Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0000453

Physical Location & Seq

Genomic Coordinates Reverse (-)

17460816 .. 17462824

Gene Structure 2009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g17310.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGTGTCATCAACCAGCTTGAGGCTGTCAACGGTTGTTCCAGCTACAAGGATAGGTGATGAAAACAGGGTCCATGAGGTCACCAACATAGACTTGGCCATGAAGCTTCACTATATCAAAGGGGTCTACTTCTTCAAGAATGAGGCAGTTGAGGGGCTTACAATTTATGACTTGAAGAAACCTATGTTCCAGCTCCTGCAGCTCTACTTCACTGCCTCCAGGAGGATCCGGAGATCCGAAACTGGAATGCCGTTCATCAAGTGTAACGACAGCGGTGTAAGAATTGTAGAAGCGCATTATGAAGAAACGGTTGATGAATGGTCTGCCAGGGCCATGGATGACTCTTCTCTCTTTGATGGTCTTGCTTATAATCAAGCCCTTGGTCCTGATCTTGGTTACTCTCCTTTGGTCTTTTTACAGTTAATACCTATATATATACTTATCATCGCAGGTCAAGTGCCACGGAAGCTCCTCCACGTGCCACCTCCCGGAAAACCTGAATCCCCATCACTTTCTTCAGTACCCGAAACACCTTTTTCTGTGAAAAGGGTATATCCAGTTGGTGATTTCTGGGTGACACCCAACAAGTACAGGACGAGAAAACACATTTTTCATGTTTTTGCTGAGAAGCTTGATCATTTGGTCTCCAACATTTCTTGTCCTCCAAGCAACCAATCAGCCAAAGTCTCCTCGGCTTTTGAAGTTCTCTCTGCTATTATATGGAAATCCTTGTCCAAGATTATGGAAGGCGCAGAGCAGATAAAAGGGGTGACAATTTGTACAAAAAATGTGCATAAAAGGGAATTTGGAGTTCTGAGTAATGACATAGTGGCAGAAGAGAATGGTGCAATTGAGGAGACGGCAGGGAGGGAGGAGGGCGGGAGTAATTCGGACTTCATAGCTTATGGAACAAAGCTTACATTCGTGAACTTGGAAGAGGCAGAGATTTATGGGCTTGAATTGAAGGGACAAAAACCAGTTTATGCGAGTTATGGTATTAGACTATTAGTGGGGTTGGTGATGAAGGGCTGGTTTTGGTGCTTCCGGCAAGTACTAATAATGTCGGTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009555 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016053 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048229 GO:0048856 GO:0071704 GO:0072330 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

358

Amino Acids

40.05

Weight (kDa)

6.73

Isoelectric Point (pI)

44.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24510
fragaria_vesca	FvH4_5g34840 FvH4_5g34850
malus_domestica	MD08G1199200.v1.1 MD08G1199300.v1.1 MD15G1386300.v1.1 MD15G1386800.v1.1
prunus_persica	Prupe.1G533000_v2.0.a1
pyrus_communis	pycom08g17310 pycom15g34640 pycom15g34680
rosa_chinensis	RchiOBHm_Chr1g0364531 RchiOBHm_Chr4g0415781 RchiOBHm_Chr7g0232591 RchiOBHm_Chr7g0235521 RchiOBHm_Chr7g0235551 RchiOBHm_Chr7g0235561 RchiOBHm_Chr7g0235611 RchiOBHm_Chr7g0235721 RchiOBHm_Chr7g0235771
rosa_laevigata	RLG00000001141 RLG00000001147 RLG00000001148 RLG00000001151 RLG00000001152 RLG00000001321 RLG00000029743
rosa_multiflora	Rmu_co8320053.1_g000001 Rmu_co8402261.1_g000001 Rmu_co8447535.1_g000001 Rmu_sc0001912.1_g000001 Rmu_sc0001912.1_g000003 Rmu_sc0002617.1_g000016 Rmu_sc0002617.1_g000017 Rmu_sc0002892.1_g000022 Rmu_sc0002892.1_g000023 Rmu_sc0002892.1_g000041 Rmu_sc0002892.1_g000042 Rmu_sc0007994.1_g000006 Rmu_sc0010963.1_g000008 Rmu_sc0011151.1_g000005 Rmu_sc0012467.1_g000003 Rmu_ssc0000471.1_g000012 Rmu_ssc0000471.1_g000013
rosa_roxburghii	Rroxscaffold_3G00225680 Rroxscaffold_3G00225800 Rroxscaffold_3G00225870 Rroxscaffold_3G00228130 Rroxscaffold_6G00391050
rosa_rugosa	Rorug07G0275200 Rorug07G0291500.1 Rorug07G0292000 Rorug07G0292200 Rorug07G0292500 Rorug07G0295900
rosa_samantha	Rh7AG430000 Rh7AG446600 Rh7AG446800 Rh7AG447200 Rh7AG447300 Rh7AG447500 Rh7BG403500 Rh7BG418300 Rh7BG418400 Rh7BG418800 Rh7BG419000 Rh7BG419100 Rh7BG419300 Rh7BG419400 Rh7BG419500 Rh7BG419700 Rh7CG448700 Rh7CG466600 Rh7CG467000 Rh7CG467200 Rh7CG467300 Rh7CG467400 Rh7CG467500 Rh7CG468000 Rh7DG419700 Rh7DG435300 Rh7DG435400 Rh7DG435500 Rh7DG435600 Rh7DG436000 Rh7DG436500
rosa_wichuraiana	Rw0G011890 Rw7G035510 Rw7G037080 Rw7G037090 Rw7G037110 Rw7G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	369
Acc36I	ACCTGC	1 cut(s)	440
AccI	GTMKAC	1 cut(s)	126
AccIII	TCCGGA	1 cut(s)	228
AciI	CCGC	2 cut(s)	273, 879
AclWI	GGATC	3 cut(s)	220, 228, 233
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	803
AcuI	CTGAAG	1 cut(s)	501
AcvI	CACGTG	1 cut(s)	478
AfaI	GTAC	4 cut(s)	522, 590, 781, 1053
AfiI	CCNNNNNNNGG	4 cut(s)	21, 222, 392, 488
AgsI	TTSAA	5 cut(s)	136, 175, 701, 959, 964
AjnI	CCWGG	2 cut(s)	218, 326
AluBI	AGCT	9 cut(s)	18, 44, 106, 193, 202, 469, 631, 902, 916
AluI	AGCT	9 cut(s)	18, 44, 106, 193, 202, 469, 631, 902, 916
Alw26I	GTCTC	3 cut(s)	649, 691, 851
AlwI	GGATC	3 cut(s)	220, 228, 233
AlwNI	CAGNNNCTG	1 cut(s)	196
Aor13HI	TCCGGA	1 cut(s)	228
AoxI	GGCC	2 cut(s)	96, 330
ApeKI	GCWGC	1 cut(s)	199
ApoI	RAATTY	1 cut(s)	803
AspLEI	GCGC	2 cut(s)	295, 752
AspS9I	GGNCC	3 cut(s)	70, 330, 383
AsuC2I	CCSGG	1 cut(s)	489
AsuHPI	GGTGA	6 cut(s)	68, 73, 575, 586, 781, 1030
AvaII	GGWCC	2 cut(s)	70, 383
BalI	TGGCCA	1 cut(s)	98
BamHI	GGATCC	1 cut(s)	225
BbrPI	CACGTG	1 cut(s)	478
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	2 cut(s)	350, 514
BceAI	ACGGC	2 cut(s)	235, 876
BciT130I	CCWGG	2 cut(s)	220, 328
BclI	TGATCA	1 cut(s)	634
BcnI	CCSGG	1 cut(s)	489
BcoDI	GTCTC	3 cut(s)	649, 691, 851
BfmI	CTRYAG	1 cut(s)	197
BfuAI	ACCTGC	1 cut(s)	440
BisI	GCNGC	1 cut(s)	200
BlsI	GCNGC	1 cut(s)	201
BmcAI	AGTACT	1 cut(s)	1053
Bme1390I	CCNGG	3 cut(s)	220, 328, 489
Bme18I	GGWCC	2 cut(s)	70, 383
BmgT120I	GGNCC	3 cut(s)	70, 330, 383
BmiI	GGNNCC	2 cut(s)	71, 227
BmrFI	CCNGG	3 cut(s)	220, 328, 489
BpmI	CTGGAG	1 cut(s)	202
BpuEI	CTTGAG	1 cut(s)	40
BpuMI	CCSGG	1 cut(s)	489
BsaAI	YACGTR	1 cut(s)	478
BsaI	GGTCTC	1 cut(s)	649
BsaJI	CCNNGG	5 cut(s)	327, 333, 379, 461, 690
BsaWI	WCCGGW	1 cut(s)	228
BsaXI	ACNNNNNCTCC	2 cut(s)	453, 483
Bsc4I	CCNNNNNNNGG	4 cut(s)	21, 222, 392, 488
Bse1I	ACTGG	3 cut(s)	247, 557, 977
BseAI	TCCGGA	1 cut(s)	228
BseBI	CCWGG	2 cut(s)	220, 328
BseDI	CCNNGG	5 cut(s)	327, 333, 379, 461, 690
BseGI	GGATG	1 cut(s)	343
BseLI	CCNNNNNNNGG	4 cut(s)	21, 222, 392, 488
BseMII	CTCAG	2 cut(s)	615, 806
BseNI	ACTGG	3 cut(s)	247, 557, 977
BseRI	GAGGAG	4 cut(s)	461, 679, 869, 887
BseXI	GCAGC	1 cut(s)	211
Bsh1285I	CGRYCG	1 cut(s)	1068
BshFI	GGCC	2 cut(s)	98, 332
BsiEI	CGRYCG	1 cut(s)	1068
BsiSI	CCGG	3 cut(s)	229, 489, 1045
BslFI	GGGAC	1 cut(s)	981
BslI	CCNNNNNNNGG	4 cut(s)	21, 222, 392, 488
BsmAI	GTCTC	3 cut(s)	649, 691, 851
BsmBI	CGTCTC	1 cut(s)	851
BsmFI	GGGAC	1 cut(s)	981
BsmI	GAATGC	1 cut(s)	252
BsnI	GGCC	2 cut(s)	98, 332
Bso31I	GGTCTC	1 cut(s)	649
Bsp13I	TCCGGA	1 cut(s)	228
Bsp1407I	TGTACA	1 cut(s)	779
Bsp143I	GATC	4 cut(s)	225, 233, 388, 634
Bsp19I	CCATGG	1 cut(s)	333
BspACI	CCGC	2 cut(s)	273, 879
BspANI	GGCC	2 cut(s)	98, 332
BspCNI	CTCAG	2 cut(s)	616, 807
BspEI	TCCGGA	1 cut(s)	228
BspLI	GGNNCC	2 cut(s)	71, 227
BspMAI	CTGCAG	1 cut(s)	201
BspMI	ACCTGC	1 cut(s)	440
BspPI	GGATC	3 cut(s)	220, 228, 233
BspTNI	GGTCTC	1 cut(s)	649
BsrGI	TGTACA	1 cut(s)	779
BsrI	ACTGG	3 cut(s)	247, 557, 977
BssECI	CCNNGG	5 cut(s)	327, 333, 379, 461, 690
BssMI	GATC	4 cut(s)	225, 233, 388, 634
BssT1I	CCWWGG	2 cut(s)	333, 379
Bst2UI	CCWGG	2 cut(s)	220, 328
Bst4CI	ACNGT	3 cut(s)	34, 310, 420
Bst6I	CTCTTC	3 cut(s)	349, 831, 930
BstAUI	TGTACA	1 cut(s)	779
BstBAI	YACGTR	1 cut(s)	478
BstDEI	CTNAG	2 cut(s)	624, 815
BstDSI	CCRYGG	2 cut(s)	333, 461
BstEII	GGTNACC	1 cut(s)	79
BstENI	CCTNNNNNAGG	1 cut(s)	220
BstF5I	GGATG	1 cut(s)	343
BstHHI	GCGC	2 cut(s)	295, 752
BstKTI	GATC	4 cut(s)	228, 236, 391, 637
BstMAI	GTCTC	3 cut(s)	649, 691, 851
BstMBI	GATC	4 cut(s)	225, 233, 388, 634
BstMCI	CGRYCG	1 cut(s)	1068
BstMWI	GCNNNNNNNGC	2 cut(s)	199, 466
BstNI	CCWGG	2 cut(s)	220, 328
BstPI	GGTNACC	1 cut(s)	79
BstSCI	CCNGG	3 cut(s)	218, 326, 487
BstSFI	CTRYAG	1 cut(s)	197
BstV1I	GCAGC	1 cut(s)	211
BstX2I	RGATCY	2 cut(s)	225, 233
BstXI	CCANNNNNNTGG	2 cut(s)	334, 742
BstYI	RGATCY	2 cut(s)	225, 233
BsuRI	GGCC	2 cut(s)	98, 332
BtgI	CCRYGG	2 cut(s)	333, 461
BtgZI	GCGATG	1 cut(s)	430
BtsCI	GGATG	1 cut(s)	343
BtsI	GCAGTG	1 cut(s)	210
BtsIMutI	CAGTG	1 cut(s)	210
BveI	ACCTGC	1 cut(s)	440
CaiI	CAGNNNCTG	1 cut(s)	196
CfoI	GCGC	2 cut(s)	295, 752
Cfr13I	GGNCC	3 cut(s)	70, 330, 383
Csp6I	GTAC	4 cut(s)	521, 589, 780, 1052
CviAII	CATG	4 cut(s)	74, 100, 334, 614
CviQI	GTAC	4 cut(s)	521, 589, 780, 1052
DdeI	CTNAG	2 cut(s)	624, 815
DpnI	GATC	4 cut(s)	227, 235, 390, 636
DpnII	GATC	4 cut(s)	225, 233, 388, 634
EaeI	YGGCCR	1 cut(s)	96
Eam1104I	CTCTTC	3 cut(s)	349, 831, 930
EarI	CTCTTC	3 cut(s)	349, 831, 930
Eco130I	CCWWGG	2 cut(s)	333, 379
Eco31I	GGTCTC	1 cut(s)	649
Eco47I	GGWCC	2 cut(s)	70, 383
Eco57I	CTGAAG	1 cut(s)	501
Eco72I	CACGTG	1 cut(s)	478
Eco91I	GGTNACC	1 cut(s)	79
EcoNI	CCTNNNNNAGG	1 cut(s)	220
EcoO65I	GGTNACC	1 cut(s)	79
EcoRII	CCWGG	2 cut(s)	218, 326
EcoT14I	CCWWGG	2 cut(s)	333, 379
ErhI	CCWWGG	2 cut(s)	333, 379
Esp3I	CGTCTC	1 cut(s)	851
FaeI	CATG	4 cut(s)	77, 103, 337, 617
FaqI	GGGAC	1 cut(s)	981
FatI	CATG	4 cut(s)	73, 99, 333, 613
FauI	CCCGC	1 cut(s)	872
FbaI	TGATCA	1 cut(s)	634
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	200
FokI	GGATG	1 cut(s)	350
Fsp4HI	GCNGC	1 cut(s)	200
GlaI	GCGC	2 cut(s)	294, 751
GluI	GCNGC	1 cut(s)	200
GsuI	CTGGAG	1 cut(s)	202
HaeIII	GGCC	2 cut(s)	98, 332
HapII	CCGG	3 cut(s)	229, 489, 1045
HhaI	GCGC	2 cut(s)	295, 752
Hin1II	CATG	4 cut(s)	77, 103, 337, 617
Hin6I	GCGC	2 cut(s)	293, 750
HinP1I	GCGC	2 cut(s)	293, 750
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HindIII	AAGCTT	3 cut(s)	104, 629, 914
HinfI	GANTC	2 cut(s)	341, 500
HpaII	CCGG	3 cut(s)	229, 489, 1045
HphI	GGTGA	6 cut(s)	68, 73, 575, 586, 781, 1030
Hpy166II	GTNNAC	3 cut(s)	30, 127, 928
Hpy188I	TCNGA	3 cut(s)	238, 816, 892
Hpy188III	TCNNGA	4 cut(s)	136, 229, 386, 925
Hpy8I	GTNNAC	3 cut(s)	30, 127, 928
HpyAV	CCTTC	3 cut(s)	740, 958, 1018
HpyCH4III	ACNGT	3 cut(s)	34, 310, 420
HpyCH4IV	ACGT	1 cut(s)	477
HpyCH4V	TGCA	3 cut(s)	199, 793, 848
HpyF10VI	GCNNNNNNNGC	2 cut(s)	199, 466
HpyF3I	CTNAG	2 cut(s)	624, 815
HpySE526I	ACGT	1 cut(s)	477
Hsp92II	CATG	4 cut(s)	77, 103, 337, 617
HspAI	GCGC	2 cut(s)	293, 750
Kpn2I	TCCGGA	1 cut(s)	228
Ksp22I	TGATCA	1 cut(s)	634
Kzo9I	GATC	4 cut(s)	225, 233, 388, 634
LmnI	GCTCC	2 cut(s)	198, 474
Lsp1109I	GCAGC	1 cut(s)	211
MaeII	ACGT	1 cut(s)	477
MaeIII	GTNAC	5 cut(s)	79, 263, 395, 574, 769
MalI	GATC	4 cut(s)	227, 235, 390, 636
MboI	GATC	4 cut(s)	225, 233, 388, 634
MboII	GAAGA	7 cut(s)	124, 187, 314, 336, 507, 848, 947
MfeI	CAATTG	1 cut(s)	849
MflI	RGATCY	2 cut(s)	225, 233
MlsI	TGGCCA	1 cut(s)	98
MluCI	AATT	7 cut(s)	162, 282, 774, 803, 849, 886, 959
MluNI	TGGCCA	1 cut(s)	98
MlyI	GAGTC	1 cut(s)	335
MmeI	TCCRAC	1 cut(s)	672
Mox20I	TGGCCA	1 cut(s)	98
MroI	TCCGGA	1 cut(s)	228
MscI	TGGCCA	1 cut(s)	98
MseI	TTAA	1 cut(s)	422
Msp20I	TGGCCA	1 cut(s)	98
MspA1I	CMGCKG	1 cut(s)	273
MspI	CCGG	3 cut(s)	229, 489, 1045
MspR9I	CCNGG	3 cut(s)	220, 328, 489
MunI	CAATTG	1 cut(s)	849
Mva1269I	GAATGC	1 cut(s)	252
MvaI	CCWGG	2 cut(s)	220, 328
MwoI	GCNNNNNNNGC	2 cut(s)	199, 466
NciI	CCSGG	1 cut(s)	489
NcoI	CCATGG	1 cut(s)	333
NdeII	GATC	4 cut(s)	225, 233, 388, 634
NlaIII	CATG	4 cut(s)	77, 103, 337, 617
NlaIV	GGNNCC	2 cut(s)	71, 227
NmeAIII	GCCGAG	1 cut(s)	671
NmuCI	GTSAC	3 cut(s)	79, 574, 769
PctI	GAATGC	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	500
PfoI	TCCNGGA	2 cut(s)	218, 487
PkrI	GCNGC	1 cut(s)	201
PleI	GAGTC	1 cut(s)	335
PmaCI	CACGTG	1 cut(s)	478
PmlI	CACGTG	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	335
Ppu21I	YACGTR	1 cut(s)	478
PsiI	TTATAA	1 cut(s)	369
Psp6I	CCWGG	2 cut(s)	218, 326
PspCI	CACGTG	1 cut(s)	478
PspEI	GGTNACC	1 cut(s)	79
PspGI	CCWGG	2 cut(s)	218, 326
PspN4I	GGNNCC	2 cut(s)	71, 227
PspPI	GGNCC	3 cut(s)	70, 330, 383
PsrI	GAACNNNNNNTAC	2 cut(s)	901, 933
PstI	CTGCAG	1 cut(s)	201
PstNI	CAGNNNCTG	1 cut(s)	196
PsuI	RGATCY	2 cut(s)	225, 233
RsaI	GTAC	4 cut(s)	522, 590, 781, 1053
RsaNI	GTAC	4 cut(s)	521, 589, 780, 1052
SaqAI	TTAA	1 cut(s)	422
SatI	GCNGC	1 cut(s)	200
Sau3AI	GATC	4 cut(s)	225, 233, 388, 634
Sau96I	GGNCC	3 cut(s)	70, 330, 383
ScaI	AGTACT	1 cut(s)	1053
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	3 cut(s)	220, 328, 489
SfcI	CTRYAG	1 cut(s)	197
SinI	GGWCC	2 cut(s)	70, 383
SmlI	CTYRAG	1 cut(s)	19
SmoI	CTYRAG	1 cut(s)	19
Sse9I	AATT	7 cut(s)	162, 282, 774, 803, 849, 886, 959
SsiI	CCGC	2 cut(s)	273, 879
StyD4I	CCNGG	3 cut(s)	218, 326, 487
StyI	CCWWGG	2 cut(s)	333, 379
TaaI	ACNGT	3 cut(s)	34, 310, 420
TaiI	ACGT	1 cut(s)	480
TaqI	TCGA	1 cut(s)	1068
TaqII	GACCGA	1 cut(s)	1054
TasI	AATT	7 cut(s)	162, 282, 774, 803, 849, 886, 959
TatI	WGTACW	3 cut(s)	588, 779, 1051
TfiI	GAWTC	1 cut(s)	500
Tru1I	TTAA	1 cut(s)	422
Tru9I	TTAA	1 cut(s)	422
TscAI	CASTG	1 cut(s)	217
TseFI	GTSAC	3 cut(s)	79, 574, 769
TseI	GCWGC	1 cut(s)	199
Tsp45I	GTSAC	3 cut(s)	79, 574, 769
TspDTI	ATGAA	8 cut(s)	75, 116, 244, 315, 330, 602, 886, 1037
TspGWI	ACGGA	1 cut(s)	478
TspRI	CASTG	1 cut(s)	217
VpaK11BI	GGWCC	2 cut(s)	70, 383
XagI	CCTNNNNNAGG	1 cut(s)	220
XapI	RAATTY	1 cut(s)	803
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XmiI	GTMKAC	1 cut(s)	126
ZrmI	AGTACT	1 cut(s)	1053

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.