Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000453

Physical Location & Seq

Genomic Coordinates Reverse (-)

47574690 .. 47575085

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG419500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGTGTCAATATCAACTAACAACATCCAGTGCCTCGAATCTAGCAGGAAGCTCTCTTCCATCATGCCTGCAATGGTGATCGGTGGAAAGGTCCATGAGCTGACCAACATGGACTTGGCCATAAAGCTACACTACATCAAAGGGGTCTACTTTTTCAACAGTAATGCAGTCGAGGGGCTTACGATGTATGACTTGAAGAAGCCTATGTTCCAATTGATCCAACTTTACTTCCCAGCCGCTGGGAGAATCCGAAGATCTGAAACGGGCCGGCCTTTCATCACGTGCAATGATAGTAGTGTGAGGATTGTGGAGGCAGGTTGTGACGAAACCACCGATGAGTGGCTGGCCATGGCTATGGAGGATGGTTCTGCTTCTGATGGTCTTGCTTATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009555 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016053 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048229 GO:0048856 GO:0071704 GO:0072330 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

131

Amino Acids

14.55

Weight (kDa)

5.3

Isoelectric Point (pI)

43.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	20 - 118	7.5e-12	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24510
fragaria_vesca	FvH4_5g34840 FvH4_5g34850
malus_domestica	MD08G1199200.v1.1 MD08G1199300.v1.1 MD15G1386300.v1.1 MD15G1386800.v1.1
prunus_persica	Prupe.1G533000_v2.0.a1
pyrus_communis	pycom08g17310 pycom15g34640 pycom15g34680
rosa_chinensis	RchiOBHm_Chr1g0364531 RchiOBHm_Chr4g0415781 RchiOBHm_Chr7g0232591 RchiOBHm_Chr7g0235521 RchiOBHm_Chr7g0235551 RchiOBHm_Chr7g0235561 RchiOBHm_Chr7g0235611 RchiOBHm_Chr7g0235721 RchiOBHm_Chr7g0235771
rosa_laevigata	RLG00000001141 RLG00000001147 RLG00000001148 RLG00000001151 RLG00000001152 RLG00000001321 RLG00000029743
rosa_multiflora	Rmu_co8320053.1_g000001 Rmu_co8402261.1_g000001 Rmu_co8447535.1_g000001 Rmu_sc0001912.1_g000001 Rmu_sc0001912.1_g000003 Rmu_sc0002617.1_g000016 Rmu_sc0002617.1_g000017 Rmu_sc0002892.1_g000022 Rmu_sc0002892.1_g000023 Rmu_sc0002892.1_g000041 Rmu_sc0002892.1_g000042 Rmu_sc0007994.1_g000006 Rmu_sc0010963.1_g000008 Rmu_sc0011151.1_g000005 Rmu_sc0012467.1_g000003 Rmu_ssc0000471.1_g000012 Rmu_ssc0000471.1_g000013
rosa_roxburghii	Rroxscaffold_3G00225680 Rroxscaffold_3G00225800 Rroxscaffold_3G00225870 Rroxscaffold_3G00228130 Rroxscaffold_6G00391050
rosa_rugosa	Rorug07G0275200 Rorug07G0291500.1 Rorug07G0292000 Rorug07G0292200 Rorug07G0292500 Rorug07G0295900
rosa_samantha	Rh7AG430000 Rh7AG446600 Rh7AG446800 Rh7AG447200 Rh7AG447300 Rh7AG447500 Rh7BG403500 Rh7BG418300 Rh7BG418400 Rh7BG418800 Rh7BG419000 Rh7BG419100 Rh7BG419300 Rh7BG419400 Rh7BG419500 Rh7BG419700 Rh7CG448700 Rh7CG466600 Rh7CG467000 Rh7CG467200 Rh7CG467300 Rh7CG467400 Rh7CG467500 Rh7CG468000 Rh7DG419700 Rh7DG435300 Rh7DG435400 Rh7DG435500 Rh7DG435600 Rh7DG436000 Rh7DG436500
rosa_wichuraiana	Rw0G011890 Rw7G035510 Rw7G037080 Rw7G037090 Rw7G037110 Rw7G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	390
Acc36I	ACCTGC	1 cut(s)	305
AccB7I	CCANNNNNTGG	1 cut(s)	239
AccI	GTMKAC	1 cut(s)	147
AciI	CCGC	1 cut(s)	237
AclWI	GGATC	1 cut(s)	211
AcoI	YGGCCR	2 cut(s)	117, 345
AcvI	CACGTG	1 cut(s)	282
AfiI	CCNNNNNNNGG	2 cut(s)	239, 339
AgsI	TTSAA	2 cut(s)	157, 196
AluBI	AGCT	3 cut(s)	52, 100, 127
AluI	AGCT	3 cut(s)	52, 100, 127
AlwI	GGATC	1 cut(s)	211
AlwNI	CAGNNNCTG	1 cut(s)	239
AoxI	GGCC	4 cut(s)	117, 265, 269, 345
AspS9I	GGNCC	2 cut(s)	91, 265
AsuHPI	GGTGA	1 cut(s)	88
AvaII	GGWCC	1 cut(s)	91
BalI	TGGCCA	2 cut(s)	119, 347
BbrPI	CACGTG	1 cut(s)	282
BccI	CCATC	3 cut(s)	68, 356, 371
BfaI	CTAG	1 cut(s)	42
BfuAI	ACCTGC	1 cut(s)	305
BglII	AGATCT	1 cut(s)	254
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	2 cut(s)	91, 265
BsaAI	YACGTR	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	348
Bsc4I	CCNNNNNNNGG	2 cut(s)	239, 339
Bse118I	RCCGGY	1 cut(s)	267
Bse1I	ACTGG	1 cut(s)	28
Bse3DI	GCAATG	2 cut(s)	78, 292
BseDI	CCNNGG	1 cut(s)	348
BseGI	GGATG	2 cut(s)	24, 367
BseLI	CCNNNNNNNGG	2 cut(s)	239, 339
BseMI	GCAATG	2 cut(s)	78, 292
BseNI	ACTGG	1 cut(s)	28
BseYI	CCCAGC	2 cut(s)	232, 239
BshFI	GGCC	4 cut(s)	119, 267, 271, 347
BsiSI	CCGG	1 cut(s)	268
BslI	CCNNNNNNNGG	2 cut(s)	239, 339
BsnI	GGCC	4 cut(s)	119, 267, 271, 347
Bsp143I	GATC	3 cut(s)	78, 216, 254
Bsp19I	CCATGG	1 cut(s)	348
BspACI	CCGC	1 cut(s)	237
BspANI	GGCC	4 cut(s)	119, 267, 271, 347
BspMI	ACCTGC	1 cut(s)	305
BspPI	GGATC	1 cut(s)	211
BsrDI	GCAATG	2 cut(s)	78, 292
BsrFI	RCCGGY	1 cut(s)	267
BsrI	ACTGG	1 cut(s)	28
BssAI	RCCGGY	1 cut(s)	267
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	3 cut(s)	78, 216, 254
BssT1I	CCWWGG	1 cut(s)	348
Bst4CI	ACNGT	1 cut(s)	161
Bst6I	CTCTTC	1 cut(s)	61
BstBAI	YACGTR	1 cut(s)	282
BstC8I	GCNNGC	3 cut(s)	69, 269, 345
BstDSI	CCRYGG	1 cut(s)	348
BstF5I	GGATG	2 cut(s)	24, 367
BstKTI	GATC	3 cut(s)	81, 219, 257
BstMBI	GATC	3 cut(s)	78, 216, 254
BstX2I	RGATCY	1 cut(s)	254
BstXI	CCANNNNNNTGG	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	254
BsuRI	GGCC	4 cut(s)	119, 267, 271, 347
BtgI	CCRYGG	1 cut(s)	348
BtsCI	GGATG	2 cut(s)	24, 367
BtsIMutI	CAGTG	1 cut(s)	35
BveI	ACCTGC	1 cut(s)	305
Cac8I	GCNNGC	3 cut(s)	69, 269, 345
CaiI	CAGNNNCTG	1 cut(s)	239
Cfr10I	RCCGGY	1 cut(s)	267
Cfr13I	GGNCC	2 cut(s)	91, 265
CviAII	CATG	4 cut(s)	64, 95, 109, 349
DpnI	GATC	3 cut(s)	80, 218, 256
DpnII	GATC	3 cut(s)	78, 216, 254
EaeI	YGGCCR	2 cut(s)	117, 345
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	348
Eco47I	GGWCC	1 cut(s)	91
Eco72I	CACGTG	1 cut(s)	282
EcoT14I	CCWWGG	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	4 cut(s)	67, 98, 112, 352
FaiI	YATR	9 cut(s)	65, 96, 110, 122, 189, 206, 350, 356, 390
FatI	CATG	4 cut(s)	63, 94, 108, 348
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	1 cut(s)	237
FokI	GGATG	2 cut(s)	11, 374
FseI	GGCCGGCC	1 cut(s)	271
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	1 cut(s)	42
GluI	GCNGC	1 cut(s)	237
GsaI	CCCAGC	2 cut(s)	236, 243
HaeIII	GGCC	4 cut(s)	119, 267, 271, 347
HapII	CCGG	1 cut(s)	268
Hin1II	CATG	4 cut(s)	67, 98, 112, 352
HinfI	GANTC	2 cut(s)	38, 246
HpaII	CCGG	1 cut(s)	268
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	3 cut(s)	251, 259, 376
Hpy8I	GTNNAC	1 cut(s)	148
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4IV	ACGT	1 cut(s)	281
HpyCH4V	TGCA	3 cut(s)	71, 167, 285
HpySE526I	ACGT	1 cut(s)	281
Hsp92II	CATG	4 cut(s)	67, 98, 112, 352
KroI	GCCGGC	1 cut(s)	267
KroNI	GCCGGC	1 cut(s)	269
Kzo9I	GATC	3 cut(s)	78, 216, 254
LpnPI	CCDG	8 cut(s)	31, 41, 81, 225, 246, 281, 300, 329
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	1 cut(s)	281
MaeIII	GTNAC	1 cut(s)	320
MalI	GATC	3 cut(s)	80, 218, 256
MboI	GATC	3 cut(s)	78, 216, 254
MboII	GAAGA	3 cut(s)	48, 208, 264
MfeI	CAATTG	1 cut(s)	212
MflI	RGATCY	1 cut(s)	254
MlsI	TGGCCA	2 cut(s)	119, 347
MluCI	AATT	1 cut(s)	212
MluNI	TGGCCA	2 cut(s)	119, 347
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	5 cut(s)	44, 166, 294, 304, 352
Mox20I	TGGCCA	2 cut(s)	119, 347
MroNI	GCCGGC	1 cut(s)	267
MscI	TGGCCA	2 cut(s)	119, 347
MslI	CAYNNNNRTG	1 cut(s)	353
Msp20I	TGGCCA	2 cut(s)	119, 347
MspA1I	CMGCKG	1 cut(s)	239
MspI	CCGG	1 cut(s)	268
MunI	CAATTG	1 cut(s)	212
NaeI	GCCGGC	1 cut(s)	269
NcoI	CCATGG	1 cut(s)	348
NdeII	GATC	3 cut(s)	78, 216, 254
NgoMIV	GCCGGC	1 cut(s)	267
NlaIII	CATG	4 cut(s)	67, 98, 112, 352
NmuCI	GTSAC	1 cut(s)	320
PcsI	WCGNNNNNNNCGW	1 cut(s)	330
PdiI	GCCGGC	1 cut(s)	269
PfeI	GAWTC	2 cut(s)	38, 246
PflMI	CCANNNNNTGG	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	238
PmaCI	CACGTG	1 cut(s)	282
PmlI	CACGTG	1 cut(s)	282
Ppu21I	YACGTR	1 cut(s)	282
PsiI	TTATAA	1 cut(s)	390
PspCI	CACGTG	1 cut(s)	282
PspFI	CCCAGC	2 cut(s)	232, 239
PspPI	GGNCC	2 cut(s)	91, 265
PstNI	CAGNNNCTG	1 cut(s)	239
PsuI	RGATCY	1 cut(s)	254
RigI	GGCCGGCC	1 cut(s)	271
RseI	CAYNNNNRTG	1 cut(s)	353
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	3 cut(s)	78, 216, 254
Sau96I	GGNCC	2 cut(s)	91, 265
SetI	ASST	6 cut(s)	54, 93, 102, 129, 284, 319
SinI	GGWCC	1 cut(s)	91
SmiMI	CAYNNNNRTG	1 cut(s)	353
Sse9I	AATT	1 cut(s)	212
SsiI	CCGC	1 cut(s)	237
SspMI	CTAG	1 cut(s)	42
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	1 cut(s)	161
TaiI	ACGT	1 cut(s)	284
TaqI	TCGA	2 cut(s)	36, 171
TasI	AATT	1 cut(s)	212
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	2 cut(s)	38, 246
TscAI	CASTG	1 cut(s)	35
TseFI	GTSAC	1 cut(s)	320
Tsp45I	GTSAC	1 cut(s)	320
TspDTI	ATGAA	1 cut(s)	265
TspRI	CASTG	1 cut(s)	35
Van91I	CCANNNNNTGG	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	91
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112
XmiI	GTMKAC	1 cut(s)	147
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.