Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000453

Physical Location & Seq

Genomic Coordinates Reverse (-)

28584033 .. 28584760

Gene Structure 728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0292000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGTCTTACAATCCGGGGAAGCATTGGATATTAACTATCTTATGGGAGGGTGAAATCTACATCTTGGATCCGTTGCCAAAACCAGTCCATTATCAAGTTTGGGAGACCTCGCTGATAAATGTTGTGAAAACCTTCAATGCTGAAACTGGTAGGGTCAACAAACTGCCTAAAGTGAAATCGCTTCCGGGCGTACCTAAACAACCGGGTGGAGTTGAGTGTGGCTATTATGTTATGCGATACATGAAAGAGATTATAGAGGATGAGACACTTTCATTTTCTACCAAGTGGGCGGTAAAGACGCGGAAATCATATAGCCAAAATCAAATCGACGAGGTGCGCATTGAAGTGGCTGATTATTTACAGGGTTTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009555 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016053 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048229 GO:0048856 GO:0071704 GO:0072330 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

124

Amino Acids

14.4

Weight (kDa)

7.79

Isoelectric Point (pI)

52.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	6 - 108	2.8e-08	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24510
fragaria_vesca	FvH4_5g34840 FvH4_5g34850
malus_domestica	MD08G1199200.v1.1 MD08G1199300.v1.1 MD15G1386300.v1.1 MD15G1386800.v1.1
prunus_persica	Prupe.1G533000_v2.0.a1
pyrus_communis	pycom08g17310 pycom15g34640 pycom15g34680
rosa_chinensis	RchiOBHm_Chr1g0364531 RchiOBHm_Chr4g0415781 RchiOBHm_Chr7g0232591 RchiOBHm_Chr7g0235521 RchiOBHm_Chr7g0235551 RchiOBHm_Chr7g0235561 RchiOBHm_Chr7g0235611 RchiOBHm_Chr7g0235721 RchiOBHm_Chr7g0235771
rosa_laevigata	RLG00000001141 RLG00000001147 RLG00000001148 RLG00000001151 RLG00000001152 RLG00000001321 RLG00000029743
rosa_multiflora	Rmu_co8320053.1_g000001 Rmu_co8402261.1_g000001 Rmu_co8447535.1_g000001 Rmu_sc0001912.1_g000001 Rmu_sc0001912.1_g000003 Rmu_sc0002617.1_g000016 Rmu_sc0002617.1_g000017 Rmu_sc0002892.1_g000022 Rmu_sc0002892.1_g000023 Rmu_sc0002892.1_g000041 Rmu_sc0002892.1_g000042 Rmu_sc0007994.1_g000006 Rmu_sc0010963.1_g000008 Rmu_sc0011151.1_g000005 Rmu_sc0012467.1_g000003 Rmu_ssc0000471.1_g000012 Rmu_ssc0000471.1_g000013
rosa_roxburghii	Rroxscaffold_3G00225680 Rroxscaffold_3G00225800 Rroxscaffold_3G00225870 Rroxscaffold_3G00228130 Rroxscaffold_6G00391050
rosa_rugosa	Rorug07G0275200 Rorug07G0291500.1 Rorug07G0292000 Rorug07G0292200 Rorug07G0292500 Rorug07G0295900
rosa_samantha	Rh7AG430000 Rh7AG446600 Rh7AG446800 Rh7AG447200 Rh7AG447300 Rh7AG447500 Rh7BG403500 Rh7BG418300 Rh7BG418400 Rh7BG418800 Rh7BG419000 Rh7BG419100 Rh7BG419300 Rh7BG419400 Rh7BG419500 Rh7BG419700 Rh7CG448700 Rh7CG466600 Rh7CG467000 Rh7CG467200 Rh7CG467300 Rh7CG467400 Rh7CG467500 Rh7CG468000 Rh7DG419700 Rh7DG435300 Rh7DG435400 Rh7DG435500 Rh7DG435600 Rh7DG436000 Rh7DG436500
rosa_wichuraiana	Rw0G011890 Rw7G035510 Rw7G037080 Rw7G037090 Rw7G037110 Rw7G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	338
AccII	CGCG	1 cut(s)	301
AciI	CCGC	2 cut(s)	290, 301
AclWI	GGATC	2 cut(s)	62, 75
AfaI	GTAC	1 cut(s)	192
AgsI	TTSAA	2 cut(s)	136, 344
Alw26I	GTCTC	2 cut(s)	98, 257
AlwI	GGATC	2 cut(s)	62, 75
Asp700I	GAANNNNTTC	1 cut(s)	131
AspLEI	GCGC	1 cut(s)	339
AsuC2I	CCSGG	3 cut(s)	15, 186, 204
AsuHPI	GGTGA	1 cut(s)	62
BamHI	GGATCC	1 cut(s)	67
BcnI	CCSGG	3 cut(s)	15, 186, 204
BcoDI	GTCTC	2 cut(s)	98, 257
Bme1390I	CCNGG	3 cut(s)	15, 186, 204
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	3 cut(s)	15, 186, 204
BpuMI	CCSGG	3 cut(s)	15, 186, 204
BsaI	GGTCTC	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	14
Bse1I	ACTGG	2 cut(s)	83, 151
BseDI	CCNNGG	1 cut(s)	14
BseGI	GGATG	1 cut(s)	265
BseNI	ACTGG	2 cut(s)	83, 151
Bsh1236I	CGCG	1 cut(s)	301
BsiSI	CCGG	3 cut(s)	14, 185, 203
BsmAI	GTCTC	2 cut(s)	98, 257
Bso31I	GGTCTC	1 cut(s)	98
Bsp143I	GATC	1 cut(s)	67
BspACI	CCGC	2 cut(s)	290, 301
BspFNI	CGCG	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	69
BspPI	GGATC	2 cut(s)	62, 75
BspTNI	GGTCTC	1 cut(s)	98
BsrI	ACTGG	2 cut(s)	83, 151
BssECI	CCNNGG	1 cut(s)	14
BssMI	GATC	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	265
BstFNI	CGCG	1 cut(s)	301
BstHHI	GCGC	1 cut(s)	339
BstKTI	GATC	1 cut(s)	70
BstMAI	GTCTC	2 cut(s)	98, 257
BstMBI	GATC	1 cut(s)	67
BstSCI	CCNGG	3 cut(s)	13, 184, 202
BstUI	CGCG	1 cut(s)	301
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	265
CfoI	GCGC	1 cut(s)	339
CseI	GACGC	1 cut(s)	307
Csp6I	GTAC	1 cut(s)	191
CviAII	CATG	2 cut(s)	241, 370
CviJI	RGCY	3 cut(s)	222, 315, 350
CviKI_1	RGCY	3 cut(s)	222, 315, 350
CviQI	GTAC	1 cut(s)	191
DpnI	GATC	1 cut(s)	69
DpnII	GATC	1 cut(s)	67
Eco31I	GGTCTC	1 cut(s)	98
FaeI	CATG	2 cut(s)	244, 373
FaiI	YATR	8 cut(s)	43, 228, 233, 242, 254, 310, 312, 371
FatI	CATG	2 cut(s)	240, 369
FokI	GGATG	1 cut(s)	272
FspAI	RTGCGCAY	1 cut(s)	338
FspI	TGCGCA	1 cut(s)	338
GlaI	GCGC	1 cut(s)	338
HapII	CCGG	3 cut(s)	14, 185, 203
HgaI	GACGC	1 cut(s)	307
HhaI	GCGC	1 cut(s)	339
Hin1II	CATG	2 cut(s)	244, 373
Hin6I	GCGC	1 cut(s)	337
HinP1I	GCGC	1 cut(s)	337
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HpaII	CCGG	3 cut(s)	14, 185, 203
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	1 cut(s)	157
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	1 cut(s)	332
HpyAV	CCTTC	1 cut(s)	142
Hsp92II	CATG	2 cut(s)	244, 373
HspAI	GCGC	1 cut(s)	337
Kzo9I	GATC	1 cut(s)	67
LpnPI	CCDG	6 cut(s)	27, 96, 132, 198, 216, 347
MalI	GATC	1 cut(s)	69
MboI	GATC	1 cut(s)	67
MflI	RGATCY	1 cut(s)	67
MnlI	CCTC	4 cut(s)	40, 118, 250, 325
MroXI	GAANNNNTTC	1 cut(s)	131
MseI	TTAA	1 cut(s)	32
MslI	CAYNNNNRTG	1 cut(s)	344
MspI	CCGG	3 cut(s)	14, 185, 203
MspR9I	CCNGG	3 cut(s)	15, 186, 204
MvnI	CGCG	1 cut(s)	301
NciI	CCSGG	3 cut(s)	15, 186, 204
NdeII	GATC	1 cut(s)	67
NlaIII	CATG	2 cut(s)	244, 373
NlaIV	GGNNCC	1 cut(s)	69
NsbI	TGCGCA	1 cut(s)	338
PdmI	GAANNNNTTC	1 cut(s)	131
PspN4I	GGNNCC	1 cut(s)	69
PsuI	RGATCY	1 cut(s)	67
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
RseI	CAYNNNNRTG	1 cut(s)	344
SaqAI	TTAA	1 cut(s)	32
Sau3AI	GATC	1 cut(s)	67
ScrFI	CCNGG	3 cut(s)	15, 186, 204
SetI	ASST	4 cut(s)	110, 134, 196, 336
SmiMI	CAYNNNNRTG	1 cut(s)	344
SsiI	CCGC	2 cut(s)	290, 301
StyD4I	CCNGG	3 cut(s)	13, 184, 202
TaqI	TCGA	1 cut(s)	327
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TspDTI	ATGAA	3 cut(s)	257, 261, 358
TspGWI	ACGGA	1 cut(s)	60
XmnI	GAANNNNTTC	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.