RchiOBHm_Chr1g0364531

Transferase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
55688853 .. 55690010
1158 bp
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UTR
Exon/CDS
Intron
PRQ58921

Sequence Viewer

Length: 180 bp
ATGGACTTGGCTATGAAGCTTCACTACATCAAAGGGATCTACCTTTTCCAAAGTGATGCAGTTAAGGGGCTTGCGGTGAATGACTTAAAGAAGCCTATGTTCCAACTGCTCCAACTATACTTCGCCGGTCTCTGGGAGAATCCGGAGATCCAGAACAAGCCGGCCATTCCTCGTGTGTAA

Protein Analysis

59

Amino Acids

6.82

Weight (kDa)

9.1

Isoelectric Point (pI)

32.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24510
fragaria_vesca FvH4_5g34840 FvH4_5g34850
malus_domestica MD08G1199200.v1.1 MD08G1199300.v1.1 MD15G1386300.v1.1 MD15G1386800.v1.1
prunus_persica Prupe.1G533000_v2.0.a1
pyrus_communis pycom08g17310 pycom15g34640 pycom15g34680
rosa_chinensis RchiOBHm_Chr1g0364531 RchiOBHm_Chr4g0415781 RchiOBHm_Chr7g0232591 RchiOBHm_Chr7g0235521 RchiOBHm_Chr7g0235551 RchiOBHm_Chr7g0235561 RchiOBHm_Chr7g0235611 RchiOBHm_Chr7g0235721 RchiOBHm_Chr7g0235771
rosa_laevigata RLG00000001141 RLG00000001147 RLG00000001148 RLG00000001151 RLG00000001152 RLG00000001321 RLG00000029743
rosa_multiflora Rmu_co8320053.1_g000001 Rmu_co8402261.1_g000001 Rmu_co8447535.1_g000001 Rmu_sc0001912.1_g000001 Rmu_sc0001912.1_g000003 Rmu_sc0002617.1_g000016 Rmu_sc0002617.1_g000017 Rmu_sc0002892.1_g000022 Rmu_sc0002892.1_g000023 Rmu_sc0002892.1_g000041 Rmu_sc0002892.1_g000042 Rmu_sc0007994.1_g000006 Rmu_sc0010963.1_g000008 Rmu_sc0011151.1_g000005 Rmu_sc0012467.1_g000003 Rmu_ssc0000471.1_g000012 Rmu_ssc0000471.1_g000013
rosa_roxburghii Rroxscaffold_3G00225680 Rroxscaffold_3G00225800 Rroxscaffold_3G00225870 Rroxscaffold_3G00228130 Rroxscaffold_6G00391050
rosa_rugosa Rorug07G0275200 Rorug07G0291500.1 Rorug07G0292000 Rorug07G0292200 Rorug07G0292500 Rorug07G0295900
rosa_samantha Rh7AG430000 Rh7AG446600 Rh7AG446800 Rh7AG447200 Rh7AG447300 Rh7AG447500 Rh7BG403500 Rh7BG418300 Rh7BG418400 Rh7BG418800 Rh7BG419000 Rh7BG419100 Rh7BG419300 Rh7BG419400 Rh7BG419500 Rh7BG419700 Rh7CG448700 Rh7CG466600 Rh7CG467000 Rh7CG467200 Rh7CG467300 Rh7CG467400 Rh7CG467500 Rh7CG468000 Rh7DG419700 Rh7DG435300 Rh7DG435400 Rh7DG435500 Rh7DG435600 Rh7DG436000 Rh7DG436500
rosa_wichuraiana Rw0G011890 Rw7G035510 Rw7G037080 Rw7G037090 Rw7G037110 Rw7G037180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 142
AciI CCGC 1 cut(s) 74
AclWI GGATC 2 cut(s) 44, 142
AcoI YGGCCR 1 cut(s) 162
AfiI CCNNNNNNNGG 1 cut(s) 132
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 2 cut(s) 44, 142
Aor13HI TCCGGA 1 cut(s) 142
AoxI GGCC 1 cut(s) 162
AsuHPI GGTGA 1 cut(s) 88
BarI GAAGNNNNNNTAC 2 cut(s) 8, 40
BauI CACGAG 1 cut(s) 171
BcoDI GTCTC 1 cut(s) 134
BmsI GCATC 1 cut(s) 46
BsaI GGTCTC 1 cut(s) 134
BsaWI WCCGGW 1 cut(s) 142
Bsc4I CCNNNNNNNGG 1 cut(s) 132
Bse118I RCCGGY 2 cut(s) 125, 160
BseAI TCCGGA 1 cut(s) 142
BseLI CCNNNNNNNGG 1 cut(s) 132
BshFI GGCC 1 cut(s) 164
BsiSI CCGG 3 cut(s) 126, 143, 161
BslI CCNNNNNNNGG 1 cut(s) 132
BsmAI GTCTC 1 cut(s) 134
BsnI GGCC 1 cut(s) 164
Bso31I GGTCTC 1 cut(s) 134
Bsp13I TCCGGA 1 cut(s) 142
Bsp143I GATC 2 cut(s) 36, 147
BspACI CCGC 1 cut(s) 74
BspANI GGCC 1 cut(s) 164
BspEI TCCGGA 1 cut(s) 142
BspPI GGATC 2 cut(s) 44, 142
BspTNI GGTCTC 1 cut(s) 134
BsrFI RCCGGY 2 cut(s) 125, 160
BssAI RCCGGY 2 cut(s) 125, 160
BssMI GATC 2 cut(s) 36, 147
BssSI CACGAG 1 cut(s) 171
Bst2BI CACGAG 1 cut(s) 171
BstC8I GCNNGC 2 cut(s) 72, 162
BstKTI GATC 2 cut(s) 39, 150
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 2 cut(s) 36, 147
BstX2I RGATCY 2 cut(s) 36, 147
BstYI RGATCY 2 cut(s) 36, 147
BsuRI GGCC 1 cut(s) 164
Cac8I GCNNGC 2 cut(s) 72, 162
Cfr10I RCCGGY 2 cut(s) 125, 160
CviJI RGCY 6 cut(s) 11, 19, 70, 94, 160, 164
CviKI_1 RGCY 6 cut(s) 11, 19, 70, 94, 160, 164
DpnI GATC 2 cut(s) 38, 149
DpnII GATC 2 cut(s) 36, 147
EaeI YGGCCR 1 cut(s) 162
Eco31I GGTCTC 1 cut(s) 134
FaiI YATR 3 cut(s) 14, 98, 118
HaeIII GGCC 1 cut(s) 164
HapII CCGG 3 cut(s) 126, 143, 161
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 1 cut(s) 139
HpaII CCGG 3 cut(s) 126, 143, 161
HphI GGTGA 1 cut(s) 88
Hpy188III TCNNGA 2 cut(s) 143, 151
HpyCH4V TGCA 1 cut(s) 59
Kpn2I TCCGGA 1 cut(s) 142
KroI GCCGGC 1 cut(s) 160
KroNI GCCGGC 1 cut(s) 162
Kzo9I GATC 2 cut(s) 36, 147
LmnI GCTCC 1 cut(s) 114
LpnPI CCDG 5 cut(s) 118, 139, 156, 164, 174
LweI GCATC 1 cut(s) 46
MalI GATC 2 cut(s) 38, 149
MboI GATC 2 cut(s) 36, 147
MflI RGATCY 2 cut(s) 36, 147
MmeI TCCRAC 2 cut(s) 127, 136
MnlI CCTC 1 cut(s) 180
MroI TCCGGA 1 cut(s) 142
MroNI GCCGGC 1 cut(s) 160
MseI TTAA 2 cut(s) 63, 86
MspI CCGG 3 cut(s) 126, 143, 161
NaeI GCCGGC 1 cut(s) 162
NdeII GATC 2 cut(s) 36, 147
NgoMIV GCCGGC 1 cut(s) 160
PdiI GCCGGC 1 cut(s) 162
PfeI GAWTC 1 cut(s) 139
PsuI RGATCY 2 cut(s) 36, 147
SaqAI TTAA 2 cut(s) 63, 86
Sau3AI GATC 2 cut(s) 36, 147
SetI ASST 2 cut(s) 21, 45
SfaNI GCATC 1 cut(s) 46
SgeI CNNG 8 cut(s) 19, 83, 138, 145, 155, 163, 169, 173
SsiI CCGC 1 cut(s) 74
TfiI GAWTC 1 cut(s) 139
Tru1I TTAA 2 cut(s) 63, 86
Tru9I TTAA 2 cut(s) 63, 86
TspDTI ATGAA 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.