Rmu_ssc0000471.1_g000013

Transferase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000471.1
Physical Location & Seq
Forward (+)
34899 .. 35756
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000471.1_g000013.1.cds

Sequence Viewer

Length: 858 bp
atgtcagtgggaattagctgggcaaatgttcttggagatgcattttcagcctcaaccttcatcaaccactgggggaaggccatggcaggtcttgtgccacacaagtctctgcatgaaccagaccgacctgcaaaatctgagcccccactttcagtacttcccaatctaataccagattcagtgaaaaggattgattcggttggtgatttatggttcacacccaacaactgcaagatgaagacacatacttttcatgttcaggtagagaaaattaaccattttctctcaaaccaaaggtccaaggtctcagcttttgaagtactctctgcaatcatatggaaagctctgtccaagataaaggaagacccagaagagacaaggatggtgaaactttgtacaaacaaattccatgaaacagaatttgagtttccaagtaatgggatggtgtggagcacagttaaagcagatttctgggttgcagaagctgaggtctcagaactggtggagctcattttgaacaaaagggaagatgagaatggcatgattgaggagatgatggggaatgatgagagtggggaaaaatcttcagacttcataatatatggggcaaaattgacatttgtgaatttggaagaaatagagatttatgggcttgaattgagggggcaaaagccagtttatgcaaattattccattgaaggggttggtgatgaaggagttgtcttggtgcttcctgggccaaaatgtggtaaggagggagatggtgttaacggtgatcgatctgtgactgtggttatgcctgaaaatcaattggcacagttgaaagttgagctcaaaaggaattggagtattgcttga

Protein Analysis

285

Amino Acids

31.82

Weight (kDa)

5.14

Isoelectric Point (pI)

38.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24510
fragaria_vesca FvH4_5g34840 FvH4_5g34850
malus_domestica MD08G1199200.v1.1 MD08G1199300.v1.1 MD15G1386300.v1.1 MD15G1386800.v1.1
prunus_persica Prupe.1G533000_v2.0.a1
pyrus_communis pycom08g17310 pycom15g34640 pycom15g34680
rosa_chinensis RchiOBHm_Chr1g0364531 RchiOBHm_Chr4g0415781 RchiOBHm_Chr7g0232591 RchiOBHm_Chr7g0235521 RchiOBHm_Chr7g0235551 RchiOBHm_Chr7g0235561 RchiOBHm_Chr7g0235611 RchiOBHm_Chr7g0235721 RchiOBHm_Chr7g0235771
rosa_laevigata RLG00000001141 RLG00000001147 RLG00000001148 RLG00000001151 RLG00000001152 RLG00000001321 RLG00000029743
rosa_multiflora Rmu_co8320053.1_g000001 Rmu_co8402261.1_g000001 Rmu_co8447535.1_g000001 Rmu_sc0001912.1_g000001 Rmu_sc0001912.1_g000003 Rmu_sc0002617.1_g000016 Rmu_sc0002617.1_g000017 Rmu_sc0002892.1_g000022 Rmu_sc0002892.1_g000023 Rmu_sc0002892.1_g000041 Rmu_sc0002892.1_g000042 Rmu_sc0007994.1_g000006 Rmu_sc0010963.1_g000008 Rmu_sc0011151.1_g000005 Rmu_sc0012467.1_g000003 Rmu_ssc0000471.1_g000012 Rmu_ssc0000471.1_g000013
rosa_roxburghii Rroxscaffold_3G00225680 Rroxscaffold_3G00225800 Rroxscaffold_3G00225870 Rroxscaffold_3G00228130 Rroxscaffold_6G00391050
rosa_rugosa Rorug07G0275200 Rorug07G0291500.1 Rorug07G0292000 Rorug07G0292200 Rorug07G0292500 Rorug07G0295900
rosa_samantha Rh7AG430000 Rh7AG446600 Rh7AG446800 Rh7AG447200 Rh7AG447300 Rh7AG447500 Rh7BG403500 Rh7BG418300 Rh7BG418400 Rh7BG418800 Rh7BG419000 Rh7BG419100 Rh7BG419300 Rh7BG419400 Rh7BG419500 Rh7BG419700 Rh7CG448700 Rh7CG466600 Rh7CG467000 Rh7CG467200 Rh7CG467300 Rh7CG467400 Rh7CG467500 Rh7CG468000 Rh7DG419700 Rh7DG435300 Rh7DG435400 Rh7DG435500 Rh7DG435600 Rh7DG436000 Rh7DG436500
rosa_wichuraiana Rw0G011890 Rw7G035510 Rw7G037080 Rw7G037090 Rw7G037110 Rw7G037180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 77, 136
AccB7I CCANNNNNTGG 2 cut(s) 437, 746
AcsI RAATTY 3 cut(s) 404, 419, 625
AcuI CTGAAG 1 cut(s) 570
AfaI GTAC 3 cut(s) 156, 321, 397
AfiI CCNNNNNNNGG 3 cut(s) 437, 699, 746
AgsI TTSAA 5 cut(s) 317, 517, 656, 698, 823
AjnI CCWGG 1 cut(s) 733
AluBI AGCT 6 cut(s) 18, 311, 344, 485, 508, 832
AluI AGCT 6 cut(s) 18, 311, 344, 485, 508, 832
Alw21I GWGCWC 3 cut(s) 455, 510, 834
Alw26I GTCTC 4 cut(s) 111, 310, 368, 496
AlwNI CAGNNNCTG 1 cut(s) 485
AoxI GGCC 2 cut(s) 78, 737
ApoI RAATTY 3 cut(s) 404, 419, 625
ArsI GACNNNNNNTTYG 2 cut(s) 281, 313
AspS9I GGNCC 2 cut(s) 297, 737
AsuHPI GGTGA 4 cut(s) 215, 397, 719, 785
AvaII GGWCC 1 cut(s) 297
BanII GRGCYC 3 cut(s) 144, 510, 834
BbsI GAAGAC 2 cut(s) 245, 369
Bbv12I GWGCWC 3 cut(s) 455, 510, 834
BbvCI CCTCAGC 1 cut(s) 486
BccI CCATC 4 cut(s) 376, 436, 550, 755
BciT130I CCWGG 1 cut(s) 735
BcoDI GTCTC 4 cut(s) 111, 310, 368, 496
BfuAI ACCTGC 2 cut(s) 77, 136
BmcAI AGTACT 2 cut(s) 156, 321
Bme1390I CCNGG 1 cut(s) 735
Bme18I GGWCC 1 cut(s) 297
BmgT120I GGNCC 2 cut(s) 297, 737
BmrFI CCNGG 1 cut(s) 735
BmrI ACTGGG 1 cut(s) 79
BmsI GCATC 1 cut(s) 28
BmuI ACTGGG 1 cut(s) 79
BpiI GAAGAC 2 cut(s) 245, 369
Bpu10I CCTNAGC 1 cut(s) 486
Bsa29I ATCGAT 1 cut(s) 778
BsaI GGTCTC 2 cut(s) 310, 496
BsaJI CCNNGG 3 cut(s) 81, 300, 734
BsaXI ACNNNNNCTCC 2 cut(s) 750, 780
Bsc4I CCNNNNNNNGG 3 cut(s) 437, 699, 746
Bse1I ACTGG 3 cut(s) 74, 504, 674
BseBI CCWGG 1 cut(s) 735
BseCI ATCGAT 1 cut(s) 778
BseDI CCNNGG 3 cut(s) 81, 300, 734
BseGI GGATG 2 cut(s) 387, 447
BseLI CCNNNNNNNGG 3 cut(s) 437, 699, 746
BseMII CTCAG 4 cut(s) 129, 321, 477, 507
BseNI ACTGG 3 cut(s) 74, 504, 674
BseRI GAGGAG 1 cut(s) 563
BseYI CCCAGC 1 cut(s) 18
BshFI GGCC 2 cut(s) 80, 739
BshVI ATCGAT 1 cut(s) 778
BsiHKAI GWGCWC 3 cut(s) 455, 510, 834
BslI CCNNNNNNNGG 3 cut(s) 437, 699, 746
BsmAI GTCTC 4 cut(s) 111, 310, 368, 496
BsnI GGCC 2 cut(s) 80, 739
Bso31I GGTCTC 2 cut(s) 310, 496
Bsp1286I GDGCHC 4 cut(s) 144, 455, 510, 834
Bsp1407I TGTACA 1 cut(s) 395
Bsp143I GATC 2 cut(s) 775, 779
Bsp19I CCATGG 1 cut(s) 81
BspANI GGCC 2 cut(s) 80, 739
BspCNI CTCAG 4 cut(s) 130, 320, 478, 506
BspDI ATCGAT 1 cut(s) 778
BspMI ACCTGC 2 cut(s) 77, 136
BspTNI GGTCTC 2 cut(s) 310, 496
BsrGI TGTACA 1 cut(s) 395
BsrI ACTGG 3 cut(s) 74, 504, 674
BssECI CCNNGG 3 cut(s) 81, 300, 734
BssMI GATC 2 cut(s) 775, 779
BssT1I CCWWGG 2 cut(s) 81, 300
Bst2UI CCWGG 1 cut(s) 735
Bst4CI ACNGT 4 cut(s) 457, 773, 790, 819
Bst6I CTCTTC 1 cut(s) 366
BstAUI TGTACA 1 cut(s) 395
BstDEI CTNAG 4 cut(s) 138, 307, 486, 493
BstDSI CCRYGG 1 cut(s) 81
BstF5I GGATG 2 cut(s) 387, 447
BstKTI GATC 2 cut(s) 778, 782
BstMAI GTCTC 4 cut(s) 111, 310, 368, 496
BstMBI GATC 2 cut(s) 775, 779
BstMWI GCNNNNNNNGC 2 cut(s) 47, 736
BstNI CCWGG 1 cut(s) 735
BstSCI CCNGG 1 cut(s) 733
BstV2I GAAGAC 2 cut(s) 245, 369
Bsu15I ATCGAT 1 cut(s) 778
BsuRI GGCC 2 cut(s) 80, 739
BsuTUI ATCGAT 1 cut(s) 778
BtgI CCRYGG 1 cut(s) 81
BtsCI GGATG 2 cut(s) 387, 447
BtsIMutI CAGTG 3 cut(s) 12, 67, 186
BveI ACCTGC 2 cut(s) 77, 136
CaiI CAGNNNCTG 1 cut(s) 485
Cfr13I GGNCC 2 cut(s) 297, 737
ClaI ATCGAT 1 cut(s) 778
Csp6I GTAC 3 cut(s) 155, 320, 396
CviAII CATG 5 cut(s) 82, 113, 254, 410, 541
CviQI GTAC 3 cut(s) 155, 320, 396
DdeI CTNAG 4 cut(s) 138, 307, 486, 493
DpnI GATC 2 cut(s) 777, 781
DpnII GATC 2 cut(s) 775, 779
Eam1104I CTCTTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 366
Ecl136II GAGCTC 2 cut(s) 508, 832
Eco130I CCWWGG 2 cut(s) 81, 300
Eco24I GRGCYC 3 cut(s) 144, 510, 834
Eco31I GGTCTC 2 cut(s) 310, 496
Eco47I GGWCC 1 cut(s) 297
Eco53kI GAGCTC 2 cut(s) 508, 832
Eco57I CTGAAG 1 cut(s) 570
EcoICRI GAGCTC 2 cut(s) 508, 832
EcoRII CCWGG 1 cut(s) 733
EcoT14I CCWWGG 2 cut(s) 81, 300
EcoT22I ATGCAT 1 cut(s) 43
EcoT38I GRGCYC 3 cut(s) 144, 510, 834
ErhI CCWWGG 2 cut(s) 81, 300
FaeI CATG 5 cut(s) 85, 116, 257, 413, 544
FatI CATG 5 cut(s) 81, 112, 253, 409, 540
FauNDI CATATG 1 cut(s) 335
FokI GGATG 2 cut(s) 394, 454
FriOI GRGCYC 3 cut(s) 144, 510, 834
GsaI CCCAGC 1 cut(s) 22
HaeIII GGCC 2 cut(s) 80, 739
Hin1II CATG 5 cut(s) 85, 116, 257, 413, 544
HincII GTYRAC 1 cut(s) 769
HindII GTYRAC 1 cut(s) 769
HinfI GANTC 2 cut(s) 176, 194
HpaI GTTAAC 1 cut(s) 769
HphI GGTGA 4 cut(s) 215, 397, 719, 785
Hpy166II GTNNAC 2 cut(s) 216, 769
Hpy188I TCNGA 3 cut(s) 139, 496, 589
Hpy8I GTNNAC 2 cut(s) 216, 769
HpyAV CCTTC 4 cut(s) 67, 70, 692, 707
HpyCH4III ACNGT 4 cut(s) 457, 773, 790, 819
HpyCH4V TGCA 7 cut(s) 41, 112, 131, 231, 329, 479, 683
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 736
HpyF3I CTNAG 4 cut(s) 138, 307, 486, 493
Hsp92II CATG 5 cut(s) 85, 116, 257, 413, 544
KspAI GTTAAC 1 cut(s) 769
Kzo9I GATC 2 cut(s) 775, 779
LmnI GCTCC 2 cut(s) 450, 505
LweI GCATC 1 cut(s) 28
MaeIII GTNAC 1 cut(s) 784
MalI GATC 2 cut(s) 777, 781
MboI GATC 2 cut(s) 775, 779
MboII GAAGA 6 cut(s) 250, 374, 383, 539, 576, 644
MfeI CAATTG 1 cut(s) 809
MhlI GDGCHC 4 cut(s) 144, 455, 510, 834
MnlI CCTC 5 cut(s) 61, 481, 541, 654, 748
Mph1103I ATGCAT 1 cut(s) 43
MseI TTAA 3 cut(s) 273, 459, 768
MspR9I CCNGG 1 cut(s) 735
MunI CAATTG 1 cut(s) 809
MvaI CCWGG 1 cut(s) 735
MwoI GCNNNNNNNGC 2 cut(s) 47, 736
NcoI CCATGG 1 cut(s) 81
NdeI CATATG 1 cut(s) 335
NdeII GATC 2 cut(s) 775, 779
NlaIII CATG 5 cut(s) 85, 116, 257, 413, 544
NmuCI GTSAC 1 cut(s) 784
NsiI ATGCAT 1 cut(s) 43
PfeI GAWTC 2 cut(s) 176, 194
PflMI CCANNNNNTGG 2 cut(s) 437, 746
Psp124BI GAGCTC 2 cut(s) 510, 834
Psp6I CCWGG 1 cut(s) 733
PspFI CCCAGC 1 cut(s) 18
PspGI CCWGG 1 cut(s) 733
PspPI GGNCC 2 cut(s) 297, 737
PstNI CAGNNNCTG 1 cut(s) 485
RsaI GTAC 3 cut(s) 156, 321, 397
RsaNI GTAC 3 cut(s) 155, 320, 396
SacI GAGCTC 2 cut(s) 510, 834
SaqAI TTAA 3 cut(s) 273, 459, 768
Sau3AI GATC 2 cut(s) 775, 779
Sau96I GGNCC 2 cut(s) 297, 737
ScaI AGTACT 2 cut(s) 156, 321
ScrFI CCNGG 1 cut(s) 735
SduI GDGCHC 4 cut(s) 144, 455, 510, 834
SfaNI GCATC 1 cut(s) 28
SinI GGWCC 1 cut(s) 297
SstI GAGCTC 2 cut(s) 510, 834
StyD4I CCNGG 1 cut(s) 733
StyI CCWWGG 2 cut(s) 81, 300
TaaI ACNGT 4 cut(s) 457, 773, 790, 819
TaqI TCGA 1 cut(s) 778
TaqII GACCGA 1 cut(s) 138
TatI WGTACW 3 cut(s) 154, 319, 395
TfiI GAWTC 2 cut(s) 176, 194
Tru1I TTAA 3 cut(s) 273, 459, 768
Tru9I TTAA 3 cut(s) 273, 459, 768
TscAI CASTG 3 cut(s) 12, 74, 186
TseFI GTSAC 1 cut(s) 784
Tsp45I GTSAC 1 cut(s) 784
TspDTI ATGAA 7 cut(s) 49, 129, 242, 251, 426, 583, 726
TspRI CASTG 3 cut(s) 12, 74, 186
Van91I CCANNNNNTGG 2 cut(s) 437, 746
VpaK11BI GGWCC 1 cut(s) 297
XapI RAATTY 3 cut(s) 404, 419, 625
ZrmI AGTACT 2 cut(s) 156, 321
Zsp2I ATGCAT 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.