Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8320053.1

Orthogroup ID

OG0000453

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 281

Gene Structure 281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8320053.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 281 bp

aaaaatcttcagacttcatagcatatggggcaaaattgacatttgtgaatttggaagaaatagagatttatgggcttgaattgaaagggcaaaagccagtttatgcaaactattccattaatggggttggtgatgaaggagttgtcttggtgcttccagggccaaaatgtggtaaggagggagatggtgttaatggtgatcgatttgtgactgtggttatgcctgaaaatcaactagcacagctgaaagttgagctaaaaaagaattggagtattgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009555 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016053 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048229 GO:0048856 GO:0071704 GO:0072330 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

92

Amino Acids

10.0

Weight (kDa)

5.05

Isoelectric Point (pI)

19.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24510
fragaria_vesca	FvH4_5g34840 FvH4_5g34850
malus_domestica	MD08G1199200.v1.1 MD08G1199300.v1.1 MD15G1386300.v1.1 MD15G1386800.v1.1
prunus_persica	Prupe.1G533000_v2.0.a1
pyrus_communis	pycom08g17310 pycom15g34640 pycom15g34680
rosa_chinensis	RchiOBHm_Chr1g0364531 RchiOBHm_Chr4g0415781 RchiOBHm_Chr7g0232591 RchiOBHm_Chr7g0235521 RchiOBHm_Chr7g0235551 RchiOBHm_Chr7g0235561 RchiOBHm_Chr7g0235611 RchiOBHm_Chr7g0235721 RchiOBHm_Chr7g0235771
rosa_laevigata	RLG00000001141 RLG00000001147 RLG00000001148 RLG00000001151 RLG00000001152 RLG00000001321 RLG00000029743
rosa_multiflora	Rmu_co8320053.1_g000001 Rmu_co8402261.1_g000001 Rmu_co8447535.1_g000001 Rmu_sc0001912.1_g000001 Rmu_sc0001912.1_g000003 Rmu_sc0002617.1_g000016 Rmu_sc0002617.1_g000017 Rmu_sc0002892.1_g000022 Rmu_sc0002892.1_g000023 Rmu_sc0002892.1_g000041 Rmu_sc0002892.1_g000042 Rmu_sc0007994.1_g000006 Rmu_sc0010963.1_g000008 Rmu_sc0011151.1_g000005 Rmu_sc0012467.1_g000003 Rmu_ssc0000471.1_g000012 Rmu_ssc0000471.1_g000013
rosa_roxburghii	Rroxscaffold_3G00225680 Rroxscaffold_3G00225800 Rroxscaffold_3G00225870 Rroxscaffold_3G00228130 Rroxscaffold_6G00391050
rosa_rugosa	Rorug07G0275200 Rorug07G0291500.1 Rorug07G0292000 Rorug07G0292200 Rorug07G0292500 Rorug07G0295900
rosa_samantha	Rh7AG430000 Rh7AG446600 Rh7AG446800 Rh7AG447200 Rh7AG447300 Rh7AG447500 Rh7BG403500 Rh7BG418300 Rh7BG418400 Rh7BG418800 Rh7BG419000 Rh7BG419100 Rh7BG419300 Rh7BG419400 Rh7BG419500 Rh7BG419700 Rh7CG448700 Rh7CG466600 Rh7CG467000 Rh7CG467200 Rh7CG467300 Rh7CG467400 Rh7CG467500 Rh7CG468000 Rh7DG419700 Rh7DG435300 Rh7DG435400 Rh7DG435500 Rh7DG435600 Rh7DG436000 Rh7DG436500
rosa_wichuraiana	Rw0G011890 Rw7G035510 Rw7G037080 Rw7G037090 Rw7G037110 Rw7G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	169
AcsI	RAATTY	1 cut(s)	48
AfiI	CCNNNNNNNGG	2 cut(s)	122, 169
AgsI	TTSAA	2 cut(s)	79, 84
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	2 cut(s)	243, 255
AluI	AGCT	2 cut(s)	243, 255
AoxI	GGCC	1 cut(s)	160
ApoI	RAATTY	1 cut(s)	48
AseI	ATTAAT	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	160
AsuHPI	GGTGA	2 cut(s)	142, 208
BccI	CCATC	1 cut(s)	178
BciT130I	CCWGG	1 cut(s)	158
BfaI	CTAG	1 cut(s)	235
Bme1390I	CCNGG	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	160
BmrFI	CCNGG	1 cut(s)	158
Bsa29I	ATCGAT	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	157
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 169
Bse1I	ACTGG	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	158
BseCI	ATCGAT	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	157
BseLI	CCNNNNNNNGG	2 cut(s)	122, 169
BseNI	ACTGG	1 cut(s)	97
BshFI	GGCC	1 cut(s)	162
BshVI	ATCGAT	1 cut(s)	201
BslI	CCNNNNNNNGG	2 cut(s)	122, 169
BsnI	GGCC	1 cut(s)	162
Bsp143I	GATC	1 cut(s)	198
BspANI	GGCC	1 cut(s)	162
BspDI	ATCGAT	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	1 cut(s)	157
BssMI	GATC	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	1 cut(s)	213
BstKTI	GATC	1 cut(s)	201
BstMBI	GATC	1 cut(s)	198
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 159
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	156
Bsu15I	ATCGAT	1 cut(s)	201
BsuRI	GGCC	1 cut(s)	162
BsuTUI	ATCGAT	1 cut(s)	201
Cfr13I	GGNCC	1 cut(s)	160
ClaI	ATCGAT	1 cut(s)	201
CviJI	RGCY	5 cut(s)	75, 96, 162, 243, 255
CviKI_1	RGCY	5 cut(s)	75, 96, 162, 243, 255
DpnI	GATC	1 cut(s)	200
DpnII	GATC	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	156
FaiI	YATR	6 cut(s)	19, 24, 26, 71, 104, 220
FauNDI	CATATG	1 cut(s)	24
FspBI	CTAG	1 cut(s)	235
HaeIII	GGCC	1 cut(s)	162
HphI	GGTGA	2 cut(s)	142, 208
Hpy188I	TCNGA	1 cut(s)	12
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	1 cut(s)	213
HpyCH4V	TGCA	1 cut(s)	106
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 159
Kzo9I	GATC	1 cut(s)	198
LpnPI	CCDG	4 cut(s)	110, 143, 170, 236
MaeI	CTAG	1 cut(s)	235
MaeIII	GTNAC	1 cut(s)	207
MalI	GATC	1 cut(s)	200
MboI	GATC	1 cut(s)	198
MboII	GAAGA	1 cut(s)	67
MluCI	AATT	4 cut(s)	34, 48, 79, 264
MnlI	CCTC	1 cut(s)	171
MseI	TTAA	2 cut(s)	119, 191
MspA1I	CMGCKG	1 cut(s)	243
MspR9I	CCNGG	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	2 cut(s)	28, 159
NdeI	CATATG	1 cut(s)	24
NdeII	GATC	1 cut(s)	198
NmuCI	GTSAC	1 cut(s)	207
PflMI	CCANNNNNTGG	1 cut(s)	169
PshBI	ATTAAT	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PspPI	GGNCC	1 cut(s)	160
PvuII	CAGCTG	1 cut(s)	243
SaqAI	TTAA	2 cut(s)	119, 191
Sau3AI	GATC	1 cut(s)	198
Sau96I	GGNCC	1 cut(s)	160
ScrFI	CCNGG	1 cut(s)	158
SetI	ASST	2 cut(s)	245, 257
SgeI	CNNG	7 cut(s)	88, 109, 159, 169, 170, 235, 247
Sse9I	AATT	4 cut(s)	34, 48, 79, 264
SspMI	CTAG	1 cut(s)	235
StyD4I	CCNGG	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	213
TaqI	TCGA	1 cut(s)	201
TasI	AATT	4 cut(s)	34, 48, 79, 264
Tru1I	TTAA	2 cut(s)	119, 191
Tru9I	TTAA	2 cut(s)	119, 191
TseFI	GTSAC	1 cut(s)	207
Tsp45I	GTSAC	1 cut(s)	207
TspDTI	ATGAA	2 cut(s)	6, 149
Van91I	CCANNNNNTGG	1 cut(s)	169
VspI	ATTAAT	1 cut(s)	119
XapI	RAATTY	1 cut(s)	48
XspI	CTAG	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.