Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000453

Physical Location & Seq

Genomic Coordinates Reverse (-)

62428892 .. 62429749

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG467400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGTCAGTGGGAATTAGCTGGGCAAATGTTCTTGGAGATGCATTTTCAGCCTCAACCTTCATCAACATGTGGGGGAAGACCATGGCAGGTTACGTGCCACACAAGTCTTTGCACGTACCAGACTGGCTTGCAAAATCTGAGCTCCCACTTTCAGTACTTCCTAAGGTAACACCAAACGCTCTTAAAAGGGTTGATTCAGTTGGCGATTTATGGCTCACACCCAACAACTGCAAGATGAAGACACATACTTTTCATGTTCCTGGAGCGAAAATTAACCATTTTCTCTCAGACCAAAAATTCAAGGTCTCAGTTTTTGAAGTACTCTGTGCAATCATATGGAAAACCTTATCAAAGATCAAGGAAAACCCAAAGGAGACGAGGATGGTGACTCTTTGTACAAACAAATTCCGTGAAAGAGAATTTGAGTCTCCAAGTAATGGGATGGTGTGGAGCACAATTAAAGCAGATTTCTGGGTGGCAGAAGCTGAGGTTTCAGAATTGGTAGAGCTCATTTTGAATAAAAAGGAAGATGAAAATGGCATGATTGAAGAGATGATGGGGAATACTGAGACTGGGGAAAAATCTTCAGACTTTATAGCATATGGGGCAAAATTGACATTTGTGAATTTGGAACAGATAGAGATTTATGGTCTTGAATTGAAGGGGCAACAGCCAGTTTACGCAAATTATTCCATTAATGGGGTTGGTGATGAAGGAGTTGTCTTGGTGCTTCCAGGGCCAAAATGTGGTAAGGAGGGAGATGGTGTTAATGGTGATCGATCTGTGACTGTGGTTATGCCTGAAAATCAACTGGCACAGCTGAAAGTTGAGCTCAAAAGCAATTGGAGCATTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009555 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016053 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048229 GO:0048856 GO:0071704 GO:0072330 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

285

Amino Acids

31.66

Weight (kDa)

5.66

Isoelectric Point (pI)

27.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	1 - 277	1.5e-06	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24510
fragaria_vesca	FvH4_5g34840 FvH4_5g34850
malus_domestica	MD08G1199200.v1.1 MD08G1199300.v1.1 MD15G1386300.v1.1 MD15G1386800.v1.1
prunus_persica	Prupe.1G533000_v2.0.a1
pyrus_communis	pycom08g17310 pycom15g34640 pycom15g34680
rosa_chinensis	RchiOBHm_Chr1g0364531 RchiOBHm_Chr4g0415781 RchiOBHm_Chr7g0232591 RchiOBHm_Chr7g0235521 RchiOBHm_Chr7g0235551 RchiOBHm_Chr7g0235561 RchiOBHm_Chr7g0235611 RchiOBHm_Chr7g0235721 RchiOBHm_Chr7g0235771
rosa_laevigata	RLG00000001141 RLG00000001147 RLG00000001148 RLG00000001151 RLG00000001152 RLG00000001321 RLG00000029743
rosa_multiflora	Rmu_co8320053.1_g000001 Rmu_co8402261.1_g000001 Rmu_co8447535.1_g000001 Rmu_sc0001912.1_g000001 Rmu_sc0001912.1_g000003 Rmu_sc0002617.1_g000016 Rmu_sc0002617.1_g000017 Rmu_sc0002892.1_g000022 Rmu_sc0002892.1_g000023 Rmu_sc0002892.1_g000041 Rmu_sc0002892.1_g000042 Rmu_sc0007994.1_g000006 Rmu_sc0010963.1_g000008 Rmu_sc0011151.1_g000005 Rmu_sc0012467.1_g000003 Rmu_ssc0000471.1_g000012 Rmu_ssc0000471.1_g000013
rosa_roxburghii	Rroxscaffold_3G00225680 Rroxscaffold_3G00225800 Rroxscaffold_3G00225870 Rroxscaffold_3G00228130 Rroxscaffold_6G00391050
rosa_rugosa	Rorug07G0275200 Rorug07G0291500.1 Rorug07G0292000 Rorug07G0292200 Rorug07G0292500 Rorug07G0295900
rosa_samantha	Rh7AG430000 Rh7AG446600 Rh7AG446800 Rh7AG447200 Rh7AG447300 Rh7AG447500 Rh7BG403500 Rh7BG418300 Rh7BG418400 Rh7BG418800 Rh7BG419000 Rh7BG419100 Rh7BG419300 Rh7BG419400 Rh7BG419500 Rh7BG419700 Rh7CG448700 Rh7CG466600 Rh7CG467000 Rh7CG467200 Rh7CG467300 Rh7CG467400 Rh7CG467500 Rh7CG468000 Rh7DG419700 Rh7DG435300 Rh7DG435400 Rh7DG435500 Rh7DG435600 Rh7DG436000 Rh7DG436500
rosa_wichuraiana	Rw0G011890 Rw7G035510 Rw7G037080 Rw7G037090 Rw7G037110 Rw7G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	77
AccB7I	CCANNNNNTGG	2 cut(s)	437, 746
AcsI	RAATTY	4 cut(s)	296, 404, 419, 625
AcuI	CTGAAG	1 cut(s)	570
AfaI	GTAC	4 cut(s)	117, 156, 321, 397
AfiI	CCNNNNNNNGG	3 cut(s)	437, 699, 746
AflIII	ACRYGT	1 cut(s)	66
AgsI	TTSAA	6 cut(s)	301, 317, 517, 548, 656, 661
AjnI	CCWGG	2 cut(s)	259, 733
AluBI	AGCT	6 cut(s)	18, 142, 485, 508, 820, 832
AluI	AGCT	6 cut(s)	18, 142, 485, 508, 820, 832
Alw21I	GWGCWC	4 cut(s)	144, 455, 510, 834
Alw26I	GTCTC	4 cut(s)	310, 368, 432, 563
AlwNI	CAGNNNCTG	1 cut(s)	485
AoxI	GGCC	1 cut(s)	737
ApoI	RAATTY	4 cut(s)	296, 404, 419, 625
AseI	ATTAAT	1 cut(s)	696
AspS9I	GGNCC	1 cut(s)	737
AsuHPI	GGTGA	3 cut(s)	397, 719, 785
AxyI	CCTNAGG	1 cut(s)	162
BanII	GRGCYC	3 cut(s)	144, 510, 834
BbsI	GAAGAC	2 cut(s)	83, 245
Bbv12I	GWGCWC	4 cut(s)	144, 455, 510, 834
BbvCI	CCTCAGC	1 cut(s)	486
BccI	CCATC	4 cut(s)	376, 436, 550, 755
BciT130I	CCWGG	2 cut(s)	261, 735
BcoDI	GTCTC	4 cut(s)	310, 368, 432, 563
BfuAI	ACCTGC	1 cut(s)	77
BmcAI	AGTACT	2 cut(s)	156, 321
Bme1390I	CCNGG	2 cut(s)	261, 735
BmgT120I	GGNCC	1 cut(s)	737
BmrFI	CCNGG	2 cut(s)	261, 735
BmrI	ACTGGG	1 cut(s)	582
BmsI	GCATC	1 cut(s)	28
BmuI	ACTGGG	1 cut(s)	582
BpiI	GAAGAC	2 cut(s)	83, 245
BpmI	CTGGAG	1 cut(s)	282
Bpu10I	CCTNAGC	1 cut(s)	486
Bsa29I	ATCGAT	1 cut(s)	778
BsaAI	YACGTR	2 cut(s)	94, 115
BsaI	GGTCTC	1 cut(s)	310
BsaJI	CCNNGG	2 cut(s)	81, 734
BsaXI	ACNNNNNCTCC	2 cut(s)	750, 780
Bsc4I	CCNNNNNNNGG	3 cut(s)	437, 699, 746
Bse1I	ACTGG	4 cut(s)	128, 577, 674, 816
Bse21I	CCTNAGG	1 cut(s)	162
Bse3DI	GCAATG	1 cut(s)	849
BseBI	CCWGG	2 cut(s)	261, 735
BseCI	ATCGAT	1 cut(s)	778
BseDI	CCNNGG	2 cut(s)	81, 734
BseGI	GGATG	2 cut(s)	387, 447
BseLI	CCNNNNNNNGG	3 cut(s)	437, 699, 746
BseMI	GCAATG	1 cut(s)	849
BseMII	CTCAG	5 cut(s)	129, 300, 321, 477, 558
BseNI	ACTGG	4 cut(s)	128, 577, 674, 816
BseYI	CCCAGC	1 cut(s)	18
BshFI	GGCC	1 cut(s)	739
BshVI	ATCGAT	1 cut(s)	778
BsiHKAI	GWGCWC	4 cut(s)	144, 455, 510, 834
BslI	CCNNNNNNNGG	3 cut(s)	437, 699, 746
BsmAI	GTCTC	4 cut(s)	310, 368, 432, 563
BsmBI	CGTCTC	1 cut(s)	368
BsnI	GGCC	1 cut(s)	739
Bso31I	GGTCTC	1 cut(s)	310
Bsp1286I	GDGCHC	4 cut(s)	144, 455, 510, 834
Bsp1407I	TGTACA	1 cut(s)	395
Bsp143I	GATC	3 cut(s)	354, 775, 779
Bsp19I	CCATGG	1 cut(s)	81
BspANI	GGCC	1 cut(s)	739
BspCNI	CTCAG	5 cut(s)	130, 299, 320, 478, 559
BspDI	ATCGAT	1 cut(s)	778
BspMI	ACCTGC	1 cut(s)	77
BspTNI	GGTCTC	1 cut(s)	310
BsrDI	GCAATG	1 cut(s)	849
BsrGI	TGTACA	1 cut(s)	395
BsrI	ACTGG	4 cut(s)	128, 577, 674, 816
BssECI	CCNNGG	2 cut(s)	81, 734
BssMI	GATC	3 cut(s)	354, 775, 779
BssT1I	CCWWGG	1 cut(s)	81
Bst2UI	CCWGG	2 cut(s)	261, 735
Bst4CI	ACNGT	1 cut(s)	790
Bst6I	CTCTTC	1 cut(s)	543
BstAUI	TGTACA	1 cut(s)	395
BstBAI	YACGTR	2 cut(s)	94, 115
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	6 cut(s)	138, 162, 286, 307, 486, 567
BstDSI	CCRYGG	1 cut(s)	81
BstF5I	GGATG	2 cut(s)	387, 447
BstKTI	GATC	3 cut(s)	357, 778, 782
BstMAI	GTCTC	4 cut(s)	310, 368, 432, 563
BstMBI	GATC	3 cut(s)	354, 775, 779
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 605, 736, 846
BstNI	CCWGG	2 cut(s)	261, 735
BstNSI	RCATGY	1 cut(s)	70
BstSCI	CCNGG	2 cut(s)	259, 733
BstV2I	GAAGAC	2 cut(s)	83, 245
Bsu15I	ATCGAT	1 cut(s)	778
Bsu36I	CCTNAGG	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	739
BsuTUI	ATCGAT	1 cut(s)	778
BtgI	CCRYGG	1 cut(s)	81
BtsCI	GGATG	2 cut(s)	387, 447
BtsIMutI	CAGTG	1 cut(s)	12
BveI	ACCTGC	1 cut(s)	77
Cac8I	GCNNGC	1 cut(s)	129
CaiI	CAGNNNCTG	1 cut(s)	485
Cfr13I	GGNCC	1 cut(s)	737
ClaI	ATCGAT	1 cut(s)	778
Csp6I	GTAC	4 cut(s)	116, 155, 320, 396
CviAII	CATG	4 cut(s)	67, 82, 254, 541
CviQI	GTAC	4 cut(s)	116, 155, 320, 396
DdeI	CTNAG	6 cut(s)	138, 162, 286, 307, 486, 567
DpnI	GATC	3 cut(s)	356, 777, 781
DpnII	GATC	3 cut(s)	354, 775, 779
Eam1104I	CTCTTC	1 cut(s)	543
EarI	CTCTTC	1 cut(s)	543
Ecl136II	GAGCTC	3 cut(s)	142, 508, 832
Eco130I	CCWWGG	1 cut(s)	81
Eco24I	GRGCYC	3 cut(s)	144, 510, 834
Eco31I	GGTCTC	1 cut(s)	310
Eco53kI	GAGCTC	3 cut(s)	142, 508, 832
Eco57I	CTGAAG	1 cut(s)	570
Eco81I	CCTNAGG	1 cut(s)	162
EcoICRI	GAGCTC	3 cut(s)	142, 508, 832
EcoRII	CCWGG	2 cut(s)	259, 733
EcoT14I	CCWWGG	1 cut(s)	81
EcoT22I	ATGCAT	1 cut(s)	43
EcoT38I	GRGCYC	3 cut(s)	144, 510, 834
ErhI	CCWWGG	1 cut(s)	81
Esp3I	CGTCTC	1 cut(s)	368
FaeI	CATG	4 cut(s)	70, 85, 257, 544
FatI	CATG	4 cut(s)	66, 81, 253, 540
FauNDI	CATATG	2 cut(s)	335, 601
FokI	GGATG	2 cut(s)	394, 454
FriOI	GRGCYC	3 cut(s)	144, 510, 834
GsaI	CCCAGC	1 cut(s)	22
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	739
Hin1II	CATG	4 cut(s)	70, 85, 257, 544
HinfI	GANTC	3 cut(s)	194, 388, 425
HphI	GGTGA	3 cut(s)	397, 719, 785
Hpy166II	GTNNAC	1 cut(s)	679
Hpy188I	TCNGA	4 cut(s)	139, 289, 496, 589
Hpy188III	TCNNGA	1 cut(s)	653
Hpy8I	GTNNAC	1 cut(s)	679
HpyAV	CCTTC	3 cut(s)	67, 655, 707
HpyCH4III	ACNGT	1 cut(s)	790
HpyCH4IV	ACGT	2 cut(s)	93, 114
HpyCH4V	TGCA	5 cut(s)	41, 112, 131, 231, 329
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 605, 736, 846
HpyF3I	CTNAG	6 cut(s)	138, 162, 286, 307, 486, 567
HpySE526I	ACGT	2 cut(s)	93, 114
Hsp92II	CATG	4 cut(s)	70, 85, 257, 544
Kzo9I	GATC	3 cut(s)	354, 775, 779
LmnI	GCTCC	4 cut(s)	147, 263, 450, 846
LweI	GCATC	1 cut(s)	28
MaeII	ACGT	2 cut(s)	93, 114
MaeIII	GTNAC	4 cut(s)	89, 166, 385, 784
MalI	GATC	3 cut(s)	356, 777, 781
MboI	GATC	3 cut(s)	354, 775, 779
MboII	GAAGA	5 cut(s)	88, 250, 539, 560, 576
MfeI	CAATTG	1 cut(s)	841
MhlI	GDGCHC	4 cut(s)	144, 455, 510, 834
MlyI	GAGTC	2 cut(s)	382, 434
MnlI	CCTC	4 cut(s)	61, 372, 481, 748
Mph1103I	ATGCAT	1 cut(s)	43
MseI	TTAA	5 cut(s)	183, 273, 459, 696, 768
MslI	CAYNNNNRTG	1 cut(s)	65
MspA1I	CMGCKG	1 cut(s)	820
MspR9I	CCNGG	2 cut(s)	261, 735
MunI	CAATTG	1 cut(s)	841
MvaI	CCWGG	2 cut(s)	261, 735
MwoI	GCNNNNNNNGC	4 cut(s)	47, 605, 736, 846
NcoI	CCATGG	1 cut(s)	81
NdeI	CATATG	2 cut(s)	335, 601
NdeII	GATC	3 cut(s)	354, 775, 779
NlaIII	CATG	4 cut(s)	70, 85, 257, 544
NmuCI	GTSAC	2 cut(s)	385, 784
NsiI	ATGCAT	1 cut(s)	43
NspI	RCATGY	1 cut(s)	70
PciI	ACATGT	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	194
PflMI	CCANNNNNTGG	2 cut(s)	437, 746
PfoI	TCCNGGA	1 cut(s)	259
PleI	GAGTC	2 cut(s)	382, 433
PpsI	GAGTC	2 cut(s)	382, 433
Ppu21I	YACGTR	2 cut(s)	94, 115
PscI	ACATGT	1 cut(s)	66
PshBI	ATTAAT	1 cut(s)	696
Psp124BI	GAGCTC	3 cut(s)	144, 510, 834
Psp6I	CCWGG	2 cut(s)	259, 733
PspFI	CCCAGC	1 cut(s)	18
PspGI	CCWGG	2 cut(s)	259, 733
PspPI	GGNCC	1 cut(s)	737
PstNI	CAGNNNCTG	1 cut(s)	485
PvuII	CAGCTG	1 cut(s)	820
RsaI	GTAC	4 cut(s)	117, 156, 321, 397
RsaNI	GTAC	4 cut(s)	116, 155, 320, 396
RseI	CAYNNNNRTG	1 cut(s)	65
SacI	GAGCTC	3 cut(s)	144, 510, 834
SaqAI	TTAA	5 cut(s)	183, 273, 459, 696, 768
Sau3AI	GATC	3 cut(s)	354, 775, 779
Sau96I	GGNCC	1 cut(s)	737
ScaI	AGTACT	2 cut(s)	156, 321
SchI	GAGTC	2 cut(s)	382, 434
ScrFI	CCNGG	2 cut(s)	261, 735
SduI	GDGCHC	4 cut(s)	144, 455, 510, 834
SfaNI	GCATC	1 cut(s)	28
SmiMI	CAYNNNNRTG	1 cut(s)	65
SstI	GAGCTC	3 cut(s)	144, 510, 834
StyD4I	CCNGG	2 cut(s)	259, 733
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	790
TaiI	ACGT	2 cut(s)	96, 117
TaqI	TCGA	1 cut(s)	778
TatI	WGTACW	3 cut(s)	154, 319, 395
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	5 cut(s)	183, 273, 459, 696, 768
Tru9I	TTAA	5 cut(s)	183, 273, 459, 696, 768
TscAI	CASTG	1 cut(s)	12
TseFI	GTSAC	2 cut(s)	385, 784
Tsp45I	GTSAC	2 cut(s)	385, 784
TspDTI	ATGAA	5 cut(s)	49, 242, 251, 546, 726
TspGWI	ACGGA	1 cut(s)	398
TspRI	CASTG	1 cut(s)	12
Van91I	CCANNNNNTGG	2 cut(s)	437, 746
VspI	ATTAAT	1 cut(s)	696
XapI	RAATTY	4 cut(s)	296, 404, 419, 625
XceI	RCATGY	1 cut(s)	70
ZrmI	AGTACT	2 cut(s)	156, 321
Zsp2I	ATGCAT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.