Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000453

Physical Location & Seq

Genomic Coordinates Reverse (-)

62381797 .. 62382420

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG467200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAAGACGCACACTTTTCATGTTCCTGCAGATAAAATTAATCATCTTCTCTCGAACCAAAGATCTAAGGTCTCGGCTTTTGAAGTAATTTCTGCACTCATATGGAAATTTATGTCCAAGATCAAGAAAAACCCAGAAGAGACAAGGATGGTGACTCTCTGTACAAACAAATCTCATAAAAGAGAATTTGAGTTTCCAAGTAATGGGATGGTGTGGAGCACAGTTGAAGCGACTTTCTGGGTTGCAGAAGCTGAGGTCTTAGAGCTGGTGGAGCTAATATTGAACAAAAAGATAGATGAGAATGGCTTGATTACAGAAATGATGAGGAATAATTATAGTGAGGAGTTGTCTTCAGACTTCATAACATATGGGGCAAACTTGACGTTTGTGAATTTGGAAGATGCACAGATTTATGGGCTTGAATTGAAAGGGAAAATGCCAGTTTATGCAAATTATACCATTAGTGGAGTTGGTGATAAAGGAGTTGTTTTGGTGCTTCCAAGGCCAAACTATGGTAAAAAGGGTGATGGTGTTAATGGTGATCAAACTGTGACTGTGGTTCTGCCAGAAAATCAACTTACACAGTTGAAGGTTAAGCTCATAAGAAATTGGAGCATTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009555 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016053 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048229 GO:0048856 GO:0071704 GO:0072330 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

207

Amino Acids

23.46

Weight (kDa)

6.92

Isoelectric Point (pI)

28.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24510
fragaria_vesca	FvH4_5g34840 FvH4_5g34850
malus_domestica	MD08G1199200.v1.1 MD08G1199300.v1.1 MD15G1386300.v1.1 MD15G1386800.v1.1
prunus_persica	Prupe.1G533000_v2.0.a1
pyrus_communis	pycom08g17310 pycom15g34640 pycom15g34680
rosa_chinensis	RchiOBHm_Chr1g0364531 RchiOBHm_Chr4g0415781 RchiOBHm_Chr7g0232591 RchiOBHm_Chr7g0235521 RchiOBHm_Chr7g0235551 RchiOBHm_Chr7g0235561 RchiOBHm_Chr7g0235611 RchiOBHm_Chr7g0235721 RchiOBHm_Chr7g0235771
rosa_laevigata	RLG00000001141 RLG00000001147 RLG00000001148 RLG00000001151 RLG00000001152 RLG00000001321 RLG00000029743
rosa_multiflora	Rmu_co8320053.1_g000001 Rmu_co8402261.1_g000001 Rmu_co8447535.1_g000001 Rmu_sc0001912.1_g000001 Rmu_sc0001912.1_g000003 Rmu_sc0002617.1_g000016 Rmu_sc0002617.1_g000017 Rmu_sc0002892.1_g000022 Rmu_sc0002892.1_g000023 Rmu_sc0002892.1_g000041 Rmu_sc0002892.1_g000042 Rmu_sc0007994.1_g000006 Rmu_sc0010963.1_g000008 Rmu_sc0011151.1_g000005 Rmu_sc0012467.1_g000003 Rmu_ssc0000471.1_g000012 Rmu_ssc0000471.1_g000013
rosa_roxburghii	Rroxscaffold_3G00225680 Rroxscaffold_3G00225800 Rroxscaffold_3G00225870 Rroxscaffold_3G00228130 Rroxscaffold_6G00391050
rosa_rugosa	Rorug07G0275200 Rorug07G0291500.1 Rorug07G0292000 Rorug07G0292200 Rorug07G0292500 Rorug07G0295900
rosa_samantha	Rh7AG430000 Rh7AG446600 Rh7AG446800 Rh7AG447200 Rh7AG447300 Rh7AG447500 Rh7BG403500 Rh7BG418300 Rh7BG418400 Rh7BG418800 Rh7BG419000 Rh7BG419100 Rh7BG419300 Rh7BG419400 Rh7BG419500 Rh7BG419700 Rh7CG448700 Rh7CG466600 Rh7CG467000 Rh7CG467200 Rh7CG467300 Rh7CG467400 Rh7CG467500 Rh7CG468000 Rh7DG419700 Rh7DG435300 Rh7DG435400 Rh7DG435500 Rh7DG435600 Rh7DG436000 Rh7DG436500
rosa_wichuraiana	Rw0G011890 Rw7G035510 Rw7G037080 Rw7G037090 Rw7G037110 Rw7G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	203, 512
AcsI	RAATTY	3 cut(s)	107, 185, 391
AcuI	CTGAAG	1 cut(s)	336
AfaI	GTAC	1 cut(s)	163
AfiI	CCNNNNNNNGG	2 cut(s)	203, 512
AgsI	TTSAA	6 cut(s)	83, 227, 283, 422, 427, 589
AluBI	AGCT	4 cut(s)	251, 265, 274, 598
AluI	AGCT	4 cut(s)	251, 265, 274, 598
Alw21I	GWGCWC	1 cut(s)	221
Alw26I	GTCTC	2 cut(s)	76, 134
AlwNI	CAGNNNCTG	1 cut(s)	251
AoxI	GGCC	1 cut(s)	503
ApoI	RAATTY	3 cut(s)	107, 185, 391
AseI	ATTAAT	1 cut(s)	39
AsuHPI	GGTGA	4 cut(s)	163, 485, 536, 551
BbsI	GAAGAC	2 cut(s)	11, 342
Bbv12I	GWGCWC	1 cut(s)	221
BbvCI	CCTCAGC	1 cut(s)	252
BccI	CCATC	3 cut(s)	142, 202, 521
BclI	TGATCA	1 cut(s)	541
BcoDI	GTCTC	2 cut(s)	76, 134
BfmI	CTRYAG	1 cut(s)	27
BglII	AGATCT	1 cut(s)	62
BmsI	GCATC	1 cut(s)	391
BpiI	GAAGAC	2 cut(s)	11, 342
Bpu10I	CCTNAGC	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	76
BsaJI	CCNNGG	1 cut(s)	500
Bsc4I	CCNNNNNNNGG	2 cut(s)	203, 512
Bse1I	ACTGG	1 cut(s)	440
BseDI	CCNNGG	1 cut(s)	500
BseGI	GGATG	2 cut(s)	153, 213
BseLI	CCNNNNNNNGG	2 cut(s)	203, 512
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	1 cut(s)	440
BseRI	GAGGAG	1 cut(s)	356
BsgI	GTGCAG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	505
BsiHKAI	GWGCWC	1 cut(s)	221
BslI	CCNNNNNNNGG	2 cut(s)	203, 512
BsmAI	GTCTC	2 cut(s)	76, 134
BsnI	GGCC	1 cut(s)	505
Bso31I	GGTCTC	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp1407I	TGTACA	1 cut(s)	161
Bsp143I	GATC	3 cut(s)	62, 120, 541
BspANI	GGCC	1 cut(s)	505
BspCNI	CTCAG	1 cut(s)	244
BspMAI	CTGCAG	1 cut(s)	31
BspTNI	GGTCTC	1 cut(s)	76
BsrGI	TGTACA	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	440
BssECI	CCNNGG	1 cut(s)	500
BssMI	GATC	3 cut(s)	62, 120, 541
BssT1I	CCWWGG	1 cut(s)	500
Bst4CI	ACNGT	4 cut(s)	223, 550, 556, 585
Bst6I	CTCTTC	1 cut(s)	132
BstAUI	TGTACA	1 cut(s)	161
BstDEI	CTNAG	3 cut(s)	66, 252, 259
BstF5I	GGATG	2 cut(s)	153, 213
BstKTI	GATC	3 cut(s)	65, 123, 544
BstMAI	GTCTC	2 cut(s)	76, 134
BstMBI	GATC	3 cut(s)	62, 120, 541
BstMWI	GCNNNNNNNGC	2 cut(s)	271, 502
BstSFI	CTRYAG	1 cut(s)	27
BstV2I	GAAGAC	2 cut(s)	11, 342
BstX2I	RGATCY	1 cut(s)	62
BstYI	RGATCY	1 cut(s)	62
BsuRI	GGCC	1 cut(s)	505
BtsCI	GGATG	2 cut(s)	153, 213
CaiI	CAGNNNCTG	1 cut(s)	251
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	162
CviAII	CATG	1 cut(s)	20
CviJI	RGCY	8 cut(s)	77, 251, 265, 274, 306, 418, 505, 598
CviKI_1	RGCY	8 cut(s)	77, 251, 265, 274, 306, 418, 505, 598
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	3 cut(s)	66, 252, 259
DpnI	GATC	3 cut(s)	64, 122, 543
DpnII	GATC	3 cut(s)	62, 120, 541
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	500
Eco31I	GGTCTC	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	336
EcoT14I	CCWWGG	1 cut(s)	500
ErhI	CCWWGG	1 cut(s)	500
FaeI	CATG	1 cut(s)	23
FatI	CATG	1 cut(s)	19
FauNDI	CATATG	2 cut(s)	101, 367
FbaI	TGATCA	1 cut(s)	541
FokI	GGATG	2 cut(s)	160, 220
HaeIII	GGCC	1 cut(s)	505
HgaI	GACGC	1 cut(s)	16
Hin1II	CATG	1 cut(s)	23
HinfI	GANTC	1 cut(s)	154
HphI	GGTGA	4 cut(s)	163, 485, 536, 551
Hpy188I	TCNGA	1 cut(s)	355
Hpy188III	TCNNGA	2 cut(s)	52, 124
HpyAV	CCTTC	1 cut(s)	583
HpyCH4III	ACNGT	4 cut(s)	223, 550, 556, 585
HpyCH4IV	ACGT	1 cut(s)	383
HpyCH4V	TGCA	5 cut(s)	29, 95, 245, 404, 449
HpyF10VI	GCNNNNNNNGC	2 cut(s)	271, 502
HpyF3I	CTNAG	3 cut(s)	66, 252, 259
HpySE526I	ACGT	1 cut(s)	383
Hsp92II	CATG	1 cut(s)	23
Ksp22I	TGATCA	1 cut(s)	541
Kzo9I	GATC	3 cut(s)	62, 120, 541
LmnI	GCTCC	3 cut(s)	216, 271, 612
LpnPI	CCDG	6 cut(s)	39, 147, 223, 251, 453, 579
LweI	GCATC	1 cut(s)	391
MaeII	ACGT	1 cut(s)	383
MaeIII	GTNAC	2 cut(s)	151, 550
MalI	GATC	3 cut(s)	64, 122, 543
MboI	GATC	3 cut(s)	62, 120, 541
MboII	GAAGA	5 cut(s)	16, 38, 149, 342, 410
MflI	RGATCY	1 cut(s)	62
MhlI	GDGCHC	1 cut(s)	221
MluCI	AATT	9 cut(s)	36, 87, 107, 185, 331, 391, 422, 451, 607
MlyI	GAGTC	1 cut(s)	148
MnlI	CCTC	3 cut(s)	247, 318, 334
MseI	TTAA	3 cut(s)	39, 534, 594
MslI	CAYNNNNRTG	1 cut(s)	100
MwoI	GCNNNNNNNGC	2 cut(s)	271, 502
NdeI	CATATG	2 cut(s)	101, 367
NdeII	GATC	3 cut(s)	62, 120, 541
NlaIII	CATG	1 cut(s)	23
NmeAIII	GCCGAG	1 cut(s)	53
NmuCI	GTSAC	2 cut(s)	151, 550
PflMI	CCANNNNNTGG	2 cut(s)	203, 512
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
PshBI	ATTAAT	1 cut(s)	39
PstI	CTGCAG	1 cut(s)	31
PstNI	CAGNNNCTG	1 cut(s)	251
PsuI	RGATCY	1 cut(s)	62
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
RseI	CAYNNNNRTG	1 cut(s)	100
SaqAI	TTAA	3 cut(s)	39, 534, 594
Sau3AI	GATC	3 cut(s)	62, 120, 541
SchI	GAGTC	1 cut(s)	148
SduI	GDGCHC	1 cut(s)	221
SetI	ASST	8 cut(s)	72, 253, 258, 267, 276, 386, 594, 600
SfaNI	GCATC	1 cut(s)	391
SfcI	CTRYAG	1 cut(s)	27
SmiMI	CAYNNNNRTG	1 cut(s)	100
Sse9I	AATT	9 cut(s)	36, 87, 107, 185, 331, 391, 422, 451, 607
SspI	AATATT	1 cut(s)	279
StyI	CCWWGG	1 cut(s)	500
TaaI	ACNGT	4 cut(s)	223, 550, 556, 585
TaiI	ACGT	1 cut(s)	386
TaqI	TCGA	1 cut(s)	53
TasI	AATT	9 cut(s)	36, 87, 107, 185, 331, 391, 422, 451, 607
TatI	WGTACW	1 cut(s)	161
Tru1I	TTAA	3 cut(s)	39, 534, 594
Tru9I	TTAA	3 cut(s)	39, 534, 594
TseFI	GTSAC	2 cut(s)	151, 550
Tsp45I	GTSAC	2 cut(s)	151, 550
TspDTI	ATGAA	3 cut(s)	8, 17, 349
Van91I	CCANNNNNTGG	2 cut(s)	203, 512
VspI	ATTAAT	1 cut(s)	39
XapI	RAATTY	3 cut(s)	107, 185, 391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.