Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000453

Physical Location & Seq

Genomic Coordinates Reverse (-)

61892641 .. 61892892

Gene Structure 252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG435500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGTGTCATCAACTGACAACATCCACTGCCTCAAGTCCAGCATGAGACTGTCGTCCGTCGCCCCAGCAACGGTGACCGGTCGGAAGGTCCATGAGCTGACCAACGTGGACTTGGCTATGAAGCTACACTACATCAAAGGGGTCTACTTTTTCAACAGTTATGCAGTCGAGGGGCTTACGGTGTTTGACTTGAAGAAGCCTATGGTCATCCATTTGCTTCCACTCTACTTTGTTGCCGCCGGGAGAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009555 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016053 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048229 GO:0048856 GO:0071704 GO:0072330 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

83

Amino Acids

9.26

Weight (kDa)

9.46

Isoelectric Point (pI)

28.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24510
fragaria_vesca	FvH4_5g34840 FvH4_5g34850
malus_domestica	MD08G1199200.v1.1 MD08G1199300.v1.1 MD15G1386300.v1.1 MD15G1386800.v1.1
prunus_persica	Prupe.1G533000_v2.0.a1
pyrus_communis	pycom08g17310 pycom15g34640 pycom15g34680
rosa_chinensis	RchiOBHm_Chr1g0364531 RchiOBHm_Chr4g0415781 RchiOBHm_Chr7g0232591 RchiOBHm_Chr7g0235521 RchiOBHm_Chr7g0235551 RchiOBHm_Chr7g0235561 RchiOBHm_Chr7g0235611 RchiOBHm_Chr7g0235721 RchiOBHm_Chr7g0235771
rosa_laevigata	RLG00000001141 RLG00000001147 RLG00000001148 RLG00000001151 RLG00000001152 RLG00000001321 RLG00000029743
rosa_multiflora	Rmu_co8320053.1_g000001 Rmu_co8402261.1_g000001 Rmu_co8447535.1_g000001 Rmu_sc0001912.1_g000001 Rmu_sc0001912.1_g000003 Rmu_sc0002617.1_g000016 Rmu_sc0002617.1_g000017 Rmu_sc0002892.1_g000022 Rmu_sc0002892.1_g000023 Rmu_sc0002892.1_g000041 Rmu_sc0002892.1_g000042 Rmu_sc0007994.1_g000006 Rmu_sc0010963.1_g000008 Rmu_sc0011151.1_g000005 Rmu_sc0012467.1_g000003 Rmu_ssc0000471.1_g000012 Rmu_ssc0000471.1_g000013
rosa_roxburghii	Rroxscaffold_3G00225680 Rroxscaffold_3G00225800 Rroxscaffold_3G00225870 Rroxscaffold_3G00228130 Rroxscaffold_6G00391050
rosa_rugosa	Rorug07G0275200 Rorug07G0291500.1 Rorug07G0292000 Rorug07G0292200 Rorug07G0292500 Rorug07G0295900
rosa_samantha	Rh7AG430000 Rh7AG446600 Rh7AG446800 Rh7AG447200 Rh7AG447300 Rh7AG447500 Rh7BG403500 Rh7BG418300 Rh7BG418400 Rh7BG418800 Rh7BG419000 Rh7BG419100 Rh7BG419300 Rh7BG419400 Rh7BG419500 Rh7BG419700 Rh7CG448700 Rh7CG466600 Rh7CG467000 Rh7CG467200 Rh7CG467300 Rh7CG467400 Rh7CG467500 Rh7CG468000 Rh7DG419700 Rh7DG435300 Rh7DG435400 Rh7DG435500 Rh7DG435600 Rh7DG436000 Rh7DG436500
rosa_wichuraiana	Rw0G011890 Rw7G035510 Rw7G037080 Rw7G037090 Rw7G037110 Rw7G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	144
AciI	CCGC	1 cut(s)	237
AfiI	CCNNNNNNNGG	1 cut(s)	70
AgeI	ACCGGT	1 cut(s)	77
AgsI	TTSAA	2 cut(s)	154, 193
AluBI	AGCT	2 cut(s)	97, 124
AluI	AGCT	2 cut(s)	97, 124
Alw26I	GTCTC	1 cut(s)	40
AsiGI	ACCGGT	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	88
AsuC2I	CCSGG	1 cut(s)	241
AsuHPI	GGTGA	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	88
BarI	GAAGNNNNNNTAC	2 cut(s)	113, 145
BcnI	CCSGG	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	40
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
Bme1390I	CCNGG	1 cut(s)	241
Bme18I	GGWCC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	88
BmrFI	CCNGG	1 cut(s)	241
BoxI	GACNNNNGTC	1 cut(s)	52
BpuEI	CTTGAG	1 cut(s)	17
BpuMI	CCSGG	1 cut(s)	241
BsaWI	WCCGGW	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse118I	RCCGGY	1 cut(s)	77
BseGI	GGATG	2 cut(s)	21, 207
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseYI	CCCAGC	1 cut(s)	64
Bsh1285I	CGRYCG	1 cut(s)	82
BshTI	ACCGGT	1 cut(s)	77
BsiEI	CGRYCG	1 cut(s)	82
BsiSI	CCGG	2 cut(s)	78, 240
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmAI	GTCTC	1 cut(s)	40
BspACI	CCGC	1 cut(s)	237
BsrFI	RCCGGY	1 cut(s)	77
BssAI	RCCGGY	1 cut(s)	77
Bst4CI	ACNGT	4 cut(s)	51, 73, 158, 181
BstEII	GGTNACC	1 cut(s)	73
BstF5I	GGATG	2 cut(s)	21, 207
BstMAI	GTCTC	1 cut(s)	40
BstMCI	CGRYCG	1 cut(s)	82
BstPAI	GACNNNNGTC	1 cut(s)	52
BstPI	GGTNACC	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	239
BtsCI	GGATG	2 cut(s)	21, 207
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	25
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	88
CspAI	ACCGGT	1 cut(s)	77
CviAII	CATG	2 cut(s)	43, 92
CviJI	RGCY	5 cut(s)	97, 116, 124, 175, 199
CviKI_1	RGCY	5 cut(s)	97, 116, 124, 175, 199
Eco47I	GGWCC	1 cut(s)	88
Eco91I	GGTNACC	1 cut(s)	73
EcoO65I	GGTNACC	1 cut(s)	73
FaeI	CATG	2 cut(s)	46, 95
FaiI	YATR	5 cut(s)	44, 93, 119, 162, 203
FatI	CATG	2 cut(s)	42, 91
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	1 cut(s)	237
FokI	GGATG	2 cut(s)	8, 194
Fsp4HI	GCNGC	1 cut(s)	237
GluI	GCNGC	1 cut(s)	237
GsaI	CCCAGC	1 cut(s)	68
HapII	CCGG	2 cut(s)	78, 240
Hin1II	CATG	2 cut(s)	46, 95
HinfI	GANTC	1 cut(s)	246
HpaII	CCGG	2 cut(s)	78, 240
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	2 cut(s)	109, 145
Hpy188I	TCNGA	2 cut(s)	84, 251
Hpy8I	GTNNAC	2 cut(s)	109, 145
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	79
HpyCH4III	ACNGT	4 cut(s)	51, 73, 158, 181
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	1 cut(s)	164
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	2 cut(s)	46, 95
LpnPI	CCDG	3 cut(s)	52, 78, 91
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	73
MboII	GAAGA	1 cut(s)	205
MmeI	TCCRAC	1 cut(s)	62
MnlI	CCTC	2 cut(s)	41, 163
MspI	CCGG	2 cut(s)	78, 240
MspR9I	CCNGG	1 cut(s)	241
NciI	CCSGG	1 cut(s)	241
NlaIII	CATG	2 cut(s)	46, 95
NmuCI	GTSAC	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	246
PinAI	ACCGGT	1 cut(s)	77
PkrI	GCNGC	1 cut(s)	238
PshAI	GACNNNNGTC	1 cut(s)	52
PspEI	GGTNACC	1 cut(s)	73
PspFI	CCCAGC	1 cut(s)	64
PspPI	GGNCC	1 cut(s)	88
SatI	GCNGC	1 cut(s)	237
Sau96I	GGNCC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	241
SetI	ASST	4 cut(s)	90, 99, 108, 126
SinI	GGWCC	1 cut(s)	88
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
SsiI	CCGC	1 cut(s)	237
StyD4I	CCNGG	1 cut(s)	239
TaaI	ACNGT	4 cut(s)	51, 73, 158, 181
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	1 cut(s)	168
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	1 cut(s)	246
TscAI	CASTG	1 cut(s)	32
TseFI	GTSAC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	1 cut(s)	134
TspGWI	ACGGA	1 cut(s)	46
TspRI	CASTG	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	88
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XmiI	GTMKAC	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.