGAGCGAAAATTAACCATTTTCTCTCAGACCAAAAATTCAAGGTCTCAGCTTTTGAAGTATTCTCAGCAATCATATGGAAAACCTTGTCCAAGATCAAGGAAAACCCAGAGGAGACAAGGATGGTGACTCTTTGTACAAACATACTCCGTGAAAAAGAATTTGAGTCTCCAAGTAATGGGATGGTGTGGAGCACAGTAGAAGCAGATTTCTGGGTGGCAGAAGCTGAGGTCTCAGAATTGGTAGAGCTCATTTTGAACAAAAGGGAAGATGAGAATGGCATGATTGAAGAGATGATGGGGAATACTGAGACTGGGGAAAAATCTTCAGACTTCATAGCATATGGGGCAAAATTGACATTTGTGAATTTAGAAGAGATAGAGATTTATGGCCTTGAATTGAAGGGGCAAAAGCCAGTTTATGCAAATTATTCCATTAATGGGGTTGGTGATGAGGGAGTTGTCTTGGTGCTTCCAGGGCCAAAATGTGGTAAGGAGGGAGATGGCATAAATGGTGATCGATATGTGACTATGGTTCTCCCTGAAAATCAACTTGCACAGCTGAAAGTTGAGCTCAAAAGGAATTGGAGTATTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009555 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016053 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048229 GO:0048856 GO:0071704 GO:0072330 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

223

Amino Acids

25.1

Weight (kDa)

5.01

Isoelectric Point (pI)

31.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24510
fragaria_vesca	FvH4_5g34840 FvH4_5g34850
malus_domestica	MD08G1199200.v1.1 MD08G1199300.v1.1 MD15G1386300.v1.1 MD15G1386800.v1.1
prunus_persica	Prupe.1G533000_v2.0.a1
pyrus_communis	pycom08g17310 pycom15g34640 pycom15g34680
rosa_chinensis	RchiOBHm_Chr1g0364531 RchiOBHm_Chr4g0415781 RchiOBHm_Chr7g0232591 RchiOBHm_Chr7g0235521 RchiOBHm_Chr7g0235551 RchiOBHm_Chr7g0235561 RchiOBHm_Chr7g0235611 RchiOBHm_Chr7g0235721 RchiOBHm_Chr7g0235771
rosa_laevigata	RLG00000001141 RLG00000001147 RLG00000001148 RLG00000001151 RLG00000001152 RLG00000001321 RLG00000029743
rosa_multiflora	Rmu_co8320053.1_g000001 Rmu_co8402261.1_g000001 Rmu_co8447535.1_g000001 Rmu_sc0001912.1_g000001 Rmu_sc0001912.1_g000003 Rmu_sc0002617.1_g000016 Rmu_sc0002617.1_g000017 Rmu_sc0002892.1_g000022 Rmu_sc0002892.1_g000023 Rmu_sc0002892.1_g000041 Rmu_sc0002892.1_g000042 Rmu_sc0007994.1_g000006 Rmu_sc0010963.1_g000008 Rmu_sc0011151.1_g000005 Rmu_sc0012467.1_g000003 Rmu_ssc0000471.1_g000012 Rmu_ssc0000471.1_g000013
rosa_roxburghii	Rroxscaffold_3G00225680 Rroxscaffold_3G00225800 Rroxscaffold_3G00225870 Rroxscaffold_3G00228130 Rroxscaffold_6G00391050
rosa_rugosa	Rorug07G0275200 Rorug07G0291500.1 Rorug07G0292000 Rorug07G0292200 Rorug07G0292500 Rorug07G0295900
rosa_samantha	Rh7AG430000 Rh7AG446600 Rh7AG446800 Rh7AG447200 Rh7AG447300 Rh7AG447500 Rh7BG403500 Rh7BG418300 Rh7BG418400 Rh7BG418800 Rh7BG419000 Rh7BG419100 Rh7BG419300 Rh7BG419400 Rh7BG419500 Rh7BG419700 Rh7CG448700 Rh7CG466600 Rh7CG467000 Rh7CG467200 Rh7CG467300 Rh7CG467400 Rh7CG467500 Rh7CG468000 Rh7DG419700 Rh7DG435300 Rh7DG435400 Rh7DG435500 Rh7DG435600 Rh7DG436000 Rh7DG436500
rosa_wichuraiana	Rw0G011890 Rw7G035510 Rw7G037080 Rw7G037090 Rw7G037110 Rw7G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	251, 560
AcsI	RAATTY	3 cut(s)	110, 233, 439
AcuI	CTGAAG	1 cut(s)	384
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	3 cut(s)	251, 513, 560
AgsI	TTSAA	6 cut(s)	115, 131, 331, 362, 470, 475
AjnI	CCWGG	1 cut(s)	547
AluBI	AGCT	6 cut(s)	15, 125, 299, 322, 634, 646
AluI	AGCT	6 cut(s)	15, 125, 299, 322, 634, 646
Alw21I	GWGCWC	4 cut(s)	34, 269, 324, 648
Alw26I	GTCTC	5 cut(s)	124, 182, 246, 310, 377
Alw44I	GTGCAC	1 cut(s)	30
AlwNI	CAGNNNCTG	1 cut(s)	299
AoxI	GGCC	2 cut(s)	463, 551
ApaLI	GTGCAC	1 cut(s)	30
ApoI	RAATTY	3 cut(s)	110, 233, 439
AseI	ATTAAT	1 cut(s)	510
AspS9I	GGNCC	1 cut(s)	551
AsuHPI	GGTGA	3 cut(s)	211, 533, 599
BaeGI	GKGCMC	1 cut(s)	34
BanII	GRGCYC	2 cut(s)	324, 648
BbsI	GAAGAC	1 cut(s)	59
Bbv12I	GWGCWC	4 cut(s)	34, 269, 324, 648
BbvCI	CCTCAGC	1 cut(s)	300
BccI	CCATC	4 cut(s)	190, 250, 364, 569
BciT130I	CCWGG	1 cut(s)	549
BcoDI	GTCTC	5 cut(s)	124, 182, 246, 310, 377
BfaI	CTAG	2 cut(s)	24, 75
BfmI	CTRYAG	1 cut(s)	10
Bme1390I	CCNGG	1 cut(s)	549
BmgT120I	GGNCC	1 cut(s)	551
BmrFI	CCNGG	1 cut(s)	549
BmrI	ACTGGG	1 cut(s)	396
BmuI	ACTGGG	1 cut(s)	396
BpiI	GAAGAC	1 cut(s)	59
Bpu10I	CCTNAGC	1 cut(s)	300
Bsa29I	ATCGAT	1 cut(s)	592
BsaI	GGTCTC	2 cut(s)	124, 310
BsaJI	CCNNGG	1 cut(s)	548
Bsc4I	CCNNNNNNNGG	3 cut(s)	251, 513, 560
Bse1I	ACTGG	2 cut(s)	391, 488
BseBI	CCWGG	1 cut(s)	549
BseCI	ATCGAT	1 cut(s)	592
BseDI	CCNNGG	1 cut(s)	548
BseGI	GGATG	2 cut(s)	201, 261
BseLI	CCNNNNNNNGG	3 cut(s)	251, 513, 560
BseMII	CTCAG	6 cut(s)	114, 135, 153, 291, 321, 372
BseNI	ACTGG	2 cut(s)	391, 488
BseRI	GAGGAG	1 cut(s)	200
BseSI	GKGCMC	1 cut(s)	34
BshFI	GGCC	2 cut(s)	465, 553
BshVI	ATCGAT	1 cut(s)	592
BsiHKAI	GWGCWC	4 cut(s)	34, 269, 324, 648
BslI	CCNNNNNNNGG	3 cut(s)	251, 513, 560
BsmAI	GTCTC	5 cut(s)	124, 182, 246, 310, 377
BsnI	GGCC	2 cut(s)	465, 553
Bso31I	GGTCTC	2 cut(s)	124, 310
Bsp1286I	GDGCHC	4 cut(s)	34, 269, 324, 648
Bsp1407I	TGTACA	1 cut(s)	209
Bsp143I	GATC	2 cut(s)	168, 589
BspANI	GGCC	2 cut(s)	465, 553
BspCNI	CTCAG	6 cut(s)	113, 134, 152, 292, 320, 373
BspDI	ATCGAT	1 cut(s)	592
BspTNI	GGTCTC	2 cut(s)	124, 310
BsrGI	TGTACA	1 cut(s)	209
BsrI	ACTGG	2 cut(s)	391, 488
BssECI	CCNNGG	1 cut(s)	548
BssMI	GATC	2 cut(s)	168, 589
Bst2UI	CCWGG	1 cut(s)	549
Bst4CI	ACNGT	1 cut(s)	271
Bst6I	CTCTTC	2 cut(s)	357, 441
BstAUI	TGTACA	1 cut(s)	209
BstDEI	CTNAG	6 cut(s)	100, 121, 139, 300, 307, 381
BstF5I	GGATG	2 cut(s)	201, 261
BstKTI	GATC	2 cut(s)	171, 592
BstMAI	GTCTC	5 cut(s)	124, 182, 246, 310, 377
BstMBI	GATC	2 cut(s)	168, 589
BstMWI	GCNNNNNNNGC	2 cut(s)	419, 550
BstNI	CCWGG	1 cut(s)	549
BstSCI	CCNGG	1 cut(s)	547
BstSFI	CTRYAG	1 cut(s)	10
BstSLI	GKGCMC	1 cut(s)	34
BstV2I	GAAGAC	1 cut(s)	59
Bsu15I	ATCGAT	1 cut(s)	592
BsuRI	GGCC	2 cut(s)	465, 553
BsuTUI	ATCGAT	1 cut(s)	592
BtsCI	GGATG	2 cut(s)	201, 261
CaiI	CAGNNNCTG	1 cut(s)	299
Cfr13I	GGNCC	1 cut(s)	551
ClaI	ATCGAT	1 cut(s)	592
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	2 cut(s)	68, 355
CviJI	RGCY	9 cut(s)	15, 125, 299, 322, 465, 487, 553, 634, 646
CviKI_1	RGCY	9 cut(s)	15, 125, 299, 322, 465, 487, 553, 634, 646
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	6 cut(s)	100, 121, 139, 300, 307, 381
DpnI	GATC	2 cut(s)	170, 591
DpnII	GATC	2 cut(s)	168, 589
Eam1104I	CTCTTC	2 cut(s)	357, 441
EarI	CTCTTC	2 cut(s)	357, 441
Ecl136II	GAGCTC	2 cut(s)	322, 646
Eco24I	GRGCYC	2 cut(s)	324, 648
Eco31I	GGTCTC	2 cut(s)	124, 310
Eco53kI	GAGCTC	2 cut(s)	322, 646
Eco57I	CTGAAG	1 cut(s)	384
EcoICRI	GAGCTC	2 cut(s)	322, 646
EcoRII	CCWGG	1 cut(s)	547
EcoT38I	GRGCYC	2 cut(s)	324, 648
FaeI	CATG	2 cut(s)	71, 358
FatI	CATG	2 cut(s)	67, 354
FauNDI	CATATG	2 cut(s)	149, 415
FokI	GGATG	2 cut(s)	208, 268
FriOI	GRGCYC	2 cut(s)	324, 648
FspBI	CTAG	2 cut(s)	24, 75
HaeIII	GGCC	2 cut(s)	465, 553
Hin1II	CATG	2 cut(s)	71, 358
HinfI	GANTC	2 cut(s)	202, 239
HphI	GGTGA	3 cut(s)	211, 533, 599
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188I	TCNGA	3 cut(s)	103, 310, 403
Hpy8I	GTNNAC	1 cut(s)	32
HpyAV	CCTTC	1 cut(s)	469
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4V	TGCA	4 cut(s)	32, 45, 497, 629
HpyF10VI	GCNNNNNNNGC	2 cut(s)	419, 550
HpyF3I	CTNAG	6 cut(s)	100, 121, 139, 300, 307, 381
Hsp92II	CATG	2 cut(s)	71, 358
Kzo9I	GATC	2 cut(s)	168, 589
LmnI	GCTCC	1 cut(s)	264
LpnPI	CCDG	7 cut(s)	195, 271, 372, 501, 534, 561, 627
MaeI	CTAG	2 cut(s)	24, 75
MaeIII	GTNAC	2 cut(s)	199, 598
MalI	GATC	2 cut(s)	170, 591
MboI	GATC	2 cut(s)	168, 589
MboII	GAAGA	5 cut(s)	64, 353, 374, 390, 458
MhlI	GDGCHC	4 cut(s)	34, 269, 324, 648
MlyI	GAGTC	2 cut(s)	196, 248
MnlI	CCTC	4 cut(s)	178, 295, 520, 562
MseI	TTAA	2 cut(s)	87, 510
MspA1I	CMGCKG	1 cut(s)	634
MspR9I	CCNGG	1 cut(s)	549
MvaI	CCWGG	1 cut(s)	549
MwoI	GCNNNNNNNGC	2 cut(s)	419, 550
NdeI	CATATG	2 cut(s)	149, 415
NdeII	GATC	2 cut(s)	168, 589
NlaIII	CATG	2 cut(s)	71, 358
NmuCI	GTSAC	2 cut(s)	199, 598
PflMI	CCANNNNNTGG	2 cut(s)	251, 560
PleI	GAGTC	2 cut(s)	196, 247
PpsI	GAGTC	2 cut(s)	196, 247
PshBI	ATTAAT	1 cut(s)	510
Psp124BI	GAGCTC	2 cut(s)	324, 648
Psp6I	CCWGG	1 cut(s)	547
PspGI	CCWGG	1 cut(s)	547
PspPI	GGNCC	1 cut(s)	551
PstNI	CAGNNNCTG	1 cut(s)	299
PvuII	CAGCTG	1 cut(s)	634
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SacI	GAGCTC	2 cut(s)	324, 648
SaqAI	TTAA	2 cut(s)	87, 510
Sau3AI	GATC	2 cut(s)	168, 589
Sau96I	GGNCC	1 cut(s)	551
SchI	GAGTC	2 cut(s)	196, 248
ScrFI	CCNGG	1 cut(s)	549
SduI	GDGCHC	4 cut(s)	34, 269, 324, 648
SetI	ASST	9 cut(s)	17, 120, 127, 161, 301, 306, 324, 636, 648
SfcI	CTRYAG	1 cut(s)	10
SspMI	CTAG	2 cut(s)	24, 75
SstI	GAGCTC	2 cut(s)	324, 648
StyD4I	CCNGG	1 cut(s)	547
TaaI	ACNGT	1 cut(s)	271
TaqI	TCGA	1 cut(s)	592
TatI	WGTACW	1 cut(s)	209
Tru1I	TTAA	2 cut(s)	87, 510
Tru9I	TTAA	2 cut(s)	87, 510
TseFI	GTSAC	2 cut(s)	199, 598
Tsp45I	GTSAC	2 cut(s)	199, 598
TspDTI	ATGAA	2 cut(s)	65, 397
TspGWI	ACGGA	1 cut(s)	212
Van91I	CCANNNNNTGG	2 cut(s)	251, 560
VneI	GTGCAC	1 cut(s)	30
VspI	ATTAAT	1 cut(s)	510
XapI	RAATTY	3 cut(s)	110, 233, 439
XspI	CTAG	2 cut(s)	24, 75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.