Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010963.1

Orthogroup ID

OG0000453

Physical Location & Seq

Genomic Coordinates Reverse (-)

26834 .. 30294

Gene Structure 3461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010963.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atggacttggctatgaagctacactacatcaaaggggtctactttttcaacagtgatgcagtcgaggggcttacggtgtttgacttgaagaagcctatgttcatccattttctcccactctacttcgttgccttcaggagaatccgaagatctgaaacaggccggcctttcatcacgtgtaacgacggcggtgtgagaattgtggaggctcgttgtgacgaaacggtcgatgaatggttggccatggctgtggaggatgattctacttttgatggtcttgcttataatcgagcacttggtgaaactggctgtagcacaaggcaagcacaattagataacgggaatgtcgagcaccatcagccggccatcatcccatcagaatccccgaaatcaaccccatttccgcagattctgatcacaacctctcttccacggggtacagtttcactttctctcttgcccgggttttatcccactgcccaagccgtgggattaacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009555 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016053 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048229 GO:0048856 GO:0071704 GO:0072330 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

166

Amino Acids

18.46

Weight (kDa)

5.52

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24510
fragaria_vesca	FvH4_5g34840 FvH4_5g34850
malus_domestica	MD08G1199200.v1.1 MD08G1199300.v1.1 MD15G1386300.v1.1 MD15G1386800.v1.1
prunus_persica	Prupe.1G533000_v2.0.a1
pyrus_communis	pycom08g17310 pycom15g34640 pycom15g34680
rosa_chinensis	RchiOBHm_Chr1g0364531 RchiOBHm_Chr4g0415781 RchiOBHm_Chr7g0232591 RchiOBHm_Chr7g0235521 RchiOBHm_Chr7g0235551 RchiOBHm_Chr7g0235561 RchiOBHm_Chr7g0235611 RchiOBHm_Chr7g0235721 RchiOBHm_Chr7g0235771
rosa_laevigata	RLG00000001141 RLG00000001147 RLG00000001148 RLG00000001151 RLG00000001152 RLG00000001321 RLG00000029743
rosa_multiflora	Rmu_co8320053.1_g000001 Rmu_co8402261.1_g000001 Rmu_co8447535.1_g000001 Rmu_sc0001912.1_g000001 Rmu_sc0001912.1_g000003 Rmu_sc0002617.1_g000016 Rmu_sc0002617.1_g000017 Rmu_sc0002892.1_g000022 Rmu_sc0002892.1_g000023 Rmu_sc0002892.1_g000041 Rmu_sc0002892.1_g000042 Rmu_sc0007994.1_g000006 Rmu_sc0010963.1_g000008 Rmu_sc0011151.1_g000005 Rmu_sc0012467.1_g000003 Rmu_ssc0000471.1_g000012 Rmu_ssc0000471.1_g000013
rosa_roxburghii	Rroxscaffold_3G00225680 Rroxscaffold_3G00225800 Rroxscaffold_3G00225870 Rroxscaffold_3G00228130 Rroxscaffold_6G00391050
rosa_rugosa	Rorug07G0275200 Rorug07G0291500.1 Rorug07G0292000 Rorug07G0292200 Rorug07G0292500 Rorug07G0295900
rosa_samantha	Rh7AG430000 Rh7AG446600 Rh7AG446800 Rh7AG447200 Rh7AG447300 Rh7AG447500 Rh7BG403500 Rh7BG418300 Rh7BG418400 Rh7BG418800 Rh7BG419000 Rh7BG419100 Rh7BG419300 Rh7BG419400 Rh7BG419500 Rh7BG419700 Rh7CG448700 Rh7CG466600 Rh7CG467000 Rh7CG467200 Rh7CG467300 Rh7CG467400 Rh7CG467500 Rh7CG468000 Rh7DG419700 Rh7DG435300 Rh7DG435400 Rh7DG435500 Rh7DG435600 Rh7DG436000 Rh7DG436500
rosa_wichuraiana	Rw0G011890 Rw7G035510 Rw7G037080 Rw7G037090 Rw7G037110 Rw7G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	285
AasI	GACNNNNNNGTC	1 cut(s)	224
AccB7I	CCANNNNNTGG	1 cut(s)	487
AccI	GTMKAC	1 cut(s)	39
AciI	CCGC	2 cut(s)	189, 404
AcoI	YGGCCR	2 cut(s)	240, 363
AcuI	CTGAAG	1 cut(s)	118
AcvI	CACGTG	1 cut(s)	177
AdeI	CACNNNGTG	1 cut(s)	299
AfaI	GTAC	1 cut(s)	439
AfiI	CCNNNNNNNGG	2 cut(s)	361, 487
AflIII	ACRYGT	1 cut(s)	176
AgsI	TTSAA	2 cut(s)	49, 88
AluBI	AGCT	1 cut(s)	19
AluI	AGCT	1 cut(s)	19
Alw21I	GWGCWC	2 cut(s)	295, 354
AlwNI	CAGNNNCTG	1 cut(s)	412
Ama87I	CYCGRG	1 cut(s)	461
AoxI	GGCC	4 cut(s)	160, 164, 240, 363
AsuC2I	CCSGG	2 cut(s)	462, 463
AsuHPI	GGTGA	1 cut(s)	311
AvaI	CYCGRG	1 cut(s)	461
BalI	TGGCCA	1 cut(s)	242
BarI	GAAGNNNNNNTAC	2 cut(s)	8, 40
BbrPI	CACGTG	1 cut(s)	177
Bbv12I	GWGCWC	2 cut(s)	295, 354
BccI	CCATC	4 cut(s)	266, 363, 374, 382
BceAI	ACGGC	2 cut(s)	202, 470
BclI	TGATCA	1 cut(s)	414
BcnI	CCSGG	2 cut(s)	462, 463
BfmI	CTRYAG	1 cut(s)	310
BglII	AGATCT	1 cut(s)	149
Bme1390I	CCNGG	2 cut(s)	462, 463
BmeT110I	CYCGRG	1 cut(s)	461
BmrFI	CCNGG	2 cut(s)	462, 463
BmsI	GCATC	1 cut(s)	46
BpuMI	CCSGG	2 cut(s)	462, 463
BsaAI	YACGTR	1 cut(s)	177
BsaBI	GATNNNNATC	1 cut(s)	413
BsaJI	CCNNGG	4 cut(s)	243, 431, 461, 486
Bsc4I	CCNNNNNNNGG	2 cut(s)	361, 487
Bse118I	RCCGGY	2 cut(s)	162, 361
Bse1I	ACTGG	1 cut(s)	310
Bse8I	GATNNNNATC	1 cut(s)	413
BseDI	CCNNGG	4 cut(s)	243, 431, 461, 486
BseGI	GGATG	3 cut(s)	102, 262, 369
BseJI	GATNNNNATC	1 cut(s)	413
BseLI	CCNNNNNNNGG	2 cut(s)	361, 487
BseNI	ACTGG	1 cut(s)	310
Bsh1285I	CGRYCG	1 cut(s)	228
BshFI	GGCC	4 cut(s)	162, 166, 242, 365
BsiEI	CGRYCG	1 cut(s)	228
BsiHKAI	GWGCWC	2 cut(s)	295, 354
BsiHKCI	CYCGRG	1 cut(s)	461
BsiSI	CCGG	3 cut(s)	163, 362, 462
BslI	CCNNNNNNNGG	2 cut(s)	361, 487
BsnI	GGCC	4 cut(s)	162, 166, 242, 365
BsoBI	CYCGRG	1 cut(s)	461
Bsp1286I	GDGCHC	2 cut(s)	295, 354
Bsp143I	GATC	2 cut(s)	149, 414
Bsp19I	CCATGG	1 cut(s)	243
BspACI	CCGC	2 cut(s)	189, 404
BspANI	GGCC	4 cut(s)	162, 166, 242, 365
BsrFI	RCCGGY	2 cut(s)	162, 361
BsrI	ACTGG	1 cut(s)	310
BssAI	RCCGGY	2 cut(s)	162, 361
BssECI	CCNNGG	4 cut(s)	243, 431, 461, 486
BssMI	GATC	2 cut(s)	149, 414
BssT1I	CCWWGG	1 cut(s)	243
Bst4CI	ACNGT	4 cut(s)	53, 76, 226, 442
Bst6I	CTCTTC	1 cut(s)	432
BstBAI	YACGTR	1 cut(s)	177
BstC8I	GCNNGC	3 cut(s)	164, 324, 363
BstDSI	CCRYGG	3 cut(s)	243, 431, 486
BstF5I	GGATG	3 cut(s)	102, 262, 369
BstKTI	GATC	2 cut(s)	152, 417
BstMBI	GATC	2 cut(s)	149, 414
BstMCI	CGRYCG	1 cut(s)	228
BstMWI	GCNNNNNNNGC	1 cut(s)	358
BstSCI	CCNGG	2 cut(s)	460, 461
BstSFI	CTRYAG	1 cut(s)	310
BstX2I	RGATCY	1 cut(s)	149
BstXI	CCANNNNNNTGG	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	149
BsuRI	GGCC	4 cut(s)	162, 166, 242, 365
BtgI	CCRYGG	3 cut(s)	243, 431, 486
BtsCI	GGATG	3 cut(s)	102, 262, 369
BtsI	GCAGTG	1 cut(s)	474
BtsIMutI	CAGTG	2 cut(s)	58, 474
Cac8I	GCNNGC	3 cut(s)	164, 324, 363
CaiI	CAGNNNCTG	1 cut(s)	412
Cfr10I	RCCGGY	2 cut(s)	162, 361
Cfr9I	CCCGGG	1 cut(s)	461
Csp6I	GTAC	1 cut(s)	438
CviAII	CATG	1 cut(s)	244
CviQI	GTAC	1 cut(s)	438
DpnI	GATC	2 cut(s)	151, 416
DpnII	GATC	2 cut(s)	149, 414
DraIII	CACNNNGTG	1 cut(s)	299
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
EaeI	YGGCCR	2 cut(s)	240, 363
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Eco130I	CCWWGG	1 cut(s)	243
Eco57I	CTGAAG	1 cut(s)	118
Eco72I	CACGTG	1 cut(s)	177
Eco88I	CYCGRG	1 cut(s)	461
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	1 cut(s)	247
FaiI	YATR	4 cut(s)	14, 98, 245, 285
FatI	CATG	1 cut(s)	243
FbaI	TGATCA	1 cut(s)	414
FblI	GTMKAC	1 cut(s)	39
FokI	GGATG	3 cut(s)	89, 269, 356
FseI	GGCCGGCC	1 cut(s)	166
HaeIII	GGCC	4 cut(s)	162, 166, 242, 365
HapII	CCGG	3 cut(s)	163, 362, 462
Hin1II	CATG	1 cut(s)	247
HinfI	GANTC	4 cut(s)	141, 260, 380, 409
HpaII	CCGG	3 cut(s)	163, 362, 462
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	4 cut(s)	146, 154, 379, 414
Hpy188III	TCNNGA	1 cut(s)	136
Hpy8I	GTNNAC	1 cut(s)	40
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	4 cut(s)	53, 76, 226, 442
HpyCH4IV	ACGT	1 cut(s)	176
HpyCH4V	TGCA	1 cut(s)	59
HpyF10VI	GCNNNNNNNGC	1 cut(s)	358
HpySE526I	ACGT	1 cut(s)	176
Hsp92II	CATG	1 cut(s)	247
KroI	GCCGGC	2 cut(s)	162, 361
KroNI	GCCGGC	2 cut(s)	164, 363
Ksp22I	TGATCA	1 cut(s)	414
Kzo9I	GATC	2 cut(s)	149, 414
LpnPI	CCDG	6 cut(s)	121, 144, 176, 291, 375, 475
LweI	GCATC	1 cut(s)	46
MaeII	ACGT	1 cut(s)	176
MaeIII	GTNAC	2 cut(s)	179, 215
MalI	GATC	2 cut(s)	151, 416
MboI	GATC	2 cut(s)	149, 414
MboII	GAAGA	3 cut(s)	100, 159, 419
MflI	RGATCY	1 cut(s)	149
MhlI	GDGCHC	2 cut(s)	295, 354
MlsI	TGGCCA	1 cut(s)	242
MluCI	AATT	2 cut(s)	198, 329
MluNI	TGGCCA	1 cut(s)	242
MnlI	CCTC	4 cut(s)	58, 199, 247, 433
Mox20I	TGGCCA	1 cut(s)	242
MroNI	GCCGGC	2 cut(s)	162, 361
MscI	TGGCCA	1 cut(s)	242
MseI	TTAA	1 cut(s)	494
MslI	CAYNNNNRTG	1 cut(s)	248
Msp20I	TGGCCA	1 cut(s)	242
MspI	CCGG	3 cut(s)	163, 362, 462
MspR9I	CCNGG	2 cut(s)	462, 463
MwoI	GCNNNNNNNGC	1 cut(s)	358
NaeI	GCCGGC	2 cut(s)	164, 363
NciI	CCSGG	2 cut(s)	462, 463
NcoI	CCATGG	1 cut(s)	243
NdeII	GATC	2 cut(s)	149, 414
NgoMIV	GCCGGC	2 cut(s)	162, 361
NlaIII	CATG	1 cut(s)	247
NmuCI	GTSAC	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	2 cut(s)	225, 345
PdiI	GCCGGC	2 cut(s)	164, 363
PfeI	GAWTC	4 cut(s)	141, 260, 380, 409
PflMI	CCANNNNNTGG	1 cut(s)	487
PmaCI	CACGTG	1 cut(s)	177
PmlI	CACGTG	1 cut(s)	177
Ppu21I	YACGTR	1 cut(s)	177
PsiI	TTATAA	1 cut(s)	285
PspCI	CACGTG	1 cut(s)	177
PstNI	CAGNNNCTG	1 cut(s)	412
PsuI	RGATCY	1 cut(s)	149
RigI	GGCCGGCC	1 cut(s)	166
RsaI	GTAC	1 cut(s)	439
RsaNI	GTAC	1 cut(s)	438
RseI	CAYNNNNRTG	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	494
Sau3AI	GATC	2 cut(s)	149, 414
ScrFI	CCNGG	2 cut(s)	462, 463
SduI	GDGCHC	2 cut(s)	295, 354
SetI	ASST	3 cut(s)	21, 179, 425
SfaNI	GCATC	1 cut(s)	46
SfcI	CTRYAG	1 cut(s)	310
SmaI	CCCGGG	1 cut(s)	463
SmiMI	CAYNNNNRTG	1 cut(s)	248
Sse9I	AATT	2 cut(s)	198, 329
SsiI	CCGC	2 cut(s)	189, 404
StyD4I	CCNGG	2 cut(s)	460, 461
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	4 cut(s)	53, 76, 226, 442
TaiI	ACGT	1 cut(s)	179
TaqI	TCGA	4 cut(s)	63, 228, 289, 348
TasI	AATT	2 cut(s)	198, 329
TfiI	GAWTC	4 cut(s)	141, 260, 380, 409
Tru1I	TTAA	1 cut(s)	494
Tru9I	TTAA	1 cut(s)	494
TscAI	CASTG	2 cut(s)	58, 481
TseFI	GTSAC	1 cut(s)	215
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	4 cut(s)	29, 91, 160, 246
TspMI	CCCGGG	1 cut(s)	461
TspRI	CASTG	2 cut(s)	58, 481
Van91I	CCANNNNNTGG	1 cut(s)	487
XmaI	CCCGGG	1 cut(s)	461
XmiI	GTMKAC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.