Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002892.1

Orthogroup ID

OG0000453

Physical Location & Seq

Genomic Coordinates Reverse (-)

175881 .. 176405

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002892.1_g000042.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atggtggcagcatcaaccaagaacatcgaccgcctcaagtccagcatgagactgtcgtccgtcgcctcaggaacggtgactggtcggaaggtccatgagctgaccaacgtggacttggctatgaagctccattacatcaaaggggtctactttttcaacagtgatgcagtcgaggggcttacggtatttgacttgaagaagcccatggtcatccatttgctcccactctactacgttgcctccgggagaatccgaagatccgaaacgggccggcctttcatcacgtgtaacgatgccggtgtgagaattgtggaggcacgttgtgacgaaacggtcgatgaatggttggccatggctgtggaggatgattctacttttgatggtcttgcttataatcaagcacttggtgaaactgatcttgatttctctcctttggtctttatacaggttaaatcactagctcactactcgtctattatggaaatggcttctacgttagctagtctttttcaagtttcaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009555 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016053 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048229 GO:0048856 GO:0071704 GO:0072330 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

174

Amino Acids

19.26

Weight (kDa)

5.53

Isoelectric Point (pI)

28.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24510
fragaria_vesca	FvH4_5g34840 FvH4_5g34850
malus_domestica	MD08G1199200.v1.1 MD08G1199300.v1.1 MD15G1386300.v1.1 MD15G1386800.v1.1
prunus_persica	Prupe.1G533000_v2.0.a1
pyrus_communis	pycom08g17310 pycom15g34640 pycom15g34680
rosa_chinensis	RchiOBHm_Chr1g0364531 RchiOBHm_Chr4g0415781 RchiOBHm_Chr7g0232591 RchiOBHm_Chr7g0235521 RchiOBHm_Chr7g0235551 RchiOBHm_Chr7g0235561 RchiOBHm_Chr7g0235611 RchiOBHm_Chr7g0235721 RchiOBHm_Chr7g0235771
rosa_laevigata	RLG00000001141 RLG00000001147 RLG00000001148 RLG00000001151 RLG00000001152 RLG00000001321 RLG00000029743
rosa_multiflora	Rmu_co8320053.1_g000001 Rmu_co8402261.1_g000001 Rmu_co8447535.1_g000001 Rmu_sc0001912.1_g000001 Rmu_sc0001912.1_g000003 Rmu_sc0002617.1_g000016 Rmu_sc0002617.1_g000017 Rmu_sc0002892.1_g000022 Rmu_sc0002892.1_g000023 Rmu_sc0002892.1_g000041 Rmu_sc0002892.1_g000042 Rmu_sc0007994.1_g000006 Rmu_sc0010963.1_g000008 Rmu_sc0011151.1_g000005 Rmu_sc0012467.1_g000003 Rmu_ssc0000471.1_g000012 Rmu_ssc0000471.1_g000013
rosa_roxburghii	Rroxscaffold_3G00225680 Rroxscaffold_3G00225800 Rroxscaffold_3G00225870 Rroxscaffold_3G00228130 Rroxscaffold_6G00391050
rosa_rugosa	Rorug07G0275200 Rorug07G0291500.1 Rorug07G0292000 Rorug07G0292200 Rorug07G0292500 Rorug07G0295900
rosa_samantha	Rh7AG430000 Rh7AG446600 Rh7AG446800 Rh7AG447200 Rh7AG447300 Rh7AG447500 Rh7BG403500 Rh7BG418300 Rh7BG418400 Rh7BG418800 Rh7BG419000 Rh7BG419100 Rh7BG419300 Rh7BG419400 Rh7BG419500 Rh7BG419700 Rh7CG448700 Rh7CG466600 Rh7CG467000 Rh7CG467200 Rh7CG467300 Rh7CG467400 Rh7CG467500 Rh7CG468000 Rh7DG419700 Rh7DG435300 Rh7DG435400 Rh7DG435500 Rh7DG435600 Rh7DG436000 Rh7DG436500
rosa_wichuraiana	Rw0G011890 Rw7G035510 Rw7G037080 Rw7G037090 Rw7G037110 Rw7G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	393
AasI	GACNNNNNNGTC	1 cut(s)	332
AccI	GTMKAC	1 cut(s)	147
AciI	CCGC	1 cut(s)	31
AclWI	GGATC	1 cut(s)	252
AcoI	YGGCCR	1 cut(s)	348
AcvI	CACGTG	1 cut(s)	285
AdeI	CACNNNGTG	2 cut(s)	323, 407
AflIII	ACRYGT	1 cut(s)	284
AgsI	TTSAA	4 cut(s)	157, 196, 512, 519
AluBI	AGCT	4 cut(s)	100, 127, 461, 500
AluI	AGCT	4 cut(s)	100, 127, 461, 500
Alw26I	GTCTC	1 cut(s)	43
AlwI	GGATC	1 cut(s)	252
AoxI	GGCC	3 cut(s)	268, 272, 348
ApeKI	GCWGC	1 cut(s)	8
AspS9I	GGNCC	2 cut(s)	91, 268
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	2 cut(s)	88, 419
AvaII	GGWCC	1 cut(s)	91
AxyI	CCTNAGG	1 cut(s)	67
BalI	TGGCCA	1 cut(s)	350
BarI	GAAGNNNNNNTAC	2 cut(s)	116, 148
BbrPI	CACGTG	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	20
BccI	CCATC	1 cut(s)	374
BcnI	CCSGG	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	43
BfaI	CTAG	2 cut(s)	458, 501
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
Bme1390I	CCNGG	1 cut(s)	244
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	2 cut(s)	91, 268
BmrFI	CCNGG	1 cut(s)	244
BmsI	GCATC	3 cut(s)	20, 154, 283
BoxI	GACNNNNGTC	1 cut(s)	55
BpuEI	CTTGAG	1 cut(s)	20
BpuMI	CCSGG	1 cut(s)	244
BsaAI	YACGTR	1 cut(s)	285
BsaJI	CCNNGG	2 cut(s)	204, 351
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bse118I	RCCGGY	2 cut(s)	270, 296
Bse1I	ACTGG	1 cut(s)	85
Bse21I	CCTNAGG	1 cut(s)	67
BseDI	CCNNGG	2 cut(s)	204, 351
BseGI	GGATG	2 cut(s)	210, 370
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	85
BseXI	GCAGC	1 cut(s)	20
Bsh1285I	CGRYCG	2 cut(s)	31, 336
BshFI	GGCC	3 cut(s)	270, 274, 350
BsiEI	CGRYCG	2 cut(s)	31, 336
BsiSI	CCGG	3 cut(s)	243, 271, 297
BsmAI	GTCTC	1 cut(s)	43
BsnI	GGCC	3 cut(s)	270, 274, 350
Bsp143I	GATC	2 cut(s)	257, 415
Bsp19I	CCATGG	2 cut(s)	204, 351
BspACI	CCGC	1 cut(s)	31
BspANI	GGCC	3 cut(s)	270, 274, 350
BspCNI	CTCAG	1 cut(s)	80
BspPI	GGATC	1 cut(s)	252
BsrFI	RCCGGY	2 cut(s)	270, 296
BsrI	ACTGG	1 cut(s)	85
BssAI	RCCGGY	2 cut(s)	270, 296
BssECI	CCNNGG	2 cut(s)	204, 351
BssMI	GATC	2 cut(s)	257, 415
BssT1I	CCWWGG	2 cut(s)	204, 351
Bst4CI	ACNGT	5 cut(s)	54, 76, 161, 184, 334
BstBAI	YACGTR	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	272
BstDEI	CTNAG	1 cut(s)	67
BstDSI	CCRYGG	2 cut(s)	204, 351
BstF5I	GGATG	2 cut(s)	210, 370
BstKTI	GATC	2 cut(s)	260, 418
BstMAI	GTCTC	1 cut(s)	43
BstMBI	GATC	2 cut(s)	257, 415
BstMCI	CGRYCG	2 cut(s)	31, 336
BstPAI	GACNNNNGTC	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	242
BstV1I	GCAGC	1 cut(s)	20
BstX2I	RGATCY	1 cut(s)	257
BstXI	CCANNNNNNTGG	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	257
Bsu36I	CCTNAGG	1 cut(s)	67
BsuRI	GGCC	3 cut(s)	270, 274, 350
BtgI	CCRYGG	2 cut(s)	204, 351
BtsCI	GGATG	2 cut(s)	210, 370
BtsIMutI	CAGTG	1 cut(s)	166
Cac8I	GCNNGC	1 cut(s)	272
Cfr10I	RCCGGY	2 cut(s)	270, 296
Cfr13I	GGNCC	2 cut(s)	91, 268
CviAII	CATG	4 cut(s)	46, 95, 205, 352
DdeI	CTNAG	1 cut(s)	67
DpnI	GATC	2 cut(s)	259, 417
DpnII	GATC	2 cut(s)	257, 415
DraIII	CACNNNGTG	2 cut(s)	323, 407
DrdI	GACNNNNNNGTC	1 cut(s)	332
DseDI	GACNNNNNNGTC	1 cut(s)	332
EaeI	YGGCCR	1 cut(s)	348
Eco130I	CCWWGG	2 cut(s)	204, 351
Eco47I	GGWCC	1 cut(s)	91
Eco72I	CACGTG	1 cut(s)	285
Eco81I	CCTNAGG	1 cut(s)	67
EcoT14I	CCWWGG	2 cut(s)	204, 351
ErhI	CCWWGG	2 cut(s)	204, 351
FaeI	CATG	4 cut(s)	49, 98, 208, 355
FaiI	YATR	8 cut(s)	47, 96, 122, 206, 353, 393, 443, 479
FatI	CATG	4 cut(s)	45, 94, 204, 351
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	1 cut(s)	9
FokI	GGATG	2 cut(s)	197, 377
FseI	GGCCGGCC	1 cut(s)	274
Fsp4HI	GCNGC	1 cut(s)	9
FspBI	CTAG	2 cut(s)	458, 501
GluI	GCNGC	1 cut(s)	9
HaeIII	GGCC	3 cut(s)	270, 274, 350
HapII	CCGG	3 cut(s)	243, 271, 297
Hin1II	CATG	4 cut(s)	49, 98, 208, 355
HinfI	GANTC	2 cut(s)	249, 368
HpaII	CCGG	3 cut(s)	243, 271, 297
HphI	GGTGA	2 cut(s)	88, 419
Hpy166II	GTNNAC	2 cut(s)	112, 148
Hpy188I	TCNGA	3 cut(s)	87, 254, 262
Hpy188III	TCNNGA	2 cut(s)	69, 419
Hpy8I	GTNNAC	2 cut(s)	112, 148
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	5 cut(s)	54, 76, 161, 184, 334
HpyCH4IV	ACGT	5 cut(s)	108, 234, 284, 319, 494
HpyCH4V	TGCA	1 cut(s)	167
HpyF3I	CTNAG	1 cut(s)	67
HpySE526I	ACGT	5 cut(s)	108, 234, 284, 319, 494
Hsp92II	CATG	4 cut(s)	49, 98, 208, 355
KroI	GCCGGC	1 cut(s)	270
KroNI	GCCGGC	1 cut(s)	272
Kzo9I	GATC	2 cut(s)	257, 415
LmnI	GCTCC	2 cut(s)	132, 225
LpnPI	CCDG	7 cut(s)	54, 55, 66, 256, 284, 310, 431
Lsp1109I	GCAGC	1 cut(s)	20
LweI	GCATC	3 cut(s)	20, 154, 283
MaeI	CTAG	2 cut(s)	458, 501
MaeII	ACGT	5 cut(s)	108, 234, 284, 319, 494
MaeIII	GTNAC	3 cut(s)	76, 287, 323
MalI	GATC	2 cut(s)	259, 417
MboI	GATC	2 cut(s)	257, 415
MboII	GAAGA	2 cut(s)	208, 267
MflI	RGATCY	1 cut(s)	257
MlsI	TGGCCA	1 cut(s)	350
MluCI	AATT	2 cut(s)	306, 520
MluNI	TGGCCA	1 cut(s)	350
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	6 cut(s)	44, 76, 166, 250, 307, 355
Mox20I	TGGCCA	1 cut(s)	350
MroNI	GCCGGC	1 cut(s)	270
MscI	TGGCCA	1 cut(s)	350
MseI	TTAA	2 cut(s)	450, 523
MslI	CAYNNNNRTG	1 cut(s)	356
Msp20I	TGGCCA	1 cut(s)	350
MspI	CCGG	3 cut(s)	243, 271, 297
MspR9I	CCNGG	1 cut(s)	244
NaeI	GCCGGC	1 cut(s)	272
NciI	CCSGG	1 cut(s)	244
NcoI	CCATGG	2 cut(s)	204, 351
NdeII	GATC	2 cut(s)	257, 415
NgoMIV	GCCGGC	1 cut(s)	270
NlaIII	CATG	4 cut(s)	49, 98, 208, 355
NmuCI	GTSAC	2 cut(s)	76, 323
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PdiI	GCCGGC	1 cut(s)	272
PfeI	GAWTC	2 cut(s)	249, 368
PfoI	TCCNGGA	1 cut(s)	242
PkrI	GCNGC	1 cut(s)	10
PmaCI	CACGTG	1 cut(s)	285
PmlI	CACGTG	1 cut(s)	285
Ppu21I	YACGTR	1 cut(s)	285
PshAI	GACNNNNGTC	1 cut(s)	55
PsiI	TTATAA	1 cut(s)	393
PspCI	CACGTG	1 cut(s)	285
PspPI	GGNCC	2 cut(s)	91, 268
PsuI	RGATCY	1 cut(s)	257
RigI	GGCCGGCC	1 cut(s)	274
RseI	CAYNNNNRTG	1 cut(s)	356
SaqAI	TTAA	2 cut(s)	450, 523
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	2 cut(s)	257, 415
Sau96I	GGNCC	2 cut(s)	91, 268
ScrFI	CCNGG	1 cut(s)	244
SfaNI	GCATC	3 cut(s)	20, 154, 283
SinI	GGWCC	1 cut(s)	91
SmiMI	CAYNNNNRTG	1 cut(s)	356
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	2 cut(s)	306, 520
SsiI	CCGC	1 cut(s)	31
SspMI	CTAG	2 cut(s)	458, 501
StyD4I	CCNGG	1 cut(s)	242
StyI	CCWWGG	2 cut(s)	204, 351
TaaI	ACNGT	5 cut(s)	54, 76, 161, 184, 334
TaiI	ACGT	5 cut(s)	111, 237, 287, 322, 497
TaqI	TCGA	3 cut(s)	27, 171, 336
TasI	AATT	2 cut(s)	306, 520
TfiI	GAWTC	2 cut(s)	249, 368
Tru1I	TTAA	2 cut(s)	450, 523
Tru9I	TTAA	2 cut(s)	450, 523
TscAI	CASTG	1 cut(s)	166
TseFI	GTSAC	2 cut(s)	76, 323
TseI	GCWGC	1 cut(s)	8
Tsp45I	GTSAC	2 cut(s)	76, 323
TspDTI	ATGAA	3 cut(s)	137, 268, 354
TspGWI	ACGGA	1 cut(s)	49
TspRI	CASTG	1 cut(s)	166
VpaK11BI	GGWCC	1 cut(s)	91
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112
XmiI	GTMKAC	1 cut(s)	147
XspI	CTAG	2 cut(s)	458, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.