RLG00000001152

Transferase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
10955709 .. 10956190
482 bp
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UTR
Exon/CDS
Intron
RLM00000001152

Sequence Viewer

Length: 387 bp
ATGGAAAACCTTATCCAAGATCAAGGAAAACCCAGAGGAGACAAGGATGAAGCTGAGGTCTCAGAATTGGTAGAGCTCATTTTGAACAAAAGGGAAGATGAGAATGACATGATTGAAGAGATGATGGGGAATACTGAGACTAGGGAAAAATCTTTAGACTTCATAGCATATGGGGCAAAACTGATATTTGTGAATTTAGAAGAGATAGAGATTTATGGCCTTGAATTGAGAGGGCAAAAGCCAGTTTATGCAAATTATTCCATTAATGGGGTTGGTGATGAGGGAGTTGTCTTGGTGCTTCCAGGGCCAAAATGTGGTAAGGAGGGAGACGGCATAAATGGTGATCGATCTGTGACTATGGTTCTCCCTAAAAATCAACTTGCATAG

Protein Analysis

129

Amino Acids

14.2

Weight (kDa)

4.39

Isoelectric Point (pI)

32.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24510
fragaria_vesca FvH4_5g34840 FvH4_5g34850
malus_domestica MD08G1199200.v1.1 MD08G1199300.v1.1 MD15G1386300.v1.1 MD15G1386800.v1.1
prunus_persica Prupe.1G533000_v2.0.a1
pyrus_communis pycom08g17310 pycom15g34640 pycom15g34680
rosa_chinensis RchiOBHm_Chr1g0364531 RchiOBHm_Chr4g0415781 RchiOBHm_Chr7g0232591 RchiOBHm_Chr7g0235521 RchiOBHm_Chr7g0235551 RchiOBHm_Chr7g0235561 RchiOBHm_Chr7g0235611 RchiOBHm_Chr7g0235721 RchiOBHm_Chr7g0235771
rosa_laevigata RLG00000001141 RLG00000001147 RLG00000001148 RLG00000001151 RLG00000001152 RLG00000001321 RLG00000029743
rosa_multiflora Rmu_co8320053.1_g000001 Rmu_co8402261.1_g000001 Rmu_co8447535.1_g000001 Rmu_sc0001912.1_g000001 Rmu_sc0001912.1_g000003 Rmu_sc0002617.1_g000016 Rmu_sc0002617.1_g000017 Rmu_sc0002892.1_g000022 Rmu_sc0002892.1_g000023 Rmu_sc0002892.1_g000041 Rmu_sc0002892.1_g000042 Rmu_sc0007994.1_g000006 Rmu_sc0010963.1_g000008 Rmu_sc0011151.1_g000005 Rmu_sc0012467.1_g000003 Rmu_ssc0000471.1_g000012 Rmu_ssc0000471.1_g000013
rosa_roxburghii Rroxscaffold_3G00225680 Rroxscaffold_3G00225800 Rroxscaffold_3G00225870 Rroxscaffold_3G00228130 Rroxscaffold_6G00391050
rosa_rugosa Rorug07G0275200 Rorug07G0291500.1 Rorug07G0292000 Rorug07G0292200 Rorug07G0292500 Rorug07G0295900
rosa_samantha Rh7AG430000 Rh7AG446600 Rh7AG446800 Rh7AG447200 Rh7AG447300 Rh7AG447500 Rh7BG403500 Rh7BG418300 Rh7BG418400 Rh7BG418800 Rh7BG419000 Rh7BG419100 Rh7BG419300 Rh7BG419400 Rh7BG419500 Rh7BG419700 Rh7CG448700 Rh7CG466600 Rh7CG467000 Rh7CG467200 Rh7CG467300 Rh7CG467400 Rh7CG467500 Rh7CG468000 Rh7DG419700 Rh7DG435300 Rh7DG435400 Rh7DG435500 Rh7DG435600 Rh7DG436000 Rh7DG436500
rosa_wichuraiana Rw0G011890 Rw7G035510 Rw7G037080 Rw7G037090 Rw7G037110 Rw7G037180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 314
AcsI RAATTY 1 cut(s) 193
AfiI CCNNNNNNNGG 2 cut(s) 267, 314
AgsI TTSAA 3 cut(s) 85, 116, 224
AjnI CCWGG 1 cut(s) 301
AluBI AGCT 2 cut(s) 53, 76
AluI AGCT 2 cut(s) 53, 76
Alw21I GWGCWC 1 cut(s) 78
Alw26I GTCTC 4 cut(s) 33, 64, 131, 321
AoxI GGCC 2 cut(s) 217, 305
ApoI RAATTY 1 cut(s) 193
AseI ATTAAT 1 cut(s) 264
AspS9I GGNCC 1 cut(s) 305
AsuHPI GGTGA 2 cut(s) 287, 353
BanII GRGCYC 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 78
BbvCI CCTCAGC 1 cut(s) 54
BccI CCATC 1 cut(s) 118
BceAI ACGGC 1 cut(s) 346
BciT130I CCWGG 1 cut(s) 303
BcoDI GTCTC 4 cut(s) 33, 64, 131, 321
BfaI CTAG 1 cut(s) 141
Bme1390I CCNGG 1 cut(s) 303
BmgT120I GGNCC 1 cut(s) 305
BmrFI CCNGG 1 cut(s) 303
Bpu10I CCTNAGC 1 cut(s) 54
Bsa29I ATCGAT 1 cut(s) 346
BsaI GGTCTC 1 cut(s) 64
BsaJI CCNNGG 1 cut(s) 302
Bsc4I CCNNNNNNNGG 2 cut(s) 267, 314
Bse1I ACTGG 1 cut(s) 242
BseBI CCWGG 1 cut(s) 303
BseCI ATCGAT 1 cut(s) 346
BseDI CCNNGG 1 cut(s) 302
BseGI GGATG 1 cut(s) 52
BseLI CCNNNNNNNGG 2 cut(s) 267, 314
BseMII CTCAG 3 cut(s) 45, 75, 126
BseNI ACTGG 1 cut(s) 242
BseRI GAGGAG 1 cut(s) 51
BshFI GGCC 2 cut(s) 219, 307
BshVI ATCGAT 1 cut(s) 346
BsiHKAI GWGCWC 1 cut(s) 78
BslI CCNNNNNNNGG 2 cut(s) 267, 314
BsmAI GTCTC 4 cut(s) 33, 64, 131, 321
BsmBI CGTCTC 1 cut(s) 321
BsnI GGCC 2 cut(s) 219, 307
Bso31I GGTCTC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 78
Bsp143I GATC 3 cut(s) 19, 343, 347
BspANI GGCC 2 cut(s) 219, 307
BspCNI CTCAG 3 cut(s) 46, 74, 127
BspDI ATCGAT 1 cut(s) 346
BspTNI GGTCTC 1 cut(s) 64
BsrI ACTGG 1 cut(s) 242
BssECI CCNNGG 1 cut(s) 302
BssMI GATC 3 cut(s) 19, 343, 347
Bst2UI CCWGG 1 cut(s) 303
Bst6I CTCTTC 2 cut(s) 111, 195
BstDEI CTNAG 3 cut(s) 54, 61, 135
BstF5I GGATG 1 cut(s) 52
BstKTI GATC 3 cut(s) 22, 346, 350
BstMAI GTCTC 4 cut(s) 33, 64, 131, 321
BstMBI GATC 3 cut(s) 19, 343, 347
BstMWI GCNNNNNNNGC 2 cut(s) 173, 304
BstNI CCWGG 1 cut(s) 303
BstSCI CCNGG 1 cut(s) 301
Bsu15I ATCGAT 1 cut(s) 346
BsuRI GGCC 2 cut(s) 219, 307
BsuTUI ATCGAT 1 cut(s) 346
BtsCI GGATG 1 cut(s) 52
Cfr13I GGNCC 1 cut(s) 305
ClaI ATCGAT 1 cut(s) 346
CviAII CATG 1 cut(s) 109
CviJI RGCY 5 cut(s) 53, 76, 219, 241, 307
CviKI_1 RGCY 5 cut(s) 53, 76, 219, 241, 307
DdeI CTNAG 3 cut(s) 54, 61, 135
DpnI GATC 3 cut(s) 21, 345, 349
DpnII GATC 3 cut(s) 19, 343, 347
Eam1104I CTCTTC 2 cut(s) 111, 195
EarI CTCTTC 2 cut(s) 111, 195
Ecl136II GAGCTC 1 cut(s) 76
Eco24I GRGCYC 1 cut(s) 78
Eco31I GGTCTC 1 cut(s) 64
Eco53kI GAGCTC 1 cut(s) 76
EcoICRI GAGCTC 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 301
EcoT38I GRGCYC 1 cut(s) 78
Esp3I CGTCTC 1 cut(s) 321
FaeI CATG 1 cut(s) 112
FaiI YATR 9 cut(s) 110, 164, 169, 171, 216, 249, 335, 359, 385
FatI CATG 1 cut(s) 108
FauNDI CATATG 1 cut(s) 169
FokI GGATG 1 cut(s) 59
FriOI GRGCYC 1 cut(s) 78
FspBI CTAG 1 cut(s) 141
HaeIII GGCC 2 cut(s) 219, 307
Hin1II CATG 1 cut(s) 112
HphI GGTGA 2 cut(s) 287, 353
Hpy188I TCNGA 1 cut(s) 64
HpyCH4V TGCA 2 cut(s) 251, 383
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 304
HpyF3I CTNAG 3 cut(s) 54, 61, 135
Hsp92II CATG 1 cut(s) 112
Kzo9I GATC 3 cut(s) 19, 343, 347
LpnPI CCDG 4 cut(s) 46, 255, 288, 315
MaeI CTAG 1 cut(s) 141
MaeIII GTNAC 1 cut(s) 352
MalI GATC 3 cut(s) 21, 345, 349
MboI GATC 3 cut(s) 19, 343, 347
MboII GAAGA 3 cut(s) 107, 128, 212
MhlI GDGCHC 1 cut(s) 78
MluCI AATT 4 cut(s) 65, 193, 224, 253
MnlI CCTC 5 cut(s) 29, 49, 224, 274, 316
MseI TTAA 1 cut(s) 264
MspR9I CCNGG 1 cut(s) 303
MvaI CCWGG 1 cut(s) 303
MwoI GCNNNNNNNGC 2 cut(s) 173, 304
NdeI CATATG 1 cut(s) 169
NdeII GATC 3 cut(s) 19, 343, 347
NlaIII CATG 1 cut(s) 112
NmuCI GTSAC 1 cut(s) 352
PflMI CCANNNNNTGG 1 cut(s) 314
PshBI ATTAAT 1 cut(s) 264
Psp124BI GAGCTC 1 cut(s) 78
Psp6I CCWGG 1 cut(s) 301
PspGI CCWGG 1 cut(s) 301
PspPI GGNCC 1 cut(s) 305
SacI GAGCTC 1 cut(s) 78
SaqAI TTAA 1 cut(s) 264
Sau3AI GATC 3 cut(s) 19, 343, 347
Sau96I GGNCC 1 cut(s) 305
ScrFI CCNGG 1 cut(s) 303
SduI GDGCHC 1 cut(s) 78
SetI ASST 4 cut(s) 12, 55, 60, 78
Sse9I AATT 4 cut(s) 65, 193, 224, 253
SspMI CTAG 1 cut(s) 141
SstI GAGCTC 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 301
TaqI TCGA 1 cut(s) 346
TasI AATT 4 cut(s) 65, 193, 224, 253
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TseFI GTSAC 1 cut(s) 352
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 2 cut(s) 63, 151
Van91I CCANNNNNTGG 1 cut(s) 314
VspI ATTAAT 1 cut(s) 264
XapI RAATTY 1 cut(s) 193
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.