Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000453

Physical Location & Seq

Genomic Coordinates Reverse (-)

47320482 .. 47320874

Gene Structure 393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG418400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGTGTCATCAACTGACAACATCCACCGCCTCAATTCCAGCATGAGACTGTCGTCCGTCGCCCCAGCAACGGTGACCGGTCGGAAGGTCCATGAGCTGACCAACGTGGACTTGGCTATGAAGCTACACTACATCAAAGGGGTCTACTTTTTCAACAGTTATGCAGTCGAGGGGCTTACAGTGTTTGACTTGAAGAAGCCTATGGTCATCCATTTGCTTCCACTCTACTTTGTTGCCGCCGGGAGAATCCGAAGATCCGAAACAGGCCGGCCTTTCATCATGTGTAACGACGGCGGTGTGAGAATTGTGGAGGCACGTTGTGACGAAACGGTCGATGAATGGTTGGCCATGGCTGTGGAGGATGATTCTACTTTTGATGGTCTTTACTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009555 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016053 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048229 GO:0048856 GO:0071704 GO:0072330 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

130

Amino Acids

14.62

Weight (kDa)

6.05

Isoelectric Point (pI)

38.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	18 - 124	1.1e-12	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24510
fragaria_vesca	FvH4_5g34840 FvH4_5g34850
malus_domestica	MD08G1199200.v1.1 MD08G1199300.v1.1 MD15G1386300.v1.1 MD15G1386800.v1.1
prunus_persica	Prupe.1G533000_v2.0.a1
pyrus_communis	pycom08g17310 pycom15g34640 pycom15g34680
rosa_chinensis	RchiOBHm_Chr1g0364531 RchiOBHm_Chr4g0415781 RchiOBHm_Chr7g0232591 RchiOBHm_Chr7g0235521 RchiOBHm_Chr7g0235551 RchiOBHm_Chr7g0235561 RchiOBHm_Chr7g0235611 RchiOBHm_Chr7g0235721 RchiOBHm_Chr7g0235771
rosa_laevigata	RLG00000001141 RLG00000001147 RLG00000001148 RLG00000001151 RLG00000001152 RLG00000001321 RLG00000029743
rosa_multiflora	Rmu_co8320053.1_g000001 Rmu_co8402261.1_g000001 Rmu_co8447535.1_g000001 Rmu_sc0001912.1_g000001 Rmu_sc0001912.1_g000003 Rmu_sc0002617.1_g000016 Rmu_sc0002617.1_g000017 Rmu_sc0002892.1_g000022 Rmu_sc0002892.1_g000023 Rmu_sc0002892.1_g000041 Rmu_sc0002892.1_g000042 Rmu_sc0007994.1_g000006 Rmu_sc0010963.1_g000008 Rmu_sc0011151.1_g000005 Rmu_sc0012467.1_g000003 Rmu_ssc0000471.1_g000012 Rmu_ssc0000471.1_g000013
rosa_roxburghii	Rroxscaffold_3G00225680 Rroxscaffold_3G00225800 Rroxscaffold_3G00225870 Rroxscaffold_3G00228130 Rroxscaffold_6G00391050
rosa_rugosa	Rorug07G0275200 Rorug07G0291500.1 Rorug07G0292000 Rorug07G0292200 Rorug07G0292500 Rorug07G0295900
rosa_samantha	Rh7AG430000 Rh7AG446600 Rh7AG446800 Rh7AG447200 Rh7AG447300 Rh7AG447500 Rh7BG403500 Rh7BG418300 Rh7BG418400 Rh7BG418800 Rh7BG419000 Rh7BG419100 Rh7BG419300 Rh7BG419400 Rh7BG419500 Rh7BG419700 Rh7CG448700 Rh7CG466600 Rh7CG467000 Rh7CG467200 Rh7CG467300 Rh7CG467400 Rh7CG467500 Rh7CG468000 Rh7DG419700 Rh7DG435300 Rh7DG435400 Rh7DG435500 Rh7DG435600 Rh7DG436000 Rh7DG436500
rosa_wichuraiana	Rw0G011890 Rw7G035510 Rw7G037080 Rw7G037090 Rw7G037110 Rw7G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	391
AasI	GACNNNNNNGTC	1 cut(s)	329
AccI	GTMKAC	1 cut(s)	144
AciI	CCGC	3 cut(s)	28, 237, 294
AclWI	GGATC	1 cut(s)	249
AcoI	YGGCCR	1 cut(s)	345
AdeI	CACNNNGTG	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	70
AgeI	ACCGGT	1 cut(s)	77
AgsI	TTSAA	2 cut(s)	154, 193
AluBI	AGCT	2 cut(s)	97, 124
AluI	AGCT	2 cut(s)	97, 124
Alw26I	GTCTC	1 cut(s)	40
AlwI	GGATC	1 cut(s)	249
AoxI	GGCC	3 cut(s)	265, 269, 345
AsiGI	ACCGGT	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	88
AsuC2I	CCSGG	1 cut(s)	241
AsuHPI	GGTGA	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	88
BalI	TGGCCA	1 cut(s)	347
BarI	GAAGNNNNNNTAC	2 cut(s)	113, 145
BccI	CCATC	1 cut(s)	371
BceAI	ACGGC	1 cut(s)	307
BcnI	CCSGG	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	40
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
Bme1390I	CCNGG	1 cut(s)	241
Bme18I	GGWCC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	88
BmrFI	CCNGG	1 cut(s)	241
BoxI	GACNNNNGTC	1 cut(s)	52
BpuMI	CCSGG	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	348
BsaWI	WCCGGW	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse118I	RCCGGY	2 cut(s)	77, 267
BseDI	CCNNGG	1 cut(s)	348
BseGI	GGATG	3 cut(s)	21, 207, 367
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseYI	CCCAGC	1 cut(s)	64
Bsh1285I	CGRYCG	2 cut(s)	82, 333
BshFI	GGCC	3 cut(s)	267, 271, 347
BshTI	ACCGGT	1 cut(s)	77
BsiEI	CGRYCG	2 cut(s)	82, 333
BsiSI	CCGG	3 cut(s)	78, 240, 268
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmAI	GTCTC	1 cut(s)	40
BsnI	GGCC	3 cut(s)	267, 271, 347
Bsp143I	GATC	1 cut(s)	254
Bsp19I	CCATGG	1 cut(s)	348
BspACI	CCGC	3 cut(s)	28, 237, 294
BspANI	GGCC	3 cut(s)	267, 271, 347
BspPI	GGATC	1 cut(s)	249
BsrFI	RCCGGY	2 cut(s)	77, 267
BssAI	RCCGGY	2 cut(s)	77, 267
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	1 cut(s)	254
BssT1I	CCWWGG	1 cut(s)	348
Bst4CI	ACNGT	5 cut(s)	51, 73, 158, 181, 331
BstC8I	GCNNGC	1 cut(s)	269
BstDSI	CCRYGG	1 cut(s)	348
BstEII	GGTNACC	1 cut(s)	73
BstF5I	GGATG	3 cut(s)	21, 207, 367
BstKTI	GATC	1 cut(s)	257
BstMAI	GTCTC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	254
BstMCI	CGRYCG	2 cut(s)	82, 333
BstPAI	GACNNNNGTC	1 cut(s)	52
BstPI	GGTNACC	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	239
BstX2I	RGATCY	1 cut(s)	254
BstXI	CCANNNNNNTGG	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	254
BsuRI	GGCC	3 cut(s)	267, 271, 347
BtgI	CCRYGG	1 cut(s)	348
BtsCI	GGATG	3 cut(s)	21, 207, 367
BtsIMutI	CAGTG	1 cut(s)	186
Cac8I	GCNNGC	1 cut(s)	269
Cfr10I	RCCGGY	2 cut(s)	77, 267
Cfr13I	GGNCC	1 cut(s)	88
CspAI	ACCGGT	1 cut(s)	77
CviAII	CATG	4 cut(s)	43, 92, 280, 349
CviJI	RGCY	9 cut(s)	97, 116, 124, 175, 199, 267, 271, 347, 353
CviKI_1	RGCY	9 cut(s)	97, 116, 124, 175, 199, 267, 271, 347, 353
DpnI	GATC	1 cut(s)	256
DpnII	GATC	1 cut(s)	254
DraIII	CACNNNGTG	1 cut(s)	320
DrdI	GACNNNNNNGTC	1 cut(s)	329
DseDI	GACNNNNNNGTC	1 cut(s)	329
EaeI	YGGCCR	1 cut(s)	345
Eco130I	CCWWGG	1 cut(s)	348
Eco47I	GGWCC	1 cut(s)	88
Eco91I	GGTNACC	1 cut(s)	73
EcoO65I	GGTNACC	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	4 cut(s)	46, 95, 283, 352
FaiI	YATR	8 cut(s)	44, 93, 119, 162, 203, 281, 350, 391
FatI	CATG	4 cut(s)	42, 91, 279, 348
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	1 cut(s)	237
FokI	GGATG	3 cut(s)	8, 194, 374
FseI	GGCCGGCC	1 cut(s)	271
Fsp4HI	GCNGC	1 cut(s)	237
GluI	GCNGC	1 cut(s)	237
GsaI	CCCAGC	1 cut(s)	68
HaeIII	GGCC	3 cut(s)	267, 271, 347
HapII	CCGG	3 cut(s)	78, 240, 268
Hin1II	CATG	4 cut(s)	46, 95, 283, 352
HinfI	GANTC	2 cut(s)	246, 365
HpaII	CCGG	3 cut(s)	78, 240, 268
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	2 cut(s)	109, 145
Hpy188I	TCNGA	3 cut(s)	84, 251, 259
Hpy8I	GTNNAC	2 cut(s)	109, 145
Hpy99I	CGWCG	2 cut(s)	62, 293
HpyAV	CCTTC	1 cut(s)	79
HpyCH4III	ACNGT	5 cut(s)	51, 73, 158, 181, 331
HpyCH4IV	ACGT	2 cut(s)	105, 316
HpyCH4V	TGCA	1 cut(s)	164
HpySE526I	ACGT	2 cut(s)	105, 316
Hsp92II	CATG	4 cut(s)	46, 95, 283, 352
KroI	GCCGGC	1 cut(s)	267
KroNI	GCCGGC	1 cut(s)	269
Kzo9I	GATC	1 cut(s)	254
LpnPI	CCDG	6 cut(s)	52, 78, 91, 249, 253, 281
MaeII	ACGT	2 cut(s)	105, 316
MaeIII	GTNAC	3 cut(s)	73, 284, 320
MalI	GATC	1 cut(s)	256
MboI	GATC	1 cut(s)	254
MboII	GAAGA	2 cut(s)	205, 264
MflI	RGATCY	1 cut(s)	254
MlsI	TGGCCA	1 cut(s)	347
MluCI	AATT	2 cut(s)	34, 303
MluNI	TGGCCA	1 cut(s)	347
MmeI	TCCRAC	1 cut(s)	62
MnlI	CCTC	4 cut(s)	41, 163, 304, 352
Mox20I	TGGCCA	1 cut(s)	347
MroNI	GCCGGC	1 cut(s)	267
MscI	TGGCCA	1 cut(s)	347
MslI	CAYNNNNRTG	1 cut(s)	353
Msp20I	TGGCCA	1 cut(s)	347
MspI	CCGG	3 cut(s)	78, 240, 268
MspR9I	CCNGG	1 cut(s)	241
NaeI	GCCGGC	1 cut(s)	269
NciI	CCSGG	1 cut(s)	241
NcoI	CCATGG	1 cut(s)	348
NdeII	GATC	1 cut(s)	254
NgoMIV	GCCGGC	1 cut(s)	267
NlaIII	CATG	4 cut(s)	46, 95, 283, 352
NmuCI	GTSAC	2 cut(s)	73, 320
PcsI	WCGNNNNNNNCGW	1 cut(s)	330
PdiI	GCCGGC	1 cut(s)	269
PfeI	GAWTC	2 cut(s)	246, 365
PinAI	ACCGGT	1 cut(s)	77
PkrI	GCNGC	1 cut(s)	238
PshAI	GACNNNNGTC	1 cut(s)	52
PsiI	TTATAA	1 cut(s)	391
PspEI	GGTNACC	1 cut(s)	73
PspFI	CCCAGC	1 cut(s)	64
PspPI	GGNCC	1 cut(s)	88
PsuI	RGATCY	1 cut(s)	254
RigI	GGCCGGCC	1 cut(s)	271
RseI	CAYNNNNRTG	1 cut(s)	353
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	1 cut(s)	254
Sau96I	GGNCC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	241
SetI	ASST	5 cut(s)	90, 99, 108, 126, 319
SinI	GGWCC	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	353
Sse9I	AATT	2 cut(s)	34, 303
SsiI	CCGC	3 cut(s)	28, 237, 294
StyD4I	CCNGG	1 cut(s)	239
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	5 cut(s)	51, 73, 158, 181, 331
TaiI	ACGT	2 cut(s)	108, 319
TaqI	TCGA	2 cut(s)	168, 333
TasI	AATT	2 cut(s)	34, 303
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	2 cut(s)	246, 365
TscAI	CASTG	1 cut(s)	186
TseFI	GTSAC	2 cut(s)	73, 320
Tsp45I	GTSAC	2 cut(s)	73, 320
TspDTI	ATGAA	3 cut(s)	134, 265, 351
TspGWI	ACGGA	1 cut(s)	46
TspRI	CASTG	1 cut(s)	186
VpaK11BI	GGWCC	1 cut(s)	88
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XmiI	GTMKAC	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.