Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002892.1

Orthogroup ID

OG0000453

Physical Location & Seq

Genomic Coordinates Reverse (-)

172577 .. 173434

Gene Structure 858 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002892.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

atgtcagtgggaattagctgggcaaatgttcttggagatgcattttcagcctcaaccttcatcaaccattggggaaagaccatggcaggtcttgtgccacacaagtctctgcatgtactagaccgacctgcaaaatctgagcccccactttcagtacttcccaatctaataccaaatgtagtgaaaagggttgattcggttggcgatttatggctcacacccaacaactgcaagatgaagacacatacttttcatgttcaggcagagaaaattaaccattttctctcaaaccaaagatccgaggtctcagcttttgaagtactctctgcaatcatatggagagccttgtccaagatcaaggaagacccagaagagacaaggatggtgactctttgtacaaacaaatcccgtgaaagagaatttgagtttccaagtaataggatggtatggagtatagttaaagcagattcctgggttgcagaagctgaggtttcagaactggtggagctcattttgaacaaaagagaagatgagaatggcatgattgaagaggtgacggggaataatgagactgggaaaaaatcttcagacttcatagcatatggggcaaaattgacatttgtgaatttggaagaaatagagatttatgggcttgaattgaaagggcaaaagccagtttatgcaaactattccattaatggggttggtgatgaaggagttgtcttggtgcttccagggccaaaatgtggtaaggagggagatggtgttaatggtgatcgatttgtgactgtggttatgcctgaaaatcaactagcacagctgaaagttgagctaaaaaagaattggagtattgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009555 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016053 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048229 GO:0048856 GO:0071704 GO:0072330 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

285

Amino Acids

31.74

Weight (kDa)

5.64

Isoelectric Point (pI)

32.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24510
fragaria_vesca	FvH4_5g34840 FvH4_5g34850
malus_domestica	MD08G1199200.v1.1 MD08G1199300.v1.1 MD15G1386300.v1.1 MD15G1386800.v1.1
prunus_persica	Prupe.1G533000_v2.0.a1
pyrus_communis	pycom08g17310 pycom15g34640 pycom15g34680
rosa_chinensis	RchiOBHm_Chr1g0364531 RchiOBHm_Chr4g0415781 RchiOBHm_Chr7g0232591 RchiOBHm_Chr7g0235521 RchiOBHm_Chr7g0235551 RchiOBHm_Chr7g0235561 RchiOBHm_Chr7g0235611 RchiOBHm_Chr7g0235721 RchiOBHm_Chr7g0235771
rosa_laevigata	RLG00000001141 RLG00000001147 RLG00000001148 RLG00000001151 RLG00000001152 RLG00000001321 RLG00000029743
rosa_multiflora	Rmu_co8320053.1_g000001 Rmu_co8402261.1_g000001 Rmu_co8447535.1_g000001 Rmu_sc0001912.1_g000001 Rmu_sc0001912.1_g000003 Rmu_sc0002617.1_g000016 Rmu_sc0002617.1_g000017 Rmu_sc0002892.1_g000022 Rmu_sc0002892.1_g000023 Rmu_sc0002892.1_g000041 Rmu_sc0002892.1_g000042 Rmu_sc0007994.1_g000006 Rmu_sc0010963.1_g000008 Rmu_sc0011151.1_g000005 Rmu_sc0012467.1_g000003 Rmu_ssc0000471.1_g000012 Rmu_ssc0000471.1_g000013
rosa_roxburghii	Rroxscaffold_3G00225680 Rroxscaffold_3G00225800 Rroxscaffold_3G00225870 Rroxscaffold_3G00228130 Rroxscaffold_6G00391050
rosa_rugosa	Rorug07G0275200 Rorug07G0291500.1 Rorug07G0292000 Rorug07G0292200 Rorug07G0292500 Rorug07G0295900
rosa_samantha	Rh7AG430000 Rh7AG446600 Rh7AG446800 Rh7AG447200 Rh7AG447300 Rh7AG447500 Rh7BG403500 Rh7BG418300 Rh7BG418400 Rh7BG418800 Rh7BG419000 Rh7BG419100 Rh7BG419300 Rh7BG419400 Rh7BG419500 Rh7BG419700 Rh7CG448700 Rh7CG466600 Rh7CG467000 Rh7CG467200 Rh7CG467300 Rh7CG467400 Rh7CG467500 Rh7CG468000 Rh7DG419700 Rh7DG435300 Rh7DG435400 Rh7DG435500 Rh7DG435600 Rh7DG436000 Rh7DG436500
rosa_wichuraiana	Rw0G011890 Rw7G035510 Rw7G037080 Rw7G037090 Rw7G037110 Rw7G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	77, 136
AccB7I	CCANNNNNTGG	1 cut(s)	746
AclWI	GGATC	1 cut(s)	291
AcsI	RAATTY	2 cut(s)	419, 625
AcuI	CTGAAG	1 cut(s)	570
AfaI	GTAC	4 cut(s)	117, 156, 321, 397
AfiI	CCNNNNNNNGG	2 cut(s)	699, 746
AgsI	TTSAA	5 cut(s)	317, 517, 548, 656, 661
AjnI	CCWGG	2 cut(s)	470, 733
AluBI	AGCT	6 cut(s)	18, 311, 485, 508, 820, 832
AluI	AGCT	6 cut(s)	18, 311, 485, 508, 820, 832
Alw21I	GWGCWC	1 cut(s)	510
Alw26I	GTCTC	4 cut(s)	111, 310, 368, 563
AlwI	GGATC	1 cut(s)	291
AlwNI	CAGNNNCTG	1 cut(s)	485
AoxI	GGCC	1 cut(s)	737
ApoI	RAATTY	2 cut(s)	419, 625
AseI	ATTAAT	1 cut(s)	696
AspS9I	GGNCC	1 cut(s)	737
AsuHPI	GGTGA	4 cut(s)	397, 565, 719, 785
BanII	GRGCYC	2 cut(s)	144, 510
BbsI	GAAGAC	2 cut(s)	245, 369
Bbv12I	GWGCWC	1 cut(s)	510
BbvCI	CCTCAGC	1 cut(s)	486
BccI	CCATC	3 cut(s)	376, 436, 755
BciT130I	CCWGG	2 cut(s)	472, 735
BcoDI	GTCTC	4 cut(s)	111, 310, 368, 563
BfaI	CTAG	2 cut(s)	119, 812
BfuAI	ACCTGC	2 cut(s)	77, 136
BmcAI	AGTACT	2 cut(s)	156, 321
Bme1390I	CCNGG	2 cut(s)	472, 735
BmgT120I	GGNCC	1 cut(s)	737
BmrFI	CCNGG	2 cut(s)	472, 735
BmrI	ACTGGG	1 cut(s)	582
BmsI	GCATC	1 cut(s)	28
BmuI	ACTGGG	1 cut(s)	582
BpiI	GAAGAC	2 cut(s)	245, 369
Bpu10I	CCTNAGC	1 cut(s)	486
Bsa29I	ATCGAT	1 cut(s)	778
BsaI	GGTCTC	1 cut(s)	310
BsaJI	CCNNGG	4 cut(s)	81, 300, 471, 734
BsaXI	ACNNNNNCTCC	2 cut(s)	750, 780
Bsc4I	CCNNNNNNNGG	2 cut(s)	699, 746
Bse1I	ACTGG	3 cut(s)	504, 577, 674
BseBI	CCWGG	2 cut(s)	472, 735
BseCI	ATCGAT	1 cut(s)	778
BseDI	CCNNGG	4 cut(s)	81, 300, 471, 734
BseGI	GGATG	2 cut(s)	387, 447
BseLI	CCNNNNNNNGG	2 cut(s)	699, 746
BseMII	CTCAG	3 cut(s)	129, 321, 477
BseNI	ACTGG	3 cut(s)	504, 577, 674
BseYI	CCCAGC	1 cut(s)	18
BshFI	GGCC	1 cut(s)	739
BshVI	ATCGAT	1 cut(s)	778
BsiHKAI	GWGCWC	1 cut(s)	510
BslI	CCNNNNNNNGG	2 cut(s)	699, 746
BsmAI	GTCTC	4 cut(s)	111, 310, 368, 563
BsnI	GGCC	1 cut(s)	739
Bso31I	GGTCTC	1 cut(s)	310
Bsp1286I	GDGCHC	2 cut(s)	144, 510
Bsp1407I	TGTACA	1 cut(s)	395
Bsp143I	GATC	3 cut(s)	296, 354, 775
Bsp19I	CCATGG	1 cut(s)	81
BspANI	GGCC	1 cut(s)	739
BspCNI	CTCAG	3 cut(s)	130, 320, 478
BspDI	ATCGAT	1 cut(s)	778
BspMI	ACCTGC	2 cut(s)	77, 136
BspPI	GGATC	1 cut(s)	291
BspTNI	GGTCTC	1 cut(s)	310
BsrGI	TGTACA	1 cut(s)	395
BsrI	ACTGG	3 cut(s)	504, 577, 674
BssECI	CCNNGG	4 cut(s)	81, 300, 471, 734
BssMI	GATC	3 cut(s)	296, 354, 775
BssT1I	CCWWGG	1 cut(s)	81
Bst2UI	CCWGG	2 cut(s)	472, 735
Bst4CI	ACNGT	1 cut(s)	790
Bst6I	CTCTTC	2 cut(s)	366, 543
BstAUI	TGTACA	1 cut(s)	395
BstDEI	CTNAG	3 cut(s)	138, 307, 486
BstDSI	CCRYGG	1 cut(s)	81
BstF5I	GGATG	2 cut(s)	387, 447
BstKTI	GATC	3 cut(s)	299, 357, 778
BstMAI	GTCTC	4 cut(s)	111, 310, 368, 563
BstMBI	GATC	3 cut(s)	296, 354, 775
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 605, 736
BstNI	CCWGG	2 cut(s)	472, 735
BstNSI	RCATGY	1 cut(s)	116
BstSCI	CCNGG	2 cut(s)	470, 733
BstV2I	GAAGAC	2 cut(s)	245, 369
BstX2I	RGATCY	1 cut(s)	296
BstYI	RGATCY	1 cut(s)	296
Bsu15I	ATCGAT	1 cut(s)	778
BsuRI	GGCC	1 cut(s)	739
BsuTUI	ATCGAT	1 cut(s)	778
BtgI	CCRYGG	1 cut(s)	81
BtsCI	GGATG	2 cut(s)	387, 447
BtsIMutI	CAGTG	1 cut(s)	12
BveI	ACCTGC	2 cut(s)	77, 136
CaiI	CAGNNNCTG	1 cut(s)	485
Cfr13I	GGNCC	1 cut(s)	737
ClaI	ATCGAT	1 cut(s)	778
Csp6I	GTAC	4 cut(s)	116, 155, 320, 396
CviAII	CATG	4 cut(s)	82, 113, 254, 541
CviQI	GTAC	4 cut(s)	116, 155, 320, 396
DdeI	CTNAG	3 cut(s)	138, 307, 486
DpnI	GATC	3 cut(s)	298, 356, 777
DpnII	GATC	3 cut(s)	296, 354, 775
Eam1104I	CTCTTC	2 cut(s)	366, 543
EarI	CTCTTC	2 cut(s)	366, 543
Ecl136II	GAGCTC	1 cut(s)	508
Eco130I	CCWWGG	1 cut(s)	81
Eco24I	GRGCYC	2 cut(s)	144, 510
Eco31I	GGTCTC	1 cut(s)	310
Eco53kI	GAGCTC	1 cut(s)	508
Eco57I	CTGAAG	1 cut(s)	570
EcoICRI	GAGCTC	1 cut(s)	508
EcoRII	CCWGG	2 cut(s)	470, 733
EcoT14I	CCWWGG	1 cut(s)	81
EcoT22I	ATGCAT	1 cut(s)	43
EcoT38I	GRGCYC	2 cut(s)	144, 510
ErhI	CCWWGG	1 cut(s)	81
FaeI	CATG	4 cut(s)	85, 116, 257, 544
FatI	CATG	4 cut(s)	81, 112, 253, 540
FauNDI	CATATG	2 cut(s)	335, 601
FokI	GGATG	2 cut(s)	394, 454
FriOI	GRGCYC	2 cut(s)	144, 510
FspBI	CTAG	2 cut(s)	119, 812
GsaI	CCCAGC	1 cut(s)	22
HaeIII	GGCC	1 cut(s)	739
Hin1II	CATG	4 cut(s)	85, 116, 257, 544
HinfI	GANTC	3 cut(s)	194, 388, 467
HphI	GGTGA	4 cut(s)	397, 565, 719, 785
Hpy188I	TCNGA	4 cut(s)	139, 301, 496, 589
HpyAV	CCTTC	2 cut(s)	67, 707
HpyCH4III	ACNGT	1 cut(s)	790
HpyCH4V	TGCA	7 cut(s)	41, 112, 131, 231, 329, 479, 683
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 605, 736
HpyF3I	CTNAG	3 cut(s)	138, 307, 486
Hsp92II	CATG	4 cut(s)	85, 116, 257, 544
Kzo9I	GATC	3 cut(s)	296, 354, 775
LmnI	GCTCC	1 cut(s)	505
LweI	GCATC	1 cut(s)	28
MaeI	CTAG	2 cut(s)	119, 812
MaeIII	GTNAC	3 cut(s)	385, 553, 784
MalI	GATC	3 cut(s)	298, 356, 777
MboI	GATC	3 cut(s)	296, 354, 775
MboII	GAAGA	7 cut(s)	250, 374, 383, 539, 560, 576, 644
MflI	RGATCY	1 cut(s)	296
MhlI	GDGCHC	2 cut(s)	144, 510
MluCI	AATT	7 cut(s)	12, 270, 419, 611, 625, 656, 841
MlyI	GAGTC	1 cut(s)	382
MnlI	CCTC	5 cut(s)	61, 295, 481, 544, 748
Mph1103I	ATGCAT	1 cut(s)	43
MseI	TTAA	4 cut(s)	273, 459, 696, 768
MspA1I	CMGCKG	1 cut(s)	820
MspR9I	CCNGG	2 cut(s)	472, 735
MvaI	CCWGG	2 cut(s)	472, 735
MwoI	GCNNNNNNNGC	3 cut(s)	47, 605, 736
NcoI	CCATGG	1 cut(s)	81
NdeI	CATATG	2 cut(s)	335, 601
NdeII	GATC	3 cut(s)	296, 354, 775
NlaIII	CATG	4 cut(s)	85, 116, 257, 544
NmuCI	GTSAC	3 cut(s)	385, 553, 784
NsiI	ATGCAT	1 cut(s)	43
NspI	RCATGY	1 cut(s)	116
PfeI	GAWTC	2 cut(s)	194, 467
PflMI	CCANNNNNTGG	1 cut(s)	746
PleI	GAGTC	1 cut(s)	382
PpsI	GAGTC	1 cut(s)	382
PshBI	ATTAAT	1 cut(s)	696
Psp124BI	GAGCTC	1 cut(s)	510
Psp6I	CCWGG	2 cut(s)	470, 733
PspFI	CCCAGC	1 cut(s)	18
PspGI	CCWGG	2 cut(s)	470, 733
PspPI	GGNCC	1 cut(s)	737
PstNI	CAGNNNCTG	1 cut(s)	485
PsuI	RGATCY	1 cut(s)	296
PvuII	CAGCTG	1 cut(s)	820
RsaI	GTAC	4 cut(s)	117, 156, 321, 397
RsaNI	GTAC	4 cut(s)	116, 155, 320, 396
SacI	GAGCTC	1 cut(s)	510
SaqAI	TTAA	4 cut(s)	273, 459, 696, 768
Sau3AI	GATC	3 cut(s)	296, 354, 775
Sau96I	GGNCC	1 cut(s)	737
ScaI	AGTACT	2 cut(s)	156, 321
SchI	GAGTC	1 cut(s)	382
ScrFI	CCNGG	2 cut(s)	472, 735
SduI	GDGCHC	2 cut(s)	144, 510
SfaNI	GCATC	1 cut(s)	28
Sse9I	AATT	7 cut(s)	12, 270, 419, 611, 625, 656, 841
SspMI	CTAG	2 cut(s)	119, 812
SstI	GAGCTC	1 cut(s)	510
StyD4I	CCNGG	2 cut(s)	470, 733
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	790
TaqI	TCGA	1 cut(s)	778
TaqII	GACCGA	1 cut(s)	138
TasI	AATT	7 cut(s)	12, 270, 419, 611, 625, 656, 841
TatI	WGTACW	4 cut(s)	115, 154, 319, 395
TfiI	GAWTC	2 cut(s)	194, 467
Tru1I	TTAA	4 cut(s)	273, 459, 696, 768
Tru9I	TTAA	4 cut(s)	273, 459, 696, 768
TscAI	CASTG	1 cut(s)	12
TseFI	GTSAC	3 cut(s)	385, 553, 784
Tsp45I	GTSAC	3 cut(s)	385, 553, 784
TspDTI	ATGAA	5 cut(s)	49, 242, 251, 583, 726
TspRI	CASTG	1 cut(s)	12
Van91I	CCANNNNNTGG	1 cut(s)	746
VspI	ATTAAT	1 cut(s)	696
XapI	RAATTY	2 cut(s)	419, 625
XceI	RCATGY	1 cut(s)	116
XspI	CTAG	2 cut(s)	119, 812
ZrmI	AGTACT	2 cut(s)	156, 321
Zsp2I	ATGCAT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.