Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000453

Physical Location & Seq

Genomic Coordinates Reverse (-)

47488336 .. 47488758

Gene Structure 423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG419400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGAGACTGTCGTCCGTCGTCCCAGGAACGGTGACCGGTCGGAAGGTCCATGAGCTGACCAACGTGGACTTGGCTATGAAGCTACACTACATCAAAGGGGTCTACTTTTTCAACAGTGATGCAGTCGAGGGGCTTACGGTGTTTGACTTGAAGAAGCCTATGTTCATCCATTTGCTCCCACTATACTTCGTTGCCTCCGGGAGAATCCGAAGATCTGAAACGGGCCGGCCTTTCATCAAGTGTAATGACAGCGGTGTGAGAATTGTGGAGGCTCGTTGTGACGAAACGGTCGATGAATGGTTGGCCATGGCTGTGGAGGATGATTCTACTTTTGATGGTCTTGCTTATAATCAAACAATTGGTGAAACTGGTCTTGATTTCTCTCCTTTGGTCTTTATACAGGTTAAATCACTAGCTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009555 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016053 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048229 GO:0048856 GO:0071704 GO:0072330 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

140

Amino Acids

15.69

Weight (kDa)

5.76

Isoelectric Point (pI)

25.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	6 - 137	1.4e-14	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24510
fragaria_vesca	FvH4_5g34840 FvH4_5g34850
malus_domestica	MD08G1199200.v1.1 MD08G1199300.v1.1 MD15G1386300.v1.1 MD15G1386800.v1.1
prunus_persica	Prupe.1G533000_v2.0.a1
pyrus_communis	pycom08g17310 pycom15g34640 pycom15g34680
rosa_chinensis	RchiOBHm_Chr1g0364531 RchiOBHm_Chr4g0415781 RchiOBHm_Chr7g0232591 RchiOBHm_Chr7g0235521 RchiOBHm_Chr7g0235551 RchiOBHm_Chr7g0235561 RchiOBHm_Chr7g0235611 RchiOBHm_Chr7g0235721 RchiOBHm_Chr7g0235771
rosa_laevigata	RLG00000001141 RLG00000001147 RLG00000001148 RLG00000001151 RLG00000001152 RLG00000001321 RLG00000029743
rosa_multiflora	Rmu_co8320053.1_g000001 Rmu_co8402261.1_g000001 Rmu_co8447535.1_g000001 Rmu_sc0001912.1_g000001 Rmu_sc0001912.1_g000003 Rmu_sc0002617.1_g000016 Rmu_sc0002617.1_g000017 Rmu_sc0002892.1_g000022 Rmu_sc0002892.1_g000023 Rmu_sc0002892.1_g000041 Rmu_sc0002892.1_g000042 Rmu_sc0007994.1_g000006 Rmu_sc0010963.1_g000008 Rmu_sc0011151.1_g000005 Rmu_sc0012467.1_g000003 Rmu_ssc0000471.1_g000012 Rmu_ssc0000471.1_g000013
rosa_roxburghii	Rroxscaffold_3G00225680 Rroxscaffold_3G00225800 Rroxscaffold_3G00225870 Rroxscaffold_3G00228130 Rroxscaffold_6G00391050
rosa_rugosa	Rorug07G0275200 Rorug07G0291500.1 Rorug07G0292000 Rorug07G0292200 Rorug07G0292500 Rorug07G0295900
rosa_samantha	Rh7AG430000 Rh7AG446600 Rh7AG446800 Rh7AG447200 Rh7AG447300 Rh7AG447500 Rh7BG403500 Rh7BG418300 Rh7BG418400 Rh7BG418800 Rh7BG419000 Rh7BG419100 Rh7BG419300 Rh7BG419400 Rh7BG419500 Rh7BG419700 Rh7CG448700 Rh7CG466600 Rh7CG467000 Rh7CG467200 Rh7CG467300 Rh7CG467400 Rh7CG467500 Rh7CG468000 Rh7DG419700 Rh7DG435300 Rh7DG435400 Rh7DG435500 Rh7DG435600 Rh7DG436000 Rh7DG436500
rosa_wichuraiana	Rw0G011890 Rw7G035510 Rw7G037080 Rw7G037090 Rw7G037110 Rw7G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	348
AasI	GACNNNNNNGTC	1 cut(s)	287
AccI	GTMKAC	1 cut(s)	102
AciI	CCGC	1 cut(s)	252
AcoI	YGGCCR	1 cut(s)	303
AfiI	CCNNNNNNNGG	1 cut(s)	28
AgeI	ACCGGT	1 cut(s)	35
AgsI	TTSAA	2 cut(s)	112, 151
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	3 cut(s)	55, 82, 416
AluI	AGCT	3 cut(s)	55, 82, 416
AoxI	GGCC	3 cut(s)	223, 227, 303
AsiGI	ACCGGT	1 cut(s)	35
AspS9I	GGNCC	2 cut(s)	46, 223
AsuC2I	CCSGG	1 cut(s)	199
AsuHPI	GGTGA	2 cut(s)	43, 374
AvaII	GGWCC	1 cut(s)	46
BalI	TGGCCA	1 cut(s)	305
BarI	GAAGNNNNNNTAC	2 cut(s)	71, 103
BccI	CCATC	1 cut(s)	329
BciT130I	CCWGG	1 cut(s)	24
BcnI	CCSGG	1 cut(s)	199
BfaI	CTAG	1 cut(s)	413
BglII	AGATCT	1 cut(s)	212
Bme1390I	CCNGG	2 cut(s)	24, 199
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	2 cut(s)	46, 223
BmrFI	CCNGG	2 cut(s)	24, 199
BmsI	GCATC	1 cut(s)	109
BoxI	GACNNNNGTC	1 cut(s)	10
BpuMI	CCSGG	1 cut(s)	199
BsaJI	CCNNGG	2 cut(s)	22, 306
BsaWI	WCCGGW	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
Bse118I	RCCGGY	2 cut(s)	35, 225
Bse1I	ACTGG	1 cut(s)	373
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	2 cut(s)	22, 306
BseGI	GGATG	2 cut(s)	165, 325
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseNI	ACTGG	1 cut(s)	373
Bsh1285I	CGRYCG	2 cut(s)	40, 291
BshFI	GGCC	3 cut(s)	225, 229, 305
BshTI	ACCGGT	1 cut(s)	35
BsiEI	CGRYCG	2 cut(s)	40, 291
BsiSI	CCGG	3 cut(s)	36, 198, 226
BslFI	GGGAC	1 cut(s)	5
BslI	CCNNNNNNNGG	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	5
BsnI	GGCC	3 cut(s)	225, 229, 305
Bsp143I	GATC	1 cut(s)	212
Bsp19I	CCATGG	1 cut(s)	306
BspACI	CCGC	1 cut(s)	252
BspANI	GGCC	3 cut(s)	225, 229, 305
BsrFI	RCCGGY	2 cut(s)	35, 225
BsrI	ACTGG	1 cut(s)	373
BssAI	RCCGGY	2 cut(s)	35, 225
BssECI	CCNNGG	2 cut(s)	22, 306
BssMI	GATC	1 cut(s)	212
BssT1I	CCWWGG	1 cut(s)	306
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	5 cut(s)	9, 31, 116, 139, 289
BstC8I	GCNNGC	1 cut(s)	227
BstDSI	CCRYGG	1 cut(s)	306
BstEII	GGTNACC	1 cut(s)	31
BstF5I	GGATG	2 cut(s)	165, 325
BstKTI	GATC	1 cut(s)	215
BstMBI	GATC	1 cut(s)	212
BstMCI	CGRYCG	2 cut(s)	40, 291
BstNI	CCWGG	1 cut(s)	24
BstPAI	GACNNNNGTC	1 cut(s)	10
BstPI	GGTNACC	1 cut(s)	31
BstSCI	CCNGG	2 cut(s)	22, 197
BstX2I	RGATCY	1 cut(s)	212
BstXI	CCANNNNNNTGG	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	212
BsuRI	GGCC	3 cut(s)	225, 229, 305
BtgI	CCRYGG	1 cut(s)	306
BtsCI	GGATG	2 cut(s)	165, 325
BtsIMutI	CAGTG	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	227
Cfr10I	RCCGGY	2 cut(s)	35, 225
Cfr13I	GGNCC	2 cut(s)	46, 223
CspAI	ACCGGT	1 cut(s)	35
CviAII	CATG	2 cut(s)	50, 307
DpnI	GATC	1 cut(s)	214
DpnII	GATC	1 cut(s)	212
DrdI	GACNNNNNNGTC	1 cut(s)	287
DseDI	GACNNNNNNGTC	1 cut(s)	287
EaeI	YGGCCR	1 cut(s)	303
Eco130I	CCWWGG	1 cut(s)	306
Eco47I	GGWCC	1 cut(s)	46
Eco91I	GGTNACC	1 cut(s)	31
EcoO65I	GGTNACC	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	2 cut(s)	53, 310
FaiI	YATR	7 cut(s)	51, 77, 161, 184, 308, 348, 398
FaqI	GGGAC	1 cut(s)	5
FatI	CATG	2 cut(s)	49, 306
FblI	GTMKAC	1 cut(s)	102
FokI	GGATG	2 cut(s)	152, 332
FseI	GGCCGGCC	1 cut(s)	229
FspBI	CTAG	1 cut(s)	413
HaeIII	GGCC	3 cut(s)	225, 229, 305
HapII	CCGG	3 cut(s)	36, 198, 226
Hin1II	CATG	2 cut(s)	53, 310
HinfI	GANTC	2 cut(s)	204, 323
HpaII	CCGG	3 cut(s)	36, 198, 226
HphI	GGTGA	2 cut(s)	43, 374
Hpy166II	GTNNAC	2 cut(s)	67, 103
Hpy188I	TCNGA	3 cut(s)	42, 209, 217
Hpy188III	TCNNGA	1 cut(s)	374
Hpy8I	GTNNAC	2 cut(s)	67, 103
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	1 cut(s)	37
HpyCH4III	ACNGT	5 cut(s)	9, 31, 116, 139, 289
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	1 cut(s)	122
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	2 cut(s)	53, 310
KroI	GCCGGC	1 cut(s)	225
KroNI	GCCGGC	1 cut(s)	227
Kzo9I	GATC	1 cut(s)	212
LmnI	GCTCC	1 cut(s)	180
LpnPI	CCDG	7 cut(s)	9, 36, 49, 211, 239, 354, 386
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	413
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	2 cut(s)	31, 278
MalI	GATC	1 cut(s)	214
MboI	GATC	1 cut(s)	212
MboII	GAAGA	2 cut(s)	163, 222
MfeI	CAATTG	1 cut(s)	357
MflI	RGATCY	1 cut(s)	212
MlsI	TGGCCA	1 cut(s)	305
MluCI	AATT	2 cut(s)	261, 357
MluNI	TGGCCA	1 cut(s)	305
MmeI	TCCRAC	1 cut(s)	20
MnlI	CCTC	4 cut(s)	121, 205, 262, 310
Mox20I	TGGCCA	1 cut(s)	305
MroNI	GCCGGC	1 cut(s)	225
MscI	TGGCCA	1 cut(s)	305
MseI	TTAA	1 cut(s)	405
MslI	CAYNNNNRTG	1 cut(s)	311
Msp20I	TGGCCA	1 cut(s)	305
MspA1I	CMGCKG	1 cut(s)	252
MspI	CCGG	3 cut(s)	36, 198, 226
MspR9I	CCNGG	2 cut(s)	24, 199
MunI	CAATTG	1 cut(s)	357
MvaI	CCWGG	1 cut(s)	24
NaeI	GCCGGC	1 cut(s)	227
NciI	CCSGG	1 cut(s)	199
NcoI	CCATGG	1 cut(s)	306
NdeII	GATC	1 cut(s)	212
NgoMIV	GCCGGC	1 cut(s)	225
NlaIII	CATG	2 cut(s)	53, 310
NmuCI	GTSAC	2 cut(s)	31, 278
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PdiI	GCCGGC	1 cut(s)	227
PfeI	GAWTC	2 cut(s)	204, 323
PfoI	TCCNGGA	1 cut(s)	197
PinAI	ACCGGT	1 cut(s)	35
PshAI	GACNNNNGTC	1 cut(s)	10
PsiI	TTATAA	1 cut(s)	348
Psp6I	CCWGG	1 cut(s)	22
PspEI	GGTNACC	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	22
PspPI	GGNCC	2 cut(s)	46, 223
PsuI	RGATCY	1 cut(s)	212
RigI	GGCCGGCC	1 cut(s)	229
RseI	CAYNNNNRTG	1 cut(s)	311
SaqAI	TTAA	1 cut(s)	405
Sau3AI	GATC	1 cut(s)	212
Sau96I	GGNCC	2 cut(s)	46, 223
ScrFI	CCNGG	2 cut(s)	24, 199
SetI	ASST	6 cut(s)	48, 57, 66, 84, 405, 418
SfaNI	GCATC	1 cut(s)	109
SinI	GGWCC	1 cut(s)	46
SmiMI	CAYNNNNRTG	1 cut(s)	311
Sse9I	AATT	2 cut(s)	261, 357
SsiI	CCGC	1 cut(s)	252
SspMI	CTAG	1 cut(s)	413
StyD4I	CCNGG	2 cut(s)	22, 197
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	5 cut(s)	9, 31, 116, 139, 289
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	2 cut(s)	126, 291
TasI	AATT	2 cut(s)	261, 357
TfiI	GAWTC	2 cut(s)	204, 323
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	2 cut(s)	31, 278
Tsp45I	GTSAC	2 cut(s)	31, 278
TspDTI	ATGAA	4 cut(s)	92, 154, 223, 309
TspGWI	ACGGA	1 cut(s)	4
TspRI	CASTG	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	46
XcmI	CCANNNNNNNNNTGG	1 cut(s)	67
XmiI	GTMKAC	1 cut(s)	102
XspI	CTAG	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.