Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000453

Physical Location & Seq

Genomic Coordinates Forward (+)

28593981 .. 28594639

Gene Structure 659 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0292200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGTTGACTGTTCTCAATCCGGAGGAAGAAACTATCTATTTCATGGATCCATTGCGGCGTCGACTAGTTGGTGGAGAATGGCAAACTGTTGTAGAAAATGAGATCAAAATTTACAATGCTCAAAGAAATAGGTCTGGCCGGAAATCAATAGTGTGGCAAAACATGGGGGGTATTCCGGCACAACAAAATGTGAAGGACTGTGGCATATTCATCATGCGGTACATGAAGGAAATAATTGAGGATAAGAACTTGGGTTTTGCTTCAAAGTGGCAGCGACGATCCGAATTGATCTACACCCAAAAGGATGTTGATGTTGTGAGGTCAGAGTGGGCTAAGTTTGTGATGAAGTATCTTATTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009555 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016053 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048229 GO:0048856 GO:0071704 GO:0072330 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

120

Amino Acids

14.27

Weight (kDa)

9.3

Isoelectric Point (pI)

51.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	6 - 112	4.3e-07	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24510
fragaria_vesca	FvH4_5g34840 FvH4_5g34850
malus_domestica	MD08G1199200.v1.1 MD08G1199300.v1.1 MD15G1386300.v1.1 MD15G1386800.v1.1
prunus_persica	Prupe.1G533000_v2.0.a1
pyrus_communis	pycom08g17310 pycom15g34640 pycom15g34680
rosa_chinensis	RchiOBHm_Chr1g0364531 RchiOBHm_Chr4g0415781 RchiOBHm_Chr7g0232591 RchiOBHm_Chr7g0235521 RchiOBHm_Chr7g0235551 RchiOBHm_Chr7g0235561 RchiOBHm_Chr7g0235611 RchiOBHm_Chr7g0235721 RchiOBHm_Chr7g0235771
rosa_laevigata	RLG00000001141 RLG00000001147 RLG00000001148 RLG00000001151 RLG00000001152 RLG00000001321 RLG00000029743
rosa_multiflora	Rmu_co8320053.1_g000001 Rmu_co8402261.1_g000001 Rmu_co8447535.1_g000001 Rmu_sc0001912.1_g000001 Rmu_sc0001912.1_g000003 Rmu_sc0002617.1_g000016 Rmu_sc0002617.1_g000017 Rmu_sc0002892.1_g000022 Rmu_sc0002892.1_g000023 Rmu_sc0002892.1_g000041 Rmu_sc0002892.1_g000042 Rmu_sc0007994.1_g000006 Rmu_sc0010963.1_g000008 Rmu_sc0011151.1_g000005 Rmu_sc0012467.1_g000003 Rmu_ssc0000471.1_g000012 Rmu_ssc0000471.1_g000013
rosa_roxburghii	Rroxscaffold_3G00225680 Rroxscaffold_3G00225800 Rroxscaffold_3G00225870 Rroxscaffold_3G00228130 Rroxscaffold_6G00391050
rosa_rugosa	Rorug07G0275200 Rorug07G0291500.1 Rorug07G0292000 Rorug07G0292200 Rorug07G0292500 Rorug07G0295900
rosa_samantha	Rh7AG430000 Rh7AG446600 Rh7AG446800 Rh7AG447200 Rh7AG447300 Rh7AG447500 Rh7BG403500 Rh7BG418300 Rh7BG418400 Rh7BG418800 Rh7BG419000 Rh7BG419100 Rh7BG419300 Rh7BG419400 Rh7BG419500 Rh7BG419700 Rh7CG448700 Rh7CG466600 Rh7CG467000 Rh7CG467200 Rh7CG467300 Rh7CG467400 Rh7CG467500 Rh7CG468000 Rh7DG419700 Rh7DG435300 Rh7DG435400 Rh7DG435500 Rh7DG435600 Rh7DG436000 Rh7DG436500
rosa_wichuraiana	Rw0G011890 Rw7G035510 Rw7G037080 Rw7G037090 Rw7G037110 Rw7G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	61
AccIII	TCCGGA	1 cut(s)	19
AciI	CCGC	2 cut(s)	55, 217
AclWI	GGATC	3 cut(s)	41, 54, 273
AcoI	YGGCCR	1 cut(s)	136
AcsI	RAATTY	1 cut(s)	108
AcyI	GRCGYC	1 cut(s)	58
AfaI	GTAC	1 cut(s)	221
AgsI	TTSAA	1 cut(s)	264
AhlI	ACTAGT	1 cut(s)	64
AlwI	GGATC	3 cut(s)	41, 54, 273
Aor13HI	TCCGGA	1 cut(s)	19
AoxI	GGCC	1 cut(s)	136
ApeKI	GCWGC	1 cut(s)	271
ApoI	RAATTY	1 cut(s)	108
BamHI	GGATCC	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	283
BcuI	ACTAGT	1 cut(s)	64
BfaI	CTAG	1 cut(s)	65
BisI	GCNGC	2 cut(s)	56, 272
BlsI	GCNGC	2 cut(s)	57, 273
BmiI	GGNNCC	1 cut(s)	48
BsaHI	GRCGYC	1 cut(s)	58
BsaWI	WCCGGW	1 cut(s)	19
Bse3DI	GCAATG	1 cut(s)	50
BseAI	TCCGGA	1 cut(s)	19
BseGI	GGATG	1 cut(s)	310
BseMI	GCAATG	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	283
BshFI	GGCC	1 cut(s)	138
BsiSI	CCGG	3 cut(s)	20, 139, 176
BsnI	GGCC	1 cut(s)	138
Bsp13I	TCCGGA	1 cut(s)	19
Bsp143I	GATC	4 cut(s)	46, 102, 278, 288
BspACI	CCGC	2 cut(s)	55, 217
BspANI	GGCC	1 cut(s)	138
BspEI	TCCGGA	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	48
BspPI	GGATC	3 cut(s)	41, 54, 273
BsrDI	GCAATG	1 cut(s)	50
BssMI	GATC	4 cut(s)	46, 102, 278, 288
BssNI	GRCGYC	1 cut(s)	58
Bst4CI	ACNGT	3 cut(s)	10, 88, 200
BstACI	GRCGYC	1 cut(s)	58
BstDEI	CTNAG	1 cut(s)	333
BstF5I	GGATG	1 cut(s)	310
BstKTI	GATC	4 cut(s)	49, 105, 281, 291
BstMBI	GATC	4 cut(s)	46, 102, 278, 288
BstV1I	GCAGC	1 cut(s)	283
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BsuRI	GGCC	1 cut(s)	138
BtsCI	GGATG	1 cut(s)	310
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	4 cut(s)	43, 163, 214, 223
CviJI	RGCY	2 cut(s)	138, 332
CviKI_1	RGCY	2 cut(s)	138, 332
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	1 cut(s)	333
DpnI	GATC	4 cut(s)	48, 104, 280, 290
DpnII	GATC	4 cut(s)	46, 102, 278, 288
EaeI	YGGCCR	1 cut(s)	136
FaeI	CATG	4 cut(s)	46, 166, 217, 226
FaiI	YATR	6 cut(s)	44, 164, 206, 215, 224, 361
FatI	CATG	4 cut(s)	42, 162, 213, 222
FblI	GTMKAC	1 cut(s)	61
Fnu4HI	GCNGC	2 cut(s)	56, 272
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	2 cut(s)	56, 272
FspBI	CTAG	1 cut(s)	65
GluI	GCNGC	2 cut(s)	56, 272
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	3 cut(s)	20, 139, 176
HgaI	GACGC	1 cut(s)	47
Hin1I	GRCGYC	1 cut(s)	58
Hin1II	CATG	4 cut(s)	46, 166, 217, 226
HincII	GTYRAC	2 cut(s)	6, 62
HindII	GTYRAC	2 cut(s)	6, 62
HpaII	CCGG	3 cut(s)	20, 139, 176
Hpy166II	GTNNAC	2 cut(s)	6, 62
Hpy188I	TCNGA	2 cut(s)	283, 325
Hpy188III	TCNNGA	1 cut(s)	20
Hpy8I	GTNNAC	2 cut(s)	6, 62
Hpy99I	CGWCG	2 cut(s)	63, 279
HpyAV	CCTTC	2 cut(s)	187, 220
HpyCH4III	ACNGT	3 cut(s)	10, 88, 200
HpyF3I	CTNAG	1 cut(s)	333
Hsp92I	GRCGYC	1 cut(s)	58
Hsp92II	CATG	4 cut(s)	46, 166, 217, 226
Kpn2I	TCCGGA	1 cut(s)	19
Kzo9I	GATC	4 cut(s)	46, 102, 278, 288
LpnPI	CCDG	4 cut(s)	33, 120, 152, 189
Lsp1109I	GCAGC	1 cut(s)	283
MaeI	CTAG	1 cut(s)	65
MalI	GATC	4 cut(s)	48, 104, 280, 290
MboI	GATC	4 cut(s)	46, 102, 278, 288
MboII	GAAGA	1 cut(s)	38
MflI	RGATCY	1 cut(s)	46
MluCI	AATT	3 cut(s)	108, 234, 284
MnlI	CCTC	3 cut(s)	16, 232, 312
MroI	TCCGGA	1 cut(s)	19
MspI	CCGG	3 cut(s)	20, 139, 176
NdeII	GATC	4 cut(s)	46, 102, 278, 288
NlaIII	CATG	4 cut(s)	46, 166, 217, 226
NlaIV	GGNNCC	1 cut(s)	48
PkrI	GCNGC	2 cut(s)	57, 273
PspN4I	GGNNCC	1 cut(s)	48
PsuI	RGATCY	1 cut(s)	46
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
SalI	GTCGAC	1 cut(s)	60
SatI	GCNGC	2 cut(s)	56, 272
Sau3AI	GATC	4 cut(s)	46, 102, 278, 288
SetI	ASST	2 cut(s)	134, 323
SpeI	ACTAGT	1 cut(s)	64
Sse9I	AATT	3 cut(s)	108, 234, 284
SsiI	CCGC	2 cut(s)	55, 217
SspMI	CTAG	1 cut(s)	65
TaaI	ACNGT	3 cut(s)	10, 88, 200
TaqI	TCGA	1 cut(s)	61
TasI	AATT	3 cut(s)	108, 234, 284
TauI	GCSGC	1 cut(s)	58
TseI	GCWGC	1 cut(s)	271
TspDTI	ATGAA	5 cut(s)	31, 199, 239, 348, 359
XapI	RAATTY	1 cut(s)	108
XmiI	GTMKAC	1 cut(s)	61
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.