Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000453

Physical Location & Seq

Genomic Coordinates Reverse (-)

60273200 .. 60274409

Gene Structure 1210 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21110

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGTGTCATCAACTGACAACATCCACCGCCTCAAGTCCAGCATGAGACTGTCGTCCGTCGCCCCAGCAACGGTGACCGGTCGGAAGGTCCATGAGCTGACCAACGTGGACTTGGCTATGAAGCTACACTACATCAAAGGGGTCTACTTTTTCAACAGCTATGCAGTCGAGGGGCTTACGGTGTTTGACTTGAAGAAGCCTATGGTCATCCATTTGCTTCCACTCTACTTTGTTGCCGCCGGGAGAATCCGAAGATCCGAAACGGGCCGGCCTTTCATCATGTGTAACGATGGCGGTGTGAGAATTGTGGAGGCACGTTGTGACGAAACGGTCGATGAATGGTTGGCCATGGCTGTGGAGGATGATTCTACTTTTGATGGTCTTGCTTATAATCAAGCACTTGGTGATACTGATCTTGATTTCTCTCCTCTGGTCTTTATACAGTTCACTTGGTTCAAATGTGGAGGAATGTCAGTGGGAATTAGCTGGGCAAATGTCCTTGGAGATGCATTTTCAGCCTCAACCTTCGTCAACCTGTGGGGGAAGACCATGGCAGGTTACGTGCCTCACAAGTCACTACACGTACCAGACTGGCCTGCAAAACCTAAGCTCCCACTTTTAGTTCTTCCCAAGGTAACACCAAACGCCCTTAAAAGGATTGATTCAGTTGGCGACTTATGGCTCACACCACTACTAGAAATTTGGGCAAAGGCTACCGATTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009555 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016053 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048229 GO:0048856 GO:0071704 GO:0072330 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

241

Amino Acids

26.83

Weight (kDa)

6.59

Isoelectric Point (pI)

32.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	19 - 189	7.8e-27	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24510
fragaria_vesca	FvH4_5g34840 FvH4_5g34850
malus_domestica	MD08G1199200.v1.1 MD08G1199300.v1.1 MD15G1386300.v1.1 MD15G1386800.v1.1
prunus_persica	Prupe.1G533000_v2.0.a1
pyrus_communis	pycom08g17310 pycom15g34640 pycom15g34680
rosa_chinensis	RchiOBHm_Chr1g0364531 RchiOBHm_Chr4g0415781 RchiOBHm_Chr7g0232591 RchiOBHm_Chr7g0235521 RchiOBHm_Chr7g0235551 RchiOBHm_Chr7g0235561 RchiOBHm_Chr7g0235611 RchiOBHm_Chr7g0235721 RchiOBHm_Chr7g0235771
rosa_laevigata	RLG00000001141 RLG00000001147 RLG00000001148 RLG00000001151 RLG00000001152 RLG00000001321 RLG00000029743
rosa_multiflora	Rmu_co8320053.1_g000001 Rmu_co8402261.1_g000001 Rmu_co8447535.1_g000001 Rmu_sc0001912.1_g000001 Rmu_sc0001912.1_g000003 Rmu_sc0002617.1_g000016 Rmu_sc0002617.1_g000017 Rmu_sc0002892.1_g000022 Rmu_sc0002892.1_g000023 Rmu_sc0002892.1_g000041 Rmu_sc0002892.1_g000042 Rmu_sc0007994.1_g000006 Rmu_sc0010963.1_g000008 Rmu_sc0011151.1_g000005 Rmu_sc0012467.1_g000003 Rmu_ssc0000471.1_g000012 Rmu_ssc0000471.1_g000013
rosa_roxburghii	Rroxscaffold_3G00225680 Rroxscaffold_3G00225800 Rroxscaffold_3G00225870 Rroxscaffold_3G00228130 Rroxscaffold_6G00391050
rosa_rugosa	Rorug07G0275200 Rorug07G0291500.1 Rorug07G0292000 Rorug07G0292200 Rorug07G0292500 Rorug07G0295900
rosa_samantha	Rh7AG430000 Rh7AG446600 Rh7AG446800 Rh7AG447200 Rh7AG447300 Rh7AG447500 Rh7BG403500 Rh7BG418300 Rh7BG418400 Rh7BG418800 Rh7BG419000 Rh7BG419100 Rh7BG419300 Rh7BG419400 Rh7BG419500 Rh7BG419700 Rh7CG448700 Rh7CG466600 Rh7CG467000 Rh7CG467200 Rh7CG467300 Rh7CG467400 Rh7CG467500 Rh7CG468000 Rh7DG419700 Rh7DG435300 Rh7DG435400 Rh7DG435500 Rh7DG435600 Rh7DG436000 Rh7DG436500
rosa_wichuraiana	Rw0G011890 Rw7G035510 Rw7G037080 Rw7G037090 Rw7G037110 Rw7G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	390
AasI	GACNNNNNNGTC	1 cut(s)	329
Acc36I	ACCTGC	1 cut(s)	545
AccI	GTMKAC	1 cut(s)	144
AciI	CCGC	3 cut(s)	28, 237, 294
AclWI	GGATC	1 cut(s)	249
AcoI	YGGCCR	1 cut(s)	345
AcsI	RAATTY	1 cut(s)	699
AdeI	CACNNNGTG	2 cut(s)	320, 404
AfaI	GTAC	1 cut(s)	585
AfiI	CCNNNNNNNGG	2 cut(s)	70, 654
AflIII	ACRYGT	1 cut(s)	580
AgeI	ACCGGT	1 cut(s)	77
AgsI	TTSAA	3 cut(s)	154, 193, 457
AluBI	AGCT	5 cut(s)	97, 124, 159, 486, 610
AluI	AGCT	5 cut(s)	97, 124, 159, 486, 610
Alw26I	GTCTC	1 cut(s)	40
AlwI	GGATC	1 cut(s)	249
AoxI	GGCC	4 cut(s)	265, 269, 345, 593
ApoI	RAATTY	1 cut(s)	699
AsiGI	ACCGGT	1 cut(s)	77
AspS9I	GGNCC	2 cut(s)	88, 265
AsuC2I	CCSGG	1 cut(s)	241
AsuHPI	GGTGA	2 cut(s)	85, 416
AvaII	GGWCC	1 cut(s)	88
BalI	TGGCCA	1 cut(s)	347
BarI	GAAGNNNNNNTAC	2 cut(s)	113, 145
BbsI	GAAGAC	1 cut(s)	551
BccI	CCATC	2 cut(s)	284, 371
BcnI	CCSGG	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	40
BfaI	CTAG	2 cut(s)	695, 724
BfuAI	ACCTGC	1 cut(s)	545
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
Bme1390I	CCNGG	1 cut(s)	241
Bme18I	GGWCC	1 cut(s)	88
BmgT120I	GGNCC	2 cut(s)	88, 265
BmrFI	CCNGG	1 cut(s)	241
BmsI	GCATC	1 cut(s)	496
BoxI	GACNNNNGTC	1 cut(s)	52
BpiI	GAAGAC	1 cut(s)	551
Bpu10I	CCTNAGC	1 cut(s)	606
BpuEI	CTTGAG	1 cut(s)	17
BpuMI	CCSGG	1 cut(s)	241
BsaAI	YACGTR	2 cut(s)	562, 583
BsaBI	GATNNNNATC	1 cut(s)	411
BsaJI	CCNNGG	4 cut(s)	348, 499, 549, 630
BsaWI	WCCGGW	1 cut(s)	77
BsaXI	ACNNNNNCTCC	2 cut(s)	594, 624
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 654
Bse118I	RCCGGY	2 cut(s)	77, 267
Bse1I	ACTGG	1 cut(s)	596
Bse8I	GATNNNNATC	1 cut(s)	411
BseDI	CCNNGG	4 cut(s)	348, 499, 549, 630
BseGI	GGATG	3 cut(s)	21, 207, 367
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	2 cut(s)	70, 654
BseNI	ACTGG	1 cut(s)	596
BseRI	GAGGAG	1 cut(s)	417
BseYI	CCCAGC	2 cut(s)	64, 486
Bsh1285I	CGRYCG	2 cut(s)	82, 333
BshFI	GGCC	4 cut(s)	267, 271, 347, 595
BshTI	ACCGGT	1 cut(s)	77
BsiEI	CGRYCG	2 cut(s)	82, 333
BsiSI	CCGG	3 cut(s)	78, 240, 268
BslI	CCNNNNNNNGG	2 cut(s)	70, 654
BsmAI	GTCTC	1 cut(s)	40
BsnI	GGCC	4 cut(s)	267, 271, 347, 595
Bsp143I	GATC	2 cut(s)	254, 412
Bsp19I	CCATGG	2 cut(s)	348, 549
BspACI	CCGC	3 cut(s)	28, 237, 294
BspANI	GGCC	4 cut(s)	267, 271, 347, 595
BspMI	ACCTGC	1 cut(s)	545
BspPI	GGATC	1 cut(s)	249
BsrFI	RCCGGY	2 cut(s)	77, 267
BsrI	ACTGG	1 cut(s)	596
BssAI	RCCGGY	2 cut(s)	77, 267
BssECI	CCNNGG	4 cut(s)	348, 499, 549, 630
BssMI	GATC	2 cut(s)	254, 412
BssT1I	CCWWGG	4 cut(s)	348, 499, 549, 630
Bst4CI	ACNGT	5 cut(s)	51, 73, 181, 331, 444
BstBAI	YACGTR	2 cut(s)	562, 583
BstC8I	GCNNGC	2 cut(s)	269, 597
BstDEI	CTNAG	1 cut(s)	606
BstDSI	CCRYGG	2 cut(s)	348, 549
BstEII	GGTNACC	1 cut(s)	73
BstF5I	GGATG	3 cut(s)	21, 207, 367
BstKTI	GATC	2 cut(s)	257, 415
BstMAI	GTCTC	1 cut(s)	40
BstMBI	GATC	2 cut(s)	254, 412
BstMCI	CGRYCG	2 cut(s)	82, 333
BstMWI	GCNNNNNNNGC	1 cut(s)	515
BstPAI	GACNNNNGTC	1 cut(s)	52
BstPI	GGTNACC	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	239
BstV2I	GAAGAC	1 cut(s)	551
BstX2I	RGATCY	1 cut(s)	254
BstXI	CCANNNNNNTGG	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	254
BsuRI	GGCC	4 cut(s)	267, 271, 347, 595
BtgI	CCRYGG	2 cut(s)	348, 549
BtsCI	GGATG	3 cut(s)	21, 207, 367
BtsIMutI	CAGTG	1 cut(s)	480
BveI	ACCTGC	1 cut(s)	545
Cac8I	GCNNGC	2 cut(s)	269, 597
Cfr10I	RCCGGY	2 cut(s)	77, 267
Cfr13I	GGNCC	2 cut(s)	88, 265
Csp6I	GTAC	1 cut(s)	584
CspAI	ACCGGT	1 cut(s)	77
CviAII	CATG	5 cut(s)	43, 92, 280, 349, 550
CviQI	GTAC	1 cut(s)	584
DdeI	CTNAG	1 cut(s)	606
DpnI	GATC	2 cut(s)	256, 414
DpnII	GATC	2 cut(s)	254, 412
DraIII	CACNNNGTG	2 cut(s)	320, 404
DrdI	GACNNNNNNGTC	1 cut(s)	329
DseDI	GACNNNNNNGTC	1 cut(s)	329
EaeI	YGGCCR	1 cut(s)	345
Eco130I	CCWWGG	4 cut(s)	348, 499, 549, 630
Eco47I	GGWCC	1 cut(s)	88
Eco91I	GGTNACC	1 cut(s)	73
EcoO65I	GGTNACC	1 cut(s)	73
EcoT14I	CCWWGG	4 cut(s)	348, 499, 549, 630
EcoT22I	ATGCAT	1 cut(s)	511
ErhI	CCWWGG	4 cut(s)	348, 499, 549, 630
FaeI	CATG	5 cut(s)	46, 95, 283, 352, 553
FatI	CATG	5 cut(s)	42, 91, 279, 348, 549
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	1 cut(s)	237
FokI	GGATG	3 cut(s)	8, 194, 374
FseI	GGCCGGCC	1 cut(s)	271
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	2 cut(s)	695, 724
GluI	GCNGC	1 cut(s)	237
GsaI	CCCAGC	2 cut(s)	68, 490
HaeIII	GGCC	4 cut(s)	267, 271, 347, 595
HapII	CCGG	3 cut(s)	78, 240, 268
Hin1II	CATG	5 cut(s)	46, 95, 283, 352, 553
HincII	GTYRAC	1 cut(s)	532
HindII	GTYRAC	1 cut(s)	532
HinfI	GANTC	3 cut(s)	246, 365, 662
HpaII	CCGG	3 cut(s)	78, 240, 268
HphI	GGTGA	2 cut(s)	85, 416
Hpy166II	GTNNAC	4 cut(s)	109, 145, 447, 532
Hpy188I	TCNGA	3 cut(s)	84, 251, 259
Hpy188III	TCNNGA	1 cut(s)	416
Hpy8I	GTNNAC	4 cut(s)	109, 145, 447, 532
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	2 cut(s)	79, 535
HpyCH4III	ACNGT	5 cut(s)	51, 73, 181, 331, 444
HpyCH4IV	ACGT	4 cut(s)	105, 316, 561, 582
HpyCH4V	TGCA	3 cut(s)	164, 509, 599
HpyF10VI	GCNNNNNNNGC	1 cut(s)	515
HpyF3I	CTNAG	1 cut(s)	606
HpySE526I	ACGT	4 cut(s)	105, 316, 561, 582
Hsp92II	CATG	5 cut(s)	46, 95, 283, 352, 553
KroI	GCCGGC	1 cut(s)	267
KroNI	GCCGGC	1 cut(s)	269
Kzo9I	GATC	2 cut(s)	254, 412
LmnI	GCTCC	1 cut(s)	615
LweI	GCATC	1 cut(s)	496
MaeI	CTAG	2 cut(s)	695, 724
MaeII	ACGT	4 cut(s)	105, 316, 561, 582
MaeIII	GTNAC	6 cut(s)	73, 284, 320, 557, 573, 634
MalI	GATC	2 cut(s)	256, 414
MboI	GATC	2 cut(s)	254, 412
MboII	GAAGA	4 cut(s)	205, 264, 556, 617
MflI	RGATCY	1 cut(s)	254
MlsI	TGGCCA	1 cut(s)	347
MluCI	AATT	3 cut(s)	303, 480, 699
MluNI	TGGCCA	1 cut(s)	347
MmeI	TCCRAC	1 cut(s)	62
MnlI	CCTC	8 cut(s)	41, 163, 304, 352, 438, 458, 529, 576
Mox20I	TGGCCA	1 cut(s)	347
Mph1103I	ATGCAT	1 cut(s)	511
MroNI	GCCGGC	1 cut(s)	267
MscI	TGGCCA	1 cut(s)	347
MseI	TTAA	1 cut(s)	651
MslI	CAYNNNNRTG	1 cut(s)	353
Msp20I	TGGCCA	1 cut(s)	347
MspI	CCGG	3 cut(s)	78, 240, 268
MspR9I	CCNGG	1 cut(s)	241
MwoI	GCNNNNNNNGC	1 cut(s)	515
NaeI	GCCGGC	1 cut(s)	269
NciI	CCSGG	1 cut(s)	241
NcoI	CCATGG	2 cut(s)	348, 549
NdeII	GATC	2 cut(s)	254, 412
NgoMIV	GCCGGC	1 cut(s)	267
NlaIII	CATG	5 cut(s)	46, 95, 283, 352, 553
NmuCI	GTSAC	3 cut(s)	73, 320, 573
NsiI	ATGCAT	1 cut(s)	511
PcsI	WCGNNNNNNNCGW	1 cut(s)	330
PdiI	GCCGGC	1 cut(s)	269
PfeI	GAWTC	3 cut(s)	246, 365, 662
PinAI	ACCGGT	1 cut(s)	77
PkrI	GCNGC	1 cut(s)	238
Ppu21I	YACGTR	2 cut(s)	562, 583
PshAI	GACNNNNGTC	1 cut(s)	52
PsiI	TTATAA	1 cut(s)	390
PspEI	GGTNACC	1 cut(s)	73
PspFI	CCCAGC	2 cut(s)	64, 486
PspPI	GGNCC	2 cut(s)	88, 265
PsuI	RGATCY	1 cut(s)	254
RigI	GGCCGGCC	1 cut(s)	271
RsaI	GTAC	1 cut(s)	585
RsaNI	GTAC	1 cut(s)	584
RseI	CAYNNNNRTG	1 cut(s)	353
SaqAI	TTAA	1 cut(s)	651
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	2 cut(s)	254, 412
Sau96I	GGNCC	2 cut(s)	88, 265
ScrFI	CCNGG	1 cut(s)	241
SfaNI	GCATC	1 cut(s)	496
SinI	GGWCC	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	353
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	3 cut(s)	303, 480, 699
SsiI	CCGC	3 cut(s)	28, 237, 294
SspMI	CTAG	2 cut(s)	695, 724
StyD4I	CCNGG	1 cut(s)	239
StyI	CCWWGG	4 cut(s)	348, 499, 549, 630
TaaI	ACNGT	5 cut(s)	51, 73, 181, 331, 444
TaiI	ACGT	4 cut(s)	108, 319, 564, 585
TaqI	TCGA	2 cut(s)	168, 333
TasI	AATT	3 cut(s)	303, 480, 699
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	3 cut(s)	246, 365, 662
Tru1I	TTAA	1 cut(s)	651
Tru9I	TTAA	1 cut(s)	651
TscAI	CASTG	1 cut(s)	480
TseFI	GTSAC	3 cut(s)	73, 320, 573
Tsp45I	GTSAC	3 cut(s)	73, 320, 573
TspDTI	ATGAA	3 cut(s)	134, 265, 351
TspGWI	ACGGA	1 cut(s)	46
TspRI	CASTG	1 cut(s)	480
VpaK11BI	GGWCC	1 cut(s)	88
XapI	RAATTY	1 cut(s)	699
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XmiI	GTMKAC	1 cut(s)	144
XspI	CTAG	2 cut(s)	695, 724
Zsp2I	ATGCAT	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.