Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000453

Physical Location & Seq

Genomic Coordinates Reverse (-)

61892244 .. 61892613

Gene Structure 370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG435400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGTGTAACGATGGCGGTGTGAGAATTGTGGAGGCACGTTGTGACGAAACGGTCGATGAATGGTTGGCCATGGCTGTGGAGGATGATTCTACTTTTGATGGTCTTGCTTATAATCAAGCACTTGGTGATACTGATCTTGATTTCTCTCCTTTGGTCTTTATACAGACGGATACTTTTACTATTGGGCTGAACGAAAAAGACTTGATTGATCTCCAAGTATACAAAATTAATGCCCTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009555 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016053 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048229 GO:0048856 GO:0071704 GO:0072330 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

80

Amino Acids

8.91

Weight (kDa)

4.05

Isoelectric Point (pI)

22.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24510
fragaria_vesca	FvH4_5g34840 FvH4_5g34850
malus_domestica	MD08G1199200.v1.1 MD08G1199300.v1.1 MD15G1386300.v1.1 MD15G1386800.v1.1
prunus_persica	Prupe.1G533000_v2.0.a1
pyrus_communis	pycom08g17310 pycom15g34640 pycom15g34680
rosa_chinensis	RchiOBHm_Chr1g0364531 RchiOBHm_Chr4g0415781 RchiOBHm_Chr7g0232591 RchiOBHm_Chr7g0235521 RchiOBHm_Chr7g0235551 RchiOBHm_Chr7g0235561 RchiOBHm_Chr7g0235611 RchiOBHm_Chr7g0235721 RchiOBHm_Chr7g0235771
rosa_laevigata	RLG00000001141 RLG00000001147 RLG00000001148 RLG00000001151 RLG00000001152 RLG00000001321 RLG00000029743
rosa_multiflora	Rmu_co8320053.1_g000001 Rmu_co8402261.1_g000001 Rmu_co8447535.1_g000001 Rmu_sc0001912.1_g000001 Rmu_sc0001912.1_g000003 Rmu_sc0002617.1_g000016 Rmu_sc0002617.1_g000017 Rmu_sc0002892.1_g000022 Rmu_sc0002892.1_g000023 Rmu_sc0002892.1_g000041 Rmu_sc0002892.1_g000042 Rmu_sc0007994.1_g000006 Rmu_sc0010963.1_g000008 Rmu_sc0011151.1_g000005 Rmu_sc0012467.1_g000003 Rmu_ssc0000471.1_g000012 Rmu_ssc0000471.1_g000013
rosa_roxburghii	Rroxscaffold_3G00225680 Rroxscaffold_3G00225800 Rroxscaffold_3G00225870 Rroxscaffold_3G00228130 Rroxscaffold_6G00391050
rosa_rugosa	Rorug07G0275200 Rorug07G0291500.1 Rorug07G0292000 Rorug07G0292200 Rorug07G0292500 Rorug07G0295900
rosa_samantha	Rh7AG430000 Rh7AG446600 Rh7AG446800 Rh7AG447200 Rh7AG447300 Rh7AG447500 Rh7BG403500 Rh7BG418300 Rh7BG418400 Rh7BG418800 Rh7BG419000 Rh7BG419100 Rh7BG419300 Rh7BG419400 Rh7BG419500 Rh7BG419700 Rh7CG448700 Rh7CG466600 Rh7CG467000 Rh7CG467200 Rh7CG467300 Rh7CG467400 Rh7CG467500 Rh7CG468000 Rh7DG419700 Rh7DG435300 Rh7DG435400 Rh7DG435500 Rh7DG435600 Rh7DG436000 Rh7DG436500
rosa_wichuraiana	Rw0G011890 Rw7G035510 Rw7G037080 Rw7G037090 Rw7G037110 Rw7G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	111
AasI	GACNNNNNNGTC	1 cut(s)	50
AccI	GTMKAC	1 cut(s)	219
AciI	CCGC	1 cut(s)	15
AcoI	YGGCCR	1 cut(s)	66
AdeI	CACNNNGTG	2 cut(s)	41, 125
AoxI	GGCC	1 cut(s)	66
AseI	ATTAAT	1 cut(s)	228
AsuHPI	GGTGA	1 cut(s)	137
BalI	TGGCCA	1 cut(s)	68
BccI	CCATC	2 cut(s)	5, 92
BciVI	GTATCC	1 cut(s)	163
BfuI	GTATCC	1 cut(s)	163
BsaBI	GATNNNNATC	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	69
Bse8I	GATNNNNATC	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	1 cut(s)	88
BseJI	GATNNNNATC	1 cut(s)	132
Bsh1285I	CGRYCG	1 cut(s)	54
BshFI	GGCC	1 cut(s)	68
BsiEI	CGRYCG	1 cut(s)	54
BsnI	GGCC	1 cut(s)	68
Bsp143I	GATC	2 cut(s)	133, 208
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	1 cut(s)	15
BspANI	GGCC	1 cut(s)	68
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	2 cut(s)	133, 208
BssNAI	GTATAC	1 cut(s)	220
BssT1I	CCWWGG	1 cut(s)	69
Bst1107I	GTATAC	1 cut(s)	220
Bst4CI	ACNGT	1 cut(s)	52
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	1 cut(s)	88
BstKTI	GATC	2 cut(s)	136, 211
BstMBI	GATC	2 cut(s)	133, 208
BstMCI	CGRYCG	1 cut(s)	54
BstXI	CCANNNNNNTGG	1 cut(s)	76
BstZ17I	GTATAC	1 cut(s)	220
BsuI	GTATCC	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	68
BtgI	CCRYGG	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	88
CviAII	CATG	1 cut(s)	70
CviJI	RGCY	3 cut(s)	68, 74, 187
CviKI_1	RGCY	3 cut(s)	68, 74, 187
DpnI	GATC	2 cut(s)	135, 210
DpnII	GATC	2 cut(s)	133, 208
DraIII	CACNNNGTG	2 cut(s)	41, 125
DrdI	GACNNNNNNGTC	1 cut(s)	50
DseDI	GACNNNNNNGTC	1 cut(s)	50
EaeI	YGGCCR	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	1 cut(s)	73
FaiI	YATR	4 cut(s)	71, 111, 161, 220
FatI	CATG	1 cut(s)	69
FblI	GTMKAC	1 cut(s)	219
FokI	GGATG	1 cut(s)	95
HaeIII	GGCC	1 cut(s)	68
Hin1II	CATG	1 cut(s)	73
HinfI	GANTC	1 cut(s)	86
HphI	GGTGA	1 cut(s)	137
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188III	TCNNGA	1 cut(s)	137
Hpy8I	GTNNAC	1 cut(s)	220
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4IV	ACGT	1 cut(s)	37
HpySE526I	ACGT	1 cut(s)	37
Hsp92II	CATG	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	133, 208
MaeII	ACGT	1 cut(s)	37
MaeIII	GTNAC	2 cut(s)	5, 41
MalI	GATC	2 cut(s)	135, 210
MboI	GATC	2 cut(s)	133, 208
MlsI	TGGCCA	1 cut(s)	68
MluCI	AATT	2 cut(s)	24, 225
MluNI	TGGCCA	1 cut(s)	68
MnlI	CCTC	2 cut(s)	25, 73
Mox20I	TGGCCA	1 cut(s)	68
MscI	TGGCCA	1 cut(s)	68
MseI	TTAA	2 cut(s)	228, 241
MslI	CAYNNNNRTG	1 cut(s)	74
Msp20I	TGGCCA	1 cut(s)	68
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	2 cut(s)	133, 208
NlaIII	CATG	1 cut(s)	73
NmuCI	GTSAC	1 cut(s)	41
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	86
PshBI	ATTAAT	1 cut(s)	228
PsiI	TTATAA	1 cut(s)	111
RseI	CAYNNNNRTG	1 cut(s)	74
SaqAI	TTAA	2 cut(s)	228, 241
Sau3AI	GATC	2 cut(s)	133, 208
SetI	ASST	1 cut(s)	40
SgeI	CNNG	8 cut(s)	48, 82, 116, 128, 134, 149, 214, 227
SmiMI	CAYNNNNRTG	1 cut(s)	74
Sse9I	AATT	2 cut(s)	24, 225
SsiI	CCGC	1 cut(s)	15
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	52
TaiI	ACGT	1 cut(s)	40
TaqI	TCGA	1 cut(s)	54
TasI	AATT	2 cut(s)	24, 225
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	2 cut(s)	228, 241
Tru9I	TTAA	2 cut(s)	228, 241
TseFI	GTSAC	1 cut(s)	41
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	1 cut(s)	72
TspGWI	ACGGA	1 cut(s)	182
VspI	ATTAAT	1 cut(s)	228
XmiI	GTMKAC	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.