Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0000453

Physical Location & Seq

Genomic Coordinates Reverse (-)

25766397 .. 25767828

Gene Structure 1432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1199300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGTGTCATCAACCAGCTTGAGGCTGTCAACGGTTGTTCCAGCTACAAGGACAGGTGATGAAAACACGGTCCATGAGCTCACCAACATGGACTTGGCCATGAAGCTTCACTACATCAAAGGGGTCTACTTCTTCAAGAGTGAGGCAGTTGAGGGGCTTAAAATTTATGACTTGAAGAAACCTATGTTCCGGCTCCTGCAGCTCTACTTCACTGCCTCCAGGAGGATCCGGAGATCCAAAACTGGAAGGCCGTTCATCAAGTGTAACGACAGCGGTTTAAGAATTGTAGAAGCGCATTATGAAGAAATGGTTGATGAATGGTTTGCCAGGGCCATGGAGGACTCTTCTCTCTTAGATGGTCTTGCTTATAATCAAGCCCTTGGTCCTGATCTTGGTTACTCTCCTTTGGTCTTTTTACAGTTCACTTGGTTTAAATGTGGAGGAATGGCAGTGGAACTCAGCTGGGCCAACGTCCTTGGAGATGCATTTTCTACCTCAGCCTTCATGAACATGTGGGGGAAGATCATCGCAGGTCAAGTGCCGCGGAAGCTCCTCCACGTGCTACCTCCTGGAAAACCTGAATCCCCATCACTTTCTTCAGTACCCAAAACACCTTTTTCTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009555 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016053 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048229 GO:0048856 GO:0071704 GO:0072330 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

209

Amino Acids

23.36

Weight (kDa)

9.04

Isoelectric Point (pI)

37.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	10 - 181	2.4e-22	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24510
fragaria_vesca	FvH4_5g34840 FvH4_5g34850
malus_domestica	MD08G1199200.v1.1 MD08G1199300.v1.1 MD15G1386300.v1.1 MD15G1386800.v1.1
prunus_persica	Prupe.1G533000_v2.0.a1
pyrus_communis	pycom08g17310 pycom15g34640 pycom15g34680
rosa_chinensis	RchiOBHm_Chr1g0364531 RchiOBHm_Chr4g0415781 RchiOBHm_Chr7g0232591 RchiOBHm_Chr7g0235521 RchiOBHm_Chr7g0235551 RchiOBHm_Chr7g0235561 RchiOBHm_Chr7g0235611 RchiOBHm_Chr7g0235721 RchiOBHm_Chr7g0235771
rosa_laevigata	RLG00000001141 RLG00000001147 RLG00000001148 RLG00000001151 RLG00000001152 RLG00000001321 RLG00000029743
rosa_multiflora	Rmu_co8320053.1_g000001 Rmu_co8402261.1_g000001 Rmu_co8447535.1_g000001 Rmu_sc0001912.1_g000001 Rmu_sc0001912.1_g000003 Rmu_sc0002617.1_g000016 Rmu_sc0002617.1_g000017 Rmu_sc0002892.1_g000022 Rmu_sc0002892.1_g000023 Rmu_sc0002892.1_g000041 Rmu_sc0002892.1_g000042 Rmu_sc0007994.1_g000006 Rmu_sc0010963.1_g000008 Rmu_sc0011151.1_g000005 Rmu_sc0012467.1_g000003 Rmu_ssc0000471.1_g000012 Rmu_ssc0000471.1_g000013
rosa_roxburghii	Rroxscaffold_3G00225680 Rroxscaffold_3G00225800 Rroxscaffold_3G00225870 Rroxscaffold_3G00228130 Rroxscaffold_6G00391050
rosa_rugosa	Rorug07G0275200 Rorug07G0291500.1 Rorug07G0292000 Rorug07G0292200 Rorug07G0292500 Rorug07G0295900
rosa_samantha	Rh7AG430000 Rh7AG446600 Rh7AG446800 Rh7AG447200 Rh7AG447300 Rh7AG447500 Rh7BG403500 Rh7BG418300 Rh7BG418400 Rh7BG418800 Rh7BG419000 Rh7BG419100 Rh7BG419300 Rh7BG419400 Rh7BG419500 Rh7BG419700 Rh7CG448700 Rh7CG466600 Rh7CG467000 Rh7CG467200 Rh7CG467300 Rh7CG467400 Rh7CG467500 Rh7CG468000 Rh7DG419700 Rh7DG435300 Rh7DG435400 Rh7DG435500 Rh7DG435600 Rh7DG436000 Rh7DG436500
rosa_wichuraiana	Rw0G011890 Rw7G035510 Rw7G037080 Rw7G037090 Rw7G037110 Rw7G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	369
Acc36I	ACCTGC	1 cut(s)	521
AccI	GTMKAC	1 cut(s)	126
AccII	CGCG	1 cut(s)	544
AccIII	TCCGGA	1 cut(s)	228
AciI	CCGC	3 cut(s)	273, 542, 544
AclWI	GGATC	3 cut(s)	220, 228, 233
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	162
AcuI	CTGAAG	1 cut(s)	582
AcvI	CACGTG	1 cut(s)	559
AfaI	GTAC	1 cut(s)	603
AfiI	CCNNNNNNNGG	3 cut(s)	21, 222, 392
AflIII	ACRYGT	1 cut(s)	510
AgsI	TTSAA	2 cut(s)	136, 175
AjnI	CCWGG	3 cut(s)	218, 326, 568
AluBI	AGCT	7 cut(s)	18, 44, 79, 106, 202, 462, 550
AluI	AGCT	7 cut(s)	18, 44, 79, 106, 202, 462, 550
Alw21I	GWGCWC	1 cut(s)	81
AlwI	GGATC	3 cut(s)	220, 228, 233
Aor13HI	TCCGGA	1 cut(s)	228
AoxI	GGCC	4 cut(s)	96, 248, 330, 465
ApeKI	GCWGC	1 cut(s)	199
ApoI	RAATTY	1 cut(s)	162
AspLEI	GCGC	1 cut(s)	295
AspS9I	GGNCC	4 cut(s)	70, 330, 383, 465
AsuHPI	GGTGA	2 cut(s)	68, 73
AvaII	GGWCC	2 cut(s)	70, 383
BalI	TGGCCA	1 cut(s)	98
BamHI	GGATCC	1 cut(s)	225
BanII	GRGCYC	1 cut(s)	81
BarI	GAAGNNNNNNTAC	2 cut(s)	95, 127
BbrPI	CACGTG	1 cut(s)	559
Bbv12I	GWGCWC	1 cut(s)	81
BbvCI	CCTCAGC	1 cut(s)	496
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	2 cut(s)	350, 595
BceAI	ACGGC	1 cut(s)	235
BciT130I	CCWGG	3 cut(s)	220, 328, 570
BfmI	CTRYAG	1 cut(s)	197
BfuAI	ACCTGC	1 cut(s)	521
BisI	GCNGC	2 cut(s)	200, 542
BlsI	GCNGC	2 cut(s)	201, 543
Bme1390I	CCNGG	3 cut(s)	220, 328, 570
Bme18I	GGWCC	2 cut(s)	70, 383
BmgT120I	GGNCC	4 cut(s)	70, 330, 383, 465
BmiI	GGNNCC	2 cut(s)	194, 227
BmrFI	CCNGG	3 cut(s)	220, 328, 570
BmsI	GCATC	1 cut(s)	472
BpmI	CTGGAG	1 cut(s)	202
Bpu10I	CCTNAGC	1 cut(s)	496
BpuEI	CTTGAG	1 cut(s)	40
BsaAI	YACGTR	1 cut(s)	559
BsaJI	CCNNGG	5 cut(s)	327, 333, 379, 475, 542
BsaWI	WCCGGW	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	3 cut(s)	21, 222, 392
Bse1I	ACTGG	1 cut(s)	247
BseAI	TCCGGA	1 cut(s)	228
BseBI	CCWGG	3 cut(s)	220, 328, 570
BseDI	CCNNGG	5 cut(s)	327, 333, 379, 475, 542
BseLI	CCNNNNNNNGG	3 cut(s)	21, 222, 392
BseMII	CTCAG	2 cut(s)	472, 510
BseNI	ACTGG	1 cut(s)	247
BseRI	GAGGAG	1 cut(s)	542
BseXI	GCAGC	1 cut(s)	211
BseYI	CCCAGC	1 cut(s)	462
Bsh1236I	CGCG	1 cut(s)	544
BshFI	GGCC	4 cut(s)	98, 250, 332, 467
BsiHKAI	GWGCWC	1 cut(s)	81
BsiSI	CCGG	2 cut(s)	190, 229
BslI	CCNNNNNNNGG	3 cut(s)	21, 222, 392
BsnI	GGCC	4 cut(s)	98, 250, 332, 467
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp13I	TCCGGA	1 cut(s)	228
Bsp143I	GATC	4 cut(s)	225, 233, 388, 522
Bsp19I	CCATGG	1 cut(s)	333
BspACI	CCGC	3 cut(s)	273, 542, 544
BspANI	GGCC	4 cut(s)	98, 250, 332, 467
BspCNI	CTCAG	2 cut(s)	471, 509
BspEI	TCCGGA	1 cut(s)	228
BspFNI	CGCG	1 cut(s)	544
BspHI	TCATGA	1 cut(s)	504
BspLI	GGNNCC	2 cut(s)	194, 227
BspMAI	CTGCAG	1 cut(s)	201
BspMI	ACCTGC	1 cut(s)	521
BspPI	GGATC	3 cut(s)	220, 228, 233
BsrI	ACTGG	1 cut(s)	247
BssECI	CCNNGG	5 cut(s)	327, 333, 379, 475, 542
BssMI	GATC	4 cut(s)	225, 233, 388, 522
BssT1I	CCWWGG	3 cut(s)	333, 379, 475
Bst2UI	CCWGG	3 cut(s)	220, 328, 570
Bst4CI	ACNGT	3 cut(s)	34, 70, 420
Bst6I	CTCTTC	1 cut(s)	349
BstBAI	YACGTR	1 cut(s)	559
BstDEI	CTNAG	3 cut(s)	352, 458, 496
BstDSI	CCRYGG	2 cut(s)	333, 542
BstENI	CCTNNNNNAGG	1 cut(s)	220
BstFNI	CGCG	1 cut(s)	544
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	4 cut(s)	228, 236, 391, 525
BstMBI	GATC	4 cut(s)	225, 233, 388, 522
BstMWI	GCNNNNNNNGC	2 cut(s)	199, 547
BstNI	CCWGG	3 cut(s)	220, 328, 570
BstNSI	RCATGY	1 cut(s)	514
BstSCI	CCNGG	3 cut(s)	218, 326, 568
BstSFI	CTRYAG	1 cut(s)	197
BstUI	CGCG	1 cut(s)	544
BstV1I	GCAGC	1 cut(s)	211
BstX2I	RGATCY	2 cut(s)	225, 233
BstXI	CCANNNNNNTGG	1 cut(s)	334
BstYI	RGATCY	2 cut(s)	225, 233
BsuRI	GGCC	4 cut(s)	98, 250, 332, 467
BtgI	CCRYGG	2 cut(s)	333, 542
BtgZI	GCGATG	1 cut(s)	511
BtsI	GCAGTG	2 cut(s)	210, 456
BtsIMutI	CAGTG	2 cut(s)	210, 456
BveI	ACCTGC	1 cut(s)	521
CciI	TCATGA	1 cut(s)	504
CfoI	GCGC	1 cut(s)	295
Cfr13I	GGNCC	4 cut(s)	70, 330, 383, 465
Cfr42I	CCGCGG	1 cut(s)	545
Csp6I	GTAC	1 cut(s)	602
CviAII	CATG	6 cut(s)	74, 88, 100, 334, 505, 511
CviQI	GTAC	1 cut(s)	602
DdeI	CTNAG	3 cut(s)	352, 458, 496
DpnI	GATC	4 cut(s)	227, 235, 390, 524
DpnII	GATC	4 cut(s)	225, 233, 388, 522
DraI	TTTAAA	1 cut(s)	433
EaeI	YGGCCR	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	349
EarI	CTCTTC	1 cut(s)	349
Ecl136II	GAGCTC	1 cut(s)	79
Eco130I	CCWWGG	3 cut(s)	333, 379, 475
Eco24I	GRGCYC	1 cut(s)	81
Eco47I	GGWCC	2 cut(s)	70, 383
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	582
Eco72I	CACGTG	1 cut(s)	559
EcoICRI	GAGCTC	1 cut(s)	79
EcoNI	CCTNNNNNAGG	1 cut(s)	220
EcoRII	CCWGG	3 cut(s)	218, 326, 568
EcoT14I	CCWWGG	3 cut(s)	333, 379, 475
EcoT22I	ATGCAT	1 cut(s)	487
EcoT38I	GRGCYC	1 cut(s)	81
ErhI	CCWWGG	3 cut(s)	333, 379, 475
FaeI	CATG	6 cut(s)	77, 91, 103, 337, 508, 514
FatI	CATG	6 cut(s)	73, 87, 99, 333, 504, 510
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	2 cut(s)	200, 542
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	2 cut(s)	200, 542
GlaI	GCGC	1 cut(s)	294
GluI	GCNGC	2 cut(s)	200, 542
GsaI	CCCAGC	1 cut(s)	466
GsuI	CTGGAG	1 cut(s)	202
HaeIII	GGCC	4 cut(s)	98, 250, 332, 467
HapII	CCGG	2 cut(s)	190, 229
HhaI	GCGC	1 cut(s)	295
Hin1II	CATG	6 cut(s)	77, 91, 103, 337, 508, 514
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	2 cut(s)	341, 581
HpaII	CCGG	2 cut(s)	190, 229
HphI	GGTGA	2 cut(s)	68, 73
Hpy166II	GTNNAC	3 cut(s)	30, 127, 423
Hpy188III	TCNNGA	4 cut(s)	136, 229, 386, 505
Hpy8I	GTNNAC	3 cut(s)	30, 127, 423
HpyAV	CCTTC	2 cut(s)	240, 511
HpyCH4III	ACNGT	3 cut(s)	34, 70, 420
HpyCH4IV	ACGT	2 cut(s)	471, 558
HpyCH4V	TGCA	2 cut(s)	199, 485
HpyF10VI	GCNNNNNNNGC	2 cut(s)	199, 547
HpyF3I	CTNAG	3 cut(s)	352, 458, 496
HpySE526I	ACGT	2 cut(s)	471, 558
Hsp92II	CATG	6 cut(s)	77, 91, 103, 337, 508, 514
HspAI	GCGC	1 cut(s)	293
Kpn2I	TCCGGA	1 cut(s)	228
KspI	CCGCGG	1 cut(s)	545
Kzo9I	GATC	4 cut(s)	225, 233, 388, 522
LmnI	GCTCC	2 cut(s)	198, 555
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	1 cut(s)	472
MaeII	ACGT	2 cut(s)	471, 558
MaeIII	GTNAC	2 cut(s)	263, 395
MalI	GATC	4 cut(s)	227, 235, 390, 524
MboI	GATC	4 cut(s)	225, 233, 388, 522
MboII	GAAGA	6 cut(s)	124, 187, 314, 336, 532, 588
MflI	RGATCY	2 cut(s)	225, 233
MhlI	GDGCHC	1 cut(s)	81
MlsI	TGGCCA	1 cut(s)	98
MluCI	AATT	2 cut(s)	162, 282
MluNI	TGGCCA	1 cut(s)	98
MlyI	GAGTC	1 cut(s)	335
Mox20I	TGGCCA	1 cut(s)	98
Mph1103I	ATGCAT	1 cut(s)	487
MroI	TCCGGA	1 cut(s)	228
MscI	TGGCCA	1 cut(s)	98
MseI	TTAA	3 cut(s)	159, 278, 432
MslI	CAYNNNNRTG	2 cut(s)	86, 509
Msp20I	TGGCCA	1 cut(s)	98
MspA1I	CMGCKG	3 cut(s)	273, 462, 544
MspI	CCGG	2 cut(s)	190, 229
MspR9I	CCNGG	3 cut(s)	220, 328, 570
MvaI	CCWGG	3 cut(s)	220, 328, 570
MvnI	CGCG	1 cut(s)	544
MwoI	GCNNNNNNNGC	2 cut(s)	199, 547
NcoI	CCATGG	1 cut(s)	333
NdeII	GATC	4 cut(s)	225, 233, 388, 522
NlaIII	CATG	6 cut(s)	77, 91, 103, 337, 508, 514
NlaIV	GGNNCC	2 cut(s)	194, 227
NsiI	ATGCAT	1 cut(s)	487
NspI	RCATGY	1 cut(s)	514
PagI	TCATGA	1 cut(s)	504
PciI	ACATGT	1 cut(s)	510
PfeI	GAWTC	1 cut(s)	581
PfoI	TCCNGGA	2 cut(s)	218, 568
PkrI	GCNGC	2 cut(s)	201, 543
PleI	GAGTC	1 cut(s)	335
PmaCI	CACGTG	1 cut(s)	559
PmlI	CACGTG	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	335
Ppu21I	YACGTR	1 cut(s)	559
PscI	ACATGT	1 cut(s)	510
PsiI	TTATAA	1 cut(s)	369
Psp124BI	GAGCTC	1 cut(s)	81
Psp6I	CCWGG	3 cut(s)	218, 326, 568
PspCI	CACGTG	1 cut(s)	559
PspFI	CCCAGC	1 cut(s)	462
PspGI	CCWGG	3 cut(s)	218, 326, 568
PspN4I	GGNNCC	2 cut(s)	194, 227
PspPI	GGNCC	4 cut(s)	70, 330, 383, 465
PstI	CTGCAG	1 cut(s)	201
PsuI	RGATCY	2 cut(s)	225, 233
PvuII	CAGCTG	1 cut(s)	462
RsaI	GTAC	1 cut(s)	603
RsaNI	GTAC	1 cut(s)	602
RseI	CAYNNNNRTG	2 cut(s)	86, 509
SacI	GAGCTC	1 cut(s)	81
SacII	CCGCGG	1 cut(s)	545
SaqAI	TTAA	3 cut(s)	159, 278, 432
SatI	GCNGC	2 cut(s)	200, 542
Sau3AI	GATC	4 cut(s)	225, 233, 388, 522
Sau96I	GGNCC	4 cut(s)	70, 330, 383, 465
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	3 cut(s)	220, 328, 570
SduI	GDGCHC	1 cut(s)	81
SfaNI	GCATC	1 cut(s)	472
SfcI	CTRYAG	1 cut(s)	197
Sfr303I	CCGCGG	1 cut(s)	545
SgrBI	CCGCGG	1 cut(s)	545
SinI	GGWCC	2 cut(s)	70, 383
SmiMI	CAYNNNNRTG	2 cut(s)	86, 509
SmlI	CTYRAG	1 cut(s)	19
SmoI	CTYRAG	1 cut(s)	19
Sse9I	AATT	2 cut(s)	162, 282
SsiI	CCGC	3 cut(s)	273, 542, 544
SstI	GAGCTC	1 cut(s)	81
StyD4I	CCNGG	3 cut(s)	218, 326, 568
StyI	CCWWGG	3 cut(s)	333, 379, 475
TaaI	ACNGT	3 cut(s)	34, 70, 420
TaiI	ACGT	2 cut(s)	474, 561
TasI	AATT	2 cut(s)	162, 282
TauI	GCSGC	1 cut(s)	544
TfiI	GAWTC	1 cut(s)	581
Tru1I	TTAA	3 cut(s)	159, 278, 432
Tru9I	TTAA	3 cut(s)	159, 278, 432
TscAI	CASTG	2 cut(s)	217, 456
TseI	GCWGC	1 cut(s)	199
TspDTI	ATGAA	7 cut(s)	75, 116, 244, 315, 330, 493, 521
TspRI	CASTG	2 cut(s)	217, 456
VpaK11BI	GGWCC	2 cut(s)	70, 383
XagI	CCTNNNNNAGG	1 cut(s)	220
XapI	RAATTY	1 cut(s)	162
XceI	RCATGY	1 cut(s)	514
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XmiI	GTMKAC	1 cut(s)	126
Zsp2I	ATGCAT	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.