Rh7BG418300

Transferase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Reverse (-)
47318906 .. 47319349
444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG418300.1

Sequence Viewer

Length: 444 bp
ATGTCAGTGGGAATTAGCTGGGCAAATGTCCTTGGAGATGCATTTTCAGCCTCAACCTTCGTCAACCTGTGGGGGAAGACCATGGCAAGTTACGTGCCTCACAAGTCACTGCACGTACCAGACTGGCCTGCAAAACCTGAGCTCCCACTTTCAGTTCTTCCCAAGGTAACACCAAACGCCCTTAAAAGGATTGATTCAGTTGGCGACTTATGGCTCACACCCAACAACTGCAAGATGAAGACACATATTTTCCATGTTCCTGGAGCGAAAATTAACCATTTTCTCTCAGACCAAAAATTCAAGGTCTCAGCTTTTGAAGTATTCTCAGCAATCATATGGAAAACCTTGTCCAAGATCAAGGAAAACCCAGAGGAGACAAGGATGGTGACTCTTTGTACAAACAAACTCCGTGAAAGAGAATTTGAGTCTCCAAGTGTTGAGTAA

Protein Analysis

147

Amino Acids

16.58

Weight (kDa)

9.15

Isoelectric Point (pI)

38.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24510
fragaria_vesca FvH4_5g34840 FvH4_5g34850
malus_domestica MD08G1199200.v1.1 MD08G1199300.v1.1 MD15G1386300.v1.1 MD15G1386800.v1.1
prunus_persica Prupe.1G533000_v2.0.a1
pyrus_communis pycom08g17310 pycom15g34640 pycom15g34680
rosa_chinensis RchiOBHm_Chr1g0364531 RchiOBHm_Chr4g0415781 RchiOBHm_Chr7g0232591 RchiOBHm_Chr7g0235521 RchiOBHm_Chr7g0235551 RchiOBHm_Chr7g0235561 RchiOBHm_Chr7g0235611 RchiOBHm_Chr7g0235721 RchiOBHm_Chr7g0235771
rosa_laevigata RLG00000001141 RLG00000001147 RLG00000001148 RLG00000001151 RLG00000001152 RLG00000001321 RLG00000029743
rosa_multiflora Rmu_co8320053.1_g000001 Rmu_co8402261.1_g000001 Rmu_co8447535.1_g000001 Rmu_sc0001912.1_g000001 Rmu_sc0001912.1_g000003 Rmu_sc0002617.1_g000016 Rmu_sc0002617.1_g000017 Rmu_sc0002892.1_g000022 Rmu_sc0002892.1_g000023 Rmu_sc0002892.1_g000041 Rmu_sc0002892.1_g000042 Rmu_sc0007994.1_g000006 Rmu_sc0010963.1_g000008 Rmu_sc0011151.1_g000005 Rmu_sc0012467.1_g000003 Rmu_ssc0000471.1_g000012 Rmu_ssc0000471.1_g000013
rosa_roxburghii Rroxscaffold_3G00225680 Rroxscaffold_3G00225800 Rroxscaffold_3G00225870 Rroxscaffold_3G00228130 Rroxscaffold_6G00391050
rosa_rugosa Rorug07G0275200 Rorug07G0291500.1 Rorug07G0292000 Rorug07G0292200 Rorug07G0292500 Rorug07G0295900
rosa_samantha Rh7AG430000 Rh7AG446600 Rh7AG446800 Rh7AG447200 Rh7AG447300 Rh7AG447500 Rh7BG403500 Rh7BG418300 Rh7BG418400 Rh7BG418800 Rh7BG419000 Rh7BG419100 Rh7BG419300 Rh7BG419400 Rh7BG419500 Rh7BG419700 Rh7CG448700 Rh7CG466600 Rh7CG467000 Rh7CG467200 Rh7CG467300 Rh7CG467400 Rh7CG467500 Rh7CG468000 Rh7DG419700 Rh7DG435300 Rh7DG435400 Rh7DG435500 Rh7DG435600 Rh7DG436000 Rh7DG436500
rosa_wichuraiana Rw0G011890 Rw7G035510 Rw7G037080 Rw7G037090 Rw7G037110 Rw7G037180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 296, 419
AfaI GTAC 2 cut(s) 117, 397
AfiI CCNNNNNNNGG 1 cut(s) 186
AgsI TTSAA 2 cut(s) 301, 317
AjnI CCWGG 1 cut(s) 259
AluBI AGCT 3 cut(s) 18, 142, 311
AluI AGCT 3 cut(s) 18, 142, 311
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 3 cut(s) 310, 368, 432
AoxI GGCC 1 cut(s) 125
ApoI RAATTY 2 cut(s) 296, 419
AsuHPI GGTGA 1 cut(s) 397
BanII GRGCYC 1 cut(s) 144
BbsI GAAGAC 2 cut(s) 83, 245
Bbv12I GWGCWC 1 cut(s) 144
BccI CCATC 1 cut(s) 376
BciT130I CCWGG 1 cut(s) 261
BcoDI GTCTC 3 cut(s) 310, 368, 432
Bme1390I CCNGG 1 cut(s) 261
BmrFI CCNGG 1 cut(s) 261
BmsI GCATC 1 cut(s) 28
BpiI GAAGAC 2 cut(s) 83, 245
BpmI CTGGAG 1 cut(s) 282
Bpu10I CCTNAGC 1 cut(s) 138
BsaAI YACGTR 2 cut(s) 94, 115
BsaI GGTCTC 1 cut(s) 310
BsaJI CCNNGG 3 cut(s) 31, 81, 162
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bsc4I CCNNNNNNNGG 1 cut(s) 186
Bse1I ACTGG 1 cut(s) 128
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 3 cut(s) 31, 81, 162
BseGI GGATG 1 cut(s) 387
BseLI CCNNNNNNNGG 1 cut(s) 186
BseMII CTCAG 4 cut(s) 129, 300, 321, 339
BseNI ACTGG 1 cut(s) 128
BseRI GAGGAG 1 cut(s) 386
BseYI CCCAGC 1 cut(s) 18
BsgI GTGCAG 1 cut(s) 95
BshFI GGCC 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 144
BslI CCNNNNNNNGG 1 cut(s) 186
BsmAI GTCTC 3 cut(s) 310, 368, 432
BsnI GGCC 1 cut(s) 127
Bso31I GGTCTC 1 cut(s) 310
Bsp1286I GDGCHC 1 cut(s) 144
Bsp1407I TGTACA 1 cut(s) 395
Bsp143I GATC 1 cut(s) 354
Bsp19I CCATGG 1 cut(s) 81
BspANI GGCC 1 cut(s) 127
BspCNI CTCAG 4 cut(s) 130, 299, 320, 338
BspTNI GGTCTC 1 cut(s) 310
BsrGI TGTACA 1 cut(s) 395
BsrI ACTGG 1 cut(s) 128
BssECI CCNNGG 3 cut(s) 31, 81, 162
BssMI GATC 1 cut(s) 354
BssT1I CCWWGG 3 cut(s) 31, 81, 162
Bst2UI CCWGG 1 cut(s) 261
BstAUI TGTACA 1 cut(s) 395
BstBAI YACGTR 2 cut(s) 94, 115
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 4 cut(s) 138, 286, 307, 325
BstDSI CCRYGG 1 cut(s) 81
BstF5I GGATG 1 cut(s) 387
BstKTI GATC 1 cut(s) 357
BstMAI GTCTC 3 cut(s) 310, 368, 432
BstMBI GATC 1 cut(s) 354
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstNI CCWGG 1 cut(s) 261
BstSCI CCNGG 1 cut(s) 259
BstV2I GAAGAC 2 cut(s) 83, 245
BstXI CCANNNNNNTGG 1 cut(s) 260
BsuRI GGCC 1 cut(s) 127
BtgI CCRYGG 1 cut(s) 81
BtsCI GGATG 1 cut(s) 387
BtsI GCAGTG 1 cut(s) 107
BtsIMutI CAGTG 2 cut(s) 12, 107
Cac8I GCNNGC 1 cut(s) 129
Csp6I GTAC 2 cut(s) 116, 396
CviAII CATG 2 cut(s) 82, 254
CviJI RGCY 6 cut(s) 18, 50, 127, 142, 214, 311
CviKI_1 RGCY 6 cut(s) 18, 50, 127, 142, 214, 311
CviQI GTAC 2 cut(s) 116, 396
DdeI CTNAG 4 cut(s) 138, 286, 307, 325
DpnI GATC 1 cut(s) 356
DpnII GATC 1 cut(s) 354
Ecl136II GAGCTC 1 cut(s) 142
Eco130I CCWWGG 3 cut(s) 31, 81, 162
Eco24I GRGCYC 1 cut(s) 144
Eco31I GGTCTC 1 cut(s) 310
Eco53kI GAGCTC 1 cut(s) 142
EcoICRI GAGCTC 1 cut(s) 142
EcoRII CCWGG 1 cut(s) 259
EcoT14I CCWWGG 3 cut(s) 31, 81, 162
EcoT22I ATGCAT 1 cut(s) 43
EcoT38I GRGCYC 1 cut(s) 144
ErhI CCWWGG 3 cut(s) 31, 81, 162
FaeI CATG 2 cut(s) 85, 257
FaiI YATR 6 cut(s) 83, 211, 246, 255, 335, 337
FatI CATG 2 cut(s) 81, 253
FauNDI CATATG 1 cut(s) 335
FokI GGATG 1 cut(s) 394
FriOI GRGCYC 1 cut(s) 144
GsaI CCCAGC 1 cut(s) 22
GsuI CTGGAG 1 cut(s) 282
HaeIII GGCC 1 cut(s) 127
Hin1II CATG 2 cut(s) 85, 257
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 3 cut(s) 194, 388, 425
HphI GGTGA 1 cut(s) 397
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 1 cut(s) 289
Hpy8I GTNNAC 1 cut(s) 64
HpyAV CCTTC 1 cut(s) 67
HpyCH4IV ACGT 2 cut(s) 93, 114
HpyCH4V TGCA 4 cut(s) 41, 112, 131, 231
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpyF3I CTNAG 4 cut(s) 138, 286, 307, 325
HpySE526I ACGT 2 cut(s) 93, 114
Hsp92II CATG 2 cut(s) 85, 257
Kzo9I GATC 1 cut(s) 354
LmnI GCTCC 2 cut(s) 147, 263
LpnPI CCDG 9 cut(s) 4, 80, 109, 132, 141, 150, 246, 273, 381
LweI GCATC 1 cut(s) 28
MaeII ACGT 2 cut(s) 93, 114
MaeIII GTNAC 4 cut(s) 89, 105, 166, 385
MalI GATC 1 cut(s) 356
MboI GATC 1 cut(s) 354
MboII GAAGA 3 cut(s) 88, 149, 250
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 4 cut(s) 12, 270, 296, 419
MlyI GAGTC 2 cut(s) 382, 434
MnlI CCTC 3 cut(s) 61, 108, 364
Mph1103I ATGCAT 1 cut(s) 43
MseI TTAA 2 cut(s) 183, 273
MspR9I CCNGG 1 cut(s) 261
MvaI CCWGG 1 cut(s) 261
MwoI GCNNNNNNNGC 1 cut(s) 47
NcoI CCATGG 1 cut(s) 81
NdeI CATATG 1 cut(s) 335
NdeII GATC 1 cut(s) 354
NlaIII CATG 2 cut(s) 85, 257
NmuCI GTSAC 2 cut(s) 105, 385
NsiI ATGCAT 1 cut(s) 43
PfeI GAWTC 1 cut(s) 194
PfoI TCCNGGA 1 cut(s) 259
PleI GAGTC 2 cut(s) 382, 433
PpsI GAGTC 2 cut(s) 382, 433
Ppu21I YACGTR 2 cut(s) 94, 115
Psp124BI GAGCTC 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 259
PspFI CCCAGC 1 cut(s) 18
PspGI CCWGG 1 cut(s) 259
RsaI GTAC 2 cut(s) 117, 397
RsaNI GTAC 2 cut(s) 116, 396
SacI GAGCTC 1 cut(s) 144
SaqAI TTAA 2 cut(s) 183, 273
Sau3AI GATC 1 cut(s) 354
SchI GAGTC 2 cut(s) 382, 434
ScrFI CCNGG 1 cut(s) 261
SduI GDGCHC 1 cut(s) 144
SfaNI GCATC 1 cut(s) 28
Sse9I AATT 4 cut(s) 12, 270, 296, 419
SstI GAGCTC 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 259
StyI CCWWGG 3 cut(s) 31, 81, 162
TaiI ACGT 2 cut(s) 96, 117
TasI AATT 4 cut(s) 12, 270, 296, 419
TatI WGTACW 1 cut(s) 395
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 2 cut(s) 183, 273
Tru9I TTAA 2 cut(s) 183, 273
TscAI CASTG 2 cut(s) 12, 114
TseFI GTSAC 2 cut(s) 105, 385
Tsp45I GTSAC 2 cut(s) 105, 385
TspDTI ATGAA 1 cut(s) 251
TspGWI ACGGA 1 cut(s) 398
TspRI CASTG 2 cut(s) 12, 114
XapI RAATTY 2 cut(s) 296, 419
Zsp2I ATGCAT 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.