Rroxscaffold_3G00228130

Transferase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
12450751 .. 12453452
2702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00228130.1

Sequence Viewer

Length: 777 bp
ATGGCAGGTCTTGTGCCACGCAAGTCTCTGCATGAACCAGACCGACCTGCAAAATCTGAGCCCCTACTTTCAGTACTTCCTAATCTAATACCAGATTCCGTGAAAAGGGTTGATTCGGTTGGCGATTTATGGTTCACACCCAACAACTGCAAGATGAAGACACATACTTTTCATGTTCAGGCAGAGAAAATTAACCATTTTCTCTCAAACCAAAGATCCAAGGTCTCAGCTTTTGAAGTACTCTCTGCAATCATATGGAGAGCTCTGTCCAAGATTAAGGAAGACCCAGAAGGGACAAGGATGGTGACACTTTGTACAAACAAATCCCGTGAAAGAGAATTTGAGTTTCCAAGTAATGGGATGGTGTGGGGCACAGTTAAAGCAGATTTCTGGGTTGCAGAAGCTGAGGTCTCAGAACTGGTGGAGCTCATTTTGAACAAAAGGGAAGATGAGAATGGCATGATTGAAGAGATGATGGGGAATAATGAGATTGGGGAAAAATCTTCAGACTTCATAGTATATGGGGCAAAATTGACTTTTGTGAATTTGGAAGAAATAGAGATTTATGGGCTTGAATTGAAGGGGCAAAAGCCAGTTTATGCAAATTATTCCATTGATGGGGTTGGTGATGAAGGAGTTGTCTTGGTGCTTCCAGGGCCAAAATGTGGTAAGGAGGGAGATGGTGTTAATGGTGATCGATCTGTGACTGTGGTTATGCCTGAAAATCAACTGGCACAGTTGAAAGTTGAACTCAAAAGGAATTTGAGTATTGCTTGA

Protein Analysis

258

Amino Acids

28.77

Weight (kDa)

5.23

Isoelectric Point (pI)

34.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24510
fragaria_vesca FvH4_5g34840 FvH4_5g34850
malus_domestica MD08G1199200.v1.1 MD08G1199300.v1.1 MD15G1386300.v1.1 MD15G1386800.v1.1
prunus_persica Prupe.1G533000_v2.0.a1
pyrus_communis pycom08g17310 pycom15g34640 pycom15g34680
rosa_chinensis RchiOBHm_Chr1g0364531 RchiOBHm_Chr4g0415781 RchiOBHm_Chr7g0232591 RchiOBHm_Chr7g0235521 RchiOBHm_Chr7g0235551 RchiOBHm_Chr7g0235561 RchiOBHm_Chr7g0235611 RchiOBHm_Chr7g0235721 RchiOBHm_Chr7g0235771
rosa_laevigata RLG00000001141 RLG00000001147 RLG00000001148 RLG00000001151 RLG00000001152 RLG00000001321 RLG00000029743
rosa_multiflora Rmu_co8320053.1_g000001 Rmu_co8402261.1_g000001 Rmu_co8447535.1_g000001 Rmu_sc0001912.1_g000001 Rmu_sc0001912.1_g000003 Rmu_sc0002617.1_g000016 Rmu_sc0002617.1_g000017 Rmu_sc0002892.1_g000022 Rmu_sc0002892.1_g000023 Rmu_sc0002892.1_g000041 Rmu_sc0002892.1_g000042 Rmu_sc0007994.1_g000006 Rmu_sc0010963.1_g000008 Rmu_sc0011151.1_g000005 Rmu_sc0012467.1_g000003 Rmu_ssc0000471.1_g000012 Rmu_ssc0000471.1_g000013
rosa_roxburghii Rroxscaffold_3G00225680 Rroxscaffold_3G00225800 Rroxscaffold_3G00225870 Rroxscaffold_3G00228130 Rroxscaffold_6G00391050
rosa_rugosa Rorug07G0275200 Rorug07G0291500.1 Rorug07G0292000 Rorug07G0292200 Rorug07G0292500 Rorug07G0295900
rosa_samantha Rh7AG430000 Rh7AG446600 Rh7AG446800 Rh7AG447200 Rh7AG447300 Rh7AG447500 Rh7BG403500 Rh7BG418300 Rh7BG418400 Rh7BG418800 Rh7BG419000 Rh7BG419100 Rh7BG419300 Rh7BG419400 Rh7BG419500 Rh7BG419700 Rh7CG448700 Rh7CG466600 Rh7CG467000 Rh7CG467200 Rh7CG467300 Rh7CG467400 Rh7CG467500 Rh7CG468000 Rh7DG419700 Rh7DG435300 Rh7DG435400 Rh7DG435500 Rh7DG435600 Rh7DG436000 Rh7DG436500
rosa_wichuraiana Rw0G011890 Rw7G035510 Rw7G037080 Rw7G037090 Rw7G037110 Rw7G037180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 55
AccB7I CCANNNNNTGG 2 cut(s) 356, 665
AclWI GGATC 1 cut(s) 210
AcsI RAATTY 3 cut(s) 338, 544, 760
AcuI CTGAAG 1 cut(s) 489
AfaI GTAC 3 cut(s) 75, 240, 316
AfiI CCNNNNNNNGG 4 cut(s) 105, 356, 618, 665
AgsI TTSAA 7 cut(s) 236, 436, 467, 575, 580, 742, 749
AjnI CCWGG 1 cut(s) 652
AluBI AGCT 4 cut(s) 230, 263, 404, 427
AluI AGCT 4 cut(s) 230, 263, 404, 427
Alw21I GWGCWC 2 cut(s) 265, 429
Alw26I GTCTC 3 cut(s) 30, 229, 415
AlwI GGATC 1 cut(s) 210
AlwNI CAGNNNCTG 1 cut(s) 404
AoxI GGCC 1 cut(s) 656
ApoI RAATTY 3 cut(s) 338, 544, 760
AspS9I GGNCC 1 cut(s) 656
AsuHPI GGTGA 3 cut(s) 316, 638, 704
BaeGI GKGCMC 1 cut(s) 374
BanII GRGCYC 3 cut(s) 63, 265, 429
BbsI GAAGAC 2 cut(s) 164, 288
Bbv12I GWGCWC 2 cut(s) 265, 429
BbvCI CCTCAGC 1 cut(s) 405
BccI CCATC 5 cut(s) 295, 355, 469, 611, 674
BciT130I CCWGG 1 cut(s) 654
BcoDI GTCTC 3 cut(s) 30, 229, 415
BfuAI ACCTGC 1 cut(s) 55
BmcAI AGTACT 2 cut(s) 75, 240
Bme1390I CCNGG 1 cut(s) 654
BmgT120I GGNCC 1 cut(s) 656
BmrFI CCNGG 1 cut(s) 654
BpiI GAAGAC 2 cut(s) 164, 288
Bpu10I CCTNAGC 1 cut(s) 405
Bsa29I ATCGAT 1 cut(s) 697
BsaI GGTCTC 2 cut(s) 229, 415
BsaJI CCNNGG 2 cut(s) 219, 653
BsaXI ACNNNNNCTCC 2 cut(s) 669, 699
Bsc4I CCNNNNNNNGG 4 cut(s) 105, 356, 618, 665
Bse1I ACTGG 3 cut(s) 423, 593, 735
BseBI CCWGG 1 cut(s) 654
BseCI ATCGAT 1 cut(s) 697
BseDI CCNNGG 2 cut(s) 219, 653
BseGI GGATG 2 cut(s) 306, 366
BseLI CCNNNNNNNGG 4 cut(s) 105, 356, 618, 665
BseMII CTCAG 4 cut(s) 48, 240, 396, 426
BseNI ACTGG 3 cut(s) 423, 593, 735
BseSI GKGCMC 1 cut(s) 374
BshFI GGCC 1 cut(s) 658
BshVI ATCGAT 1 cut(s) 697
BsiHKAI GWGCWC 2 cut(s) 265, 429
BslFI GGGAC 1 cut(s) 307
BslI CCNNNNNNNGG 4 cut(s) 105, 356, 618, 665
BsmAI GTCTC 3 cut(s) 30, 229, 415
BsmFI GGGAC 1 cut(s) 307
BsnI GGCC 1 cut(s) 658
Bso31I GGTCTC 2 cut(s) 229, 415
Bsp1286I GDGCHC 4 cut(s) 63, 265, 374, 429
Bsp1407I TGTACA 1 cut(s) 314
Bsp143I GATC 3 cut(s) 215, 694, 698
BspANI GGCC 1 cut(s) 658
BspCNI CTCAG 4 cut(s) 49, 239, 397, 425
BspDI ATCGAT 1 cut(s) 697
BspMI ACCTGC 1 cut(s) 55
BspPI GGATC 1 cut(s) 210
BspTNI GGTCTC 2 cut(s) 229, 415
BsrGI TGTACA 1 cut(s) 314
BsrI ACTGG 3 cut(s) 423, 593, 735
BssECI CCNNGG 2 cut(s) 219, 653
BssMI GATC 3 cut(s) 215, 694, 698
BssT1I CCWWGG 1 cut(s) 219
Bst2UI CCWGG 1 cut(s) 654
Bst4CI ACNGT 3 cut(s) 376, 709, 738
Bst6I CTCTTC 1 cut(s) 462
BstAUI TGTACA 1 cut(s) 314
BstDEI CTNAG 4 cut(s) 57, 226, 405, 412
BstF5I GGATG 2 cut(s) 306, 366
BstKTI GATC 3 cut(s) 218, 697, 701
BstMAI GTCTC 3 cut(s) 30, 229, 415
BstMBI GATC 3 cut(s) 215, 694, 698
BstMWI GCNNNNNNNGC 1 cut(s) 655
BstNI CCWGG 1 cut(s) 654
BstSCI CCNGG 1 cut(s) 652
BstSLI GKGCMC 1 cut(s) 374
BstV2I GAAGAC 2 cut(s) 164, 288
BstX2I RGATCY 1 cut(s) 215
BstYI RGATCY 1 cut(s) 215
Bsu15I ATCGAT 1 cut(s) 697
BsuRI GGCC 1 cut(s) 658
BsuTUI ATCGAT 1 cut(s) 697
BtsCI GGATG 2 cut(s) 306, 366
BveI ACCTGC 1 cut(s) 55
CaiI CAGNNNCTG 1 cut(s) 404
Cfr13I GGNCC 1 cut(s) 656
ClaI ATCGAT 1 cut(s) 697
Csp6I GTAC 3 cut(s) 74, 239, 315
CviAII CATG 3 cut(s) 32, 173, 460
CviJI RGCY 8 cut(s) 61, 230, 263, 404, 427, 571, 592, 658
CviKI_1 RGCY 8 cut(s) 61, 230, 263, 404, 427, 571, 592, 658
CviQI GTAC 3 cut(s) 74, 239, 315
DdeI CTNAG 4 cut(s) 57, 226, 405, 412
DpnI GATC 3 cut(s) 217, 696, 700
DpnII GATC 3 cut(s) 215, 694, 698
Eam1104I CTCTTC 1 cut(s) 462
EarI CTCTTC 1 cut(s) 462
Ecl136II GAGCTC 2 cut(s) 263, 427
Eco130I CCWWGG 1 cut(s) 219
Eco24I GRGCYC 3 cut(s) 63, 265, 429
Eco31I GGTCTC 2 cut(s) 229, 415
Eco53kI GAGCTC 2 cut(s) 263, 427
Eco57I CTGAAG 1 cut(s) 489
EcoICRI GAGCTC 2 cut(s) 263, 427
EcoRII CCWGG 1 cut(s) 652
EcoT14I CCWWGG 1 cut(s) 219
EcoT38I GRGCYC 3 cut(s) 63, 265, 429
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 3 cut(s) 35, 176, 463
FaqI GGGAC 1 cut(s) 307
FatI CATG 3 cut(s) 31, 172, 459
FauNDI CATATG 1 cut(s) 254
FokI GGATG 2 cut(s) 313, 373
FriOI GRGCYC 3 cut(s) 63, 265, 429
HaeIII GGCC 1 cut(s) 658
Hin1II CATG 3 cut(s) 35, 176, 463
HinfI GANTC 2 cut(s) 95, 113
HphI GGTGA 3 cut(s) 316, 638, 704
Hpy166II GTNNAC 1 cut(s) 135
Hpy188I TCNGA 3 cut(s) 58, 415, 508
Hpy8I GTNNAC 1 cut(s) 135
HpyAV CCTTC 3 cut(s) 284, 574, 626
HpyCH4III ACNGT 3 cut(s) 376, 709, 738
HpyCH4V TGCA 6 cut(s) 31, 50, 150, 248, 398, 602
HpyF10VI GCNNNNNNNGC 1 cut(s) 655
HpyF3I CTNAG 4 cut(s) 57, 226, 405, 412
Hsp92II CATG 3 cut(s) 35, 176, 463
Kzo9I GATC 3 cut(s) 215, 694, 698
LmnI GCTCC 1 cut(s) 424
MaeIII GTNAC 2 cut(s) 304, 703
MalI GATC 3 cut(s) 217, 696, 700
MboI GATC 3 cut(s) 215, 694, 698
MboII GAAGA 6 cut(s) 169, 293, 458, 479, 495, 563
MflI RGATCY 1 cut(s) 215
MhlI GDGCHC 4 cut(s) 63, 265, 374, 429
MluCI AATT 7 cut(s) 189, 338, 530, 544, 575, 604, 760
MnlI CCTC 2 cut(s) 400, 667
MseI TTAA 4 cut(s) 192, 276, 378, 687
MspR9I CCNGG 1 cut(s) 654
MvaI CCWGG 1 cut(s) 654
MwoI GCNNNNNNNGC 1 cut(s) 655
NdeI CATATG 1 cut(s) 254
NdeII GATC 3 cut(s) 215, 694, 698
NlaIII CATG 3 cut(s) 35, 176, 463
NmuCI GTSAC 2 cut(s) 304, 703
PfeI GAWTC 2 cut(s) 95, 113
PflMI CCANNNNNTGG 2 cut(s) 356, 665
Psp124BI GAGCTC 2 cut(s) 265, 429
Psp6I CCWGG 1 cut(s) 652
PspGI CCWGG 1 cut(s) 652
PspPI GGNCC 1 cut(s) 656
PstNI CAGNNNCTG 1 cut(s) 404
PsuI RGATCY 1 cut(s) 215
RsaI GTAC 3 cut(s) 75, 240, 316
RsaNI GTAC 3 cut(s) 74, 239, 315
SacI GAGCTC 2 cut(s) 265, 429
SaqAI TTAA 4 cut(s) 192, 276, 378, 687
Sau3AI GATC 3 cut(s) 215, 694, 698
Sau96I GGNCC 1 cut(s) 656
ScaI AGTACT 2 cut(s) 75, 240
ScrFI CCNGG 1 cut(s) 654
SduI GDGCHC 4 cut(s) 63, 265, 374, 429
SetI ASST 8 cut(s) 10, 49, 225, 232, 265, 406, 411, 429
Sse9I AATT 7 cut(s) 189, 338, 530, 544, 575, 604, 760
SstI GAGCTC 2 cut(s) 265, 429
StyD4I CCNGG 1 cut(s) 652
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 3 cut(s) 376, 709, 738
TaqI TCGA 1 cut(s) 697
TaqII GACCGA 1 cut(s) 57
TasI AATT 7 cut(s) 189, 338, 530, 544, 575, 604, 760
TatI WGTACW 3 cut(s) 73, 238, 314
TfiI GAWTC 2 cut(s) 95, 113
Tru1I TTAA 4 cut(s) 192, 276, 378, 687
Tru9I TTAA 4 cut(s) 192, 276, 378, 687
TseFI GTSAC 2 cut(s) 304, 703
Tsp45I GTSAC 2 cut(s) 304, 703
TspDTI ATGAA 5 cut(s) 48, 161, 170, 502, 645
TspGWI ACGGA 1 cut(s) 88
Van91I CCANNNNNTGG 2 cut(s) 356, 665
XapI RAATTY 3 cut(s) 338, 544, 760
ZrmI AGTACT 2 cut(s) 75, 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.