Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8276251.1

Orthogroup ID

OG0004669

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 682

Gene Structure 681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8276251.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

atgaattatgccgttcctgtatatcagtgtcagagggatacttcttctagcaaagtaccactgtattcatgtactgtcgagattgggggaattcgttatattggagctgcagcaacaaccaaaaaggaagctgagataaaagtggctagaactgctcttctagctctcttgttaagtgatactgagtcatccatgggatcagttggcagctctgagttaacagtgcttccatctaaaagaaagcggtcagaatgtgaagagatttctaatgaacctaaaccaaagaaacccccatataagaggagaacgttcaaaaagaaagcctatgaagaaaaggtgggccagactgaagttggaaatatagcaccaggatcagagagtaatgaatccgttaagccaatgactgcagaagctatgccacaagagccagtgtccgaggatattccccatgctaataatgtcaatgctgaacatgggccgtcaatagcttcagatttcaccaacagcagcattgtgagtgggaatgtgggttcagtttcactgtcctgtggaaacataactactttggccaaggaagtggatatggtgtctgctgttaagccaatgactgcagaagctttgccacaagactcagtgtctgagtatattacccgtgctaataatgtcaacgctgaacatggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006379 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009892 GO:0009954 GO:0009987 GO:0010033 GO:0010051 GO:0010267 GO:0010305 GO:0010445 GO:0010467 GO:0010468 GO:0010589 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0016246 GO:0016441 GO:0016458 GO:0016604 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031053 GO:0031054 GO:0031974 GO:0031981 GO:0032296 GO:0032501 GO:0032502 GO:0033993 GO:0034470 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0035198 GO:0035279 GO:0040029 GO:0042221 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0048856 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0061980 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097305 GO:0098795 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dsrm

Protein Analysis

227

Amino Acids

24.27

Weight (kDa)

5.75

Isoelectric Point (pI)

51.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09700 AT1G09700
fragaria_vesca	FvH4_5g35180 FvH4_5g35180 FvH4_5g35180 FvH4_5g35180 FvH4_5g35180 FvH4_5g35180
malus_domestica	MD15G1387000.v1.1
prunus_persica	Prupe.1G533300_v2.0.a1 Prupe.1G533300_v2.0.a1 Prupe.1G533300_v2.0.a1
pyrus_communis	pycom15g34710
rosa_chinensis	RchiOBHm_Chr7g0236301
rosa_laevigata	RLG00000001089
rosa_multiflora	Rmu_co8276251.1_g000001 Rmu_sc0005716.1_g000008 Rmu_sc0006268.1_g000005
rosa_roxburghii	Rroxscaffold_3G00225270
rosa_rugosa	Rorug07G0295400 Rorug07G0295500 Rorug07G0295600 Rorug07G0295700 Rorug07G0295800 Rorug07G0295900 Rorug07G0295900
rosa_samantha	Rh7AG450500 Rh7BG422000 Rh7CG470200 Rh7DG439500
rosa_wichuraiana	Rw7G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	244
AclI	AACGTT	1 cut(s)	308
AclWI	GGATC	2 cut(s)	205, 379
AcoI	YGGCCR	1 cut(s)	567
AcsI	RAATTY	1 cut(s)	90
AcuI	CTGAAG	2 cut(s)	369, 474
AfaI	GTAC	2 cut(s)	57, 73
AgsI	TTSAA	1 cut(s)	313
AhdI	GACNNNNNGTC	1 cut(s)	634
AjnI	CCWGG	1 cut(s)	367
AloI	GAACNNNNNNTCC	2 cut(s)	514, 546
AluBI	AGCT	7 cut(s)	107, 131, 164, 210, 413, 488, 617
AluI	AGCT	7 cut(s)	107, 131, 164, 210, 413, 488, 617
AlwI	GGATC	2 cut(s)	205, 379
AlwNI	CAGNNNCTG	1 cut(s)	638
AoxI	GGCC	3 cut(s)	340, 476, 567
ApeKI	GCWGC	4 cut(s)	107, 110, 207, 507
ApoI	RAATTY	1 cut(s)	90
AspS9I	GGNCC	2 cut(s)	340, 476
AsuHPI	GGTGA	1 cut(s)	490
BalI	TGGCCA	1 cut(s)	569
BbvI	GCAGC	4 cut(s)	94, 122, 219, 519
BccI	CCATC	1 cut(s)	238
BceAI	ACGGC	1 cut(s)	463
BciT130I	CCWGG	1 cut(s)	369
BciVI	GTATCC	1 cut(s)	31
BfaI	CTAG	3 cut(s)	48, 147, 161
BfmI	CTRYAG	3 cut(s)	108, 405, 609
BfuI	GTATCC	1 cut(s)	31
BisI	GCNGC	4 cut(s)	108, 111, 208, 508
BlsI	GCNGC	4 cut(s)	109, 112, 209, 509
Bme1390I	CCNGG	1 cut(s)	369
BmeRI	GACNNNNNGTC	1 cut(s)	634
BmgT120I	GGNCC	2 cut(s)	340, 476
BmrFI	CCNGG	1 cut(s)	369
BsaJI	CCNNGG	3 cut(s)	192, 435, 570
Bse1I	ACTGG	1 cut(s)	428
BseBI	CCWGG	1 cut(s)	369
BseDI	CCNNGG	3 cut(s)	192, 435, 570
BseGI	GGATG	1 cut(s)	188
BseMII	CTCAG	5 cut(s)	123, 174, 204, 630, 645
BseNI	ACTGG	1 cut(s)	428
BseRI	GAGGAG	1 cut(s)	316
BseXI	GCAGC	4 cut(s)	94, 122, 219, 519
BshFI	GGCC	3 cut(s)	342, 478, 569
BsnI	GGCC	3 cut(s)	342, 478, 569
Bsp143I	GATC	2 cut(s)	197, 371
Bsp19I	CCATGG	1 cut(s)	192
BspACI	CCGC	1 cut(s)	244
BspANI	GGCC	3 cut(s)	342, 478, 569
BspCNI	CTCAG	5 cut(s)	124, 175, 205, 631, 644
BspMAI	CTGCAG	3 cut(s)	112, 409, 613
BspPI	GGATC	2 cut(s)	205, 379
BspQI	GCTCTTC	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	428
BssECI	CCNNGG	3 cut(s)	192, 435, 570
BssMI	GATC	2 cut(s)	197, 371
BssT1I	CCWWGG	2 cut(s)	192, 570
Bst2UI	CCWGG	1 cut(s)	369
Bst4CI	ACNGT	4 cut(s)	63, 76, 223, 543
Bst6I	CTCTTC	2 cut(s)	162, 252
BstDEI	CTNAG	5 cut(s)	132, 183, 213, 631, 639
BstDSI	CCRYGG	1 cut(s)	192
BstF5I	GGATG	1 cut(s)	188
BstKTI	GATC	2 cut(s)	200, 374
BstMBI	GATC	2 cut(s)	197, 371
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 161, 424
BstNI	CCWGG	1 cut(s)	369
BstSCI	CCNGG	1 cut(s)	367
BstSFI	CTRYAG	3 cut(s)	108, 405, 609
BstV1I	GCAGC	4 cut(s)	94, 122, 219, 519
BstXI	CCANNNNNNTGG	1 cut(s)	577
BsuI	GTATCC	1 cut(s)	31
BsuRI	GGCC	3 cut(s)	342, 478, 569
BtgI	CCRYGG	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	188
BtsIMutI	CAGTG	6 cut(s)	32, 59, 228, 435, 539, 639
CaiI	CAGNNNCTG	1 cut(s)	638
Cfr13I	GGNCC	2 cut(s)	340, 476
Csp6I	GTAC	2 cut(s)	56, 72
CviAII	CATG	5 cut(s)	69, 193, 449, 473, 677
CviQI	GTAC	2 cut(s)	56, 72
DdeI	CTNAG	5 cut(s)	132, 183, 213, 631, 639
DpnI	GATC	2 cut(s)	199, 373
DpnII	GATC	2 cut(s)	197, 371
DriI	GACNNNNNGTC	1 cut(s)	634
EaeI	YGGCCR	1 cut(s)	567
Eam1104I	CTCTTC	2 cut(s)	162, 252
Eam1105I	GACNNNNNGTC	1 cut(s)	634
EarI	CTCTTC	2 cut(s)	162, 252
Eco130I	CCWWGG	2 cut(s)	192, 570
Eco57I	CTGAAG	2 cut(s)	369, 474
EcoRI	GAATTC	1 cut(s)	90
EcoRII	CCWGG	1 cut(s)	367
EcoT14I	CCWWGG	2 cut(s)	192, 570
ErhI	CCWWGG	2 cut(s)	192, 570
FaeI	CATG	5 cut(s)	72, 196, 452, 476, 680
FatI	CATG	5 cut(s)	68, 192, 448, 472, 676
Fnu4HI	GCNGC	4 cut(s)	108, 111, 208, 508
FokI	GGATG	1 cut(s)	175
Fsp4HI	GCNGC	4 cut(s)	108, 111, 208, 508
FspBI	CTAG	3 cut(s)	48, 147, 161
GluI	GCNGC	4 cut(s)	108, 111, 208, 508
HaeIII	GGCC	3 cut(s)	342, 478, 569
Hin1II	CATG	5 cut(s)	72, 196, 452, 476, 680
HincII	GTYRAC	2 cut(s)	219, 667
HindII	GTYRAC	2 cut(s)	219, 667
HindIII	AAGCTT	1 cut(s)	615
HinfI	GANTC	3 cut(s)	185, 386, 629
HpaI	GTTAAC	1 cut(s)	219
HphI	GGTGA	1 cut(s)	490
Hpy166II	GTNNAC	2 cut(s)	219, 667
Hpy188I	TCNGA	7 cut(s)	33, 214, 250, 376, 436, 493, 640
Hpy188III	TCNNGA	1 cut(s)	79
Hpy8I	GTNNAC	2 cut(s)	219, 667
HpyCH4III	ACNGT	4 cut(s)	63, 76, 223, 543
HpyCH4IV	ACGT	1 cut(s)	308
HpyCH4V	TGCA	3 cut(s)	110, 407, 611
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 161, 424
HpyF3I	CTNAG	5 cut(s)	132, 183, 213, 631, 639
HpySE526I	ACGT	1 cut(s)	308
Hsp92II	CATG	5 cut(s)	72, 196, 452, 476, 680
KspAI	GTTAAC	1 cut(s)	219
Kzo9I	GATC	2 cut(s)	197, 371
LguI	GCTCTTC	1 cut(s)	162
LmnI	GCTCC	1 cut(s)	104
LpnPI	CCDG	6 cut(s)	30, 354, 356, 381, 441, 559
Lsp1109I	GCAGC	4 cut(s)	94, 122, 219, 519
MaeI	CTAG	3 cut(s)	48, 147, 161
MaeII	ACGT	1 cut(s)	308
MalI	GATC	2 cut(s)	199, 373
MboI	GATC	2 cut(s)	197, 371
MboII	GAAGA	4 cut(s)	36, 149, 269, 341
MlsI	TGGCCA	1 cut(s)	569
MluCI	AATT	2 cut(s)	4, 90
MluNI	TGGCCA	1 cut(s)	569
MlyI	GAGTC	2 cut(s)	194, 623
MmeI	TCCRAC	1 cut(s)	334
MnlI	CCTC	3 cut(s)	27, 294, 430
Mox20I	TGGCCA	1 cut(s)	569
MscI	TGGCCA	1 cut(s)	569
MseI	TTAA	4 cut(s)	173, 218, 393, 597
Msp20I	TGGCCA	1 cut(s)	569
MspR9I	CCNGG	1 cut(s)	369
MvaI	CCWGG	1 cut(s)	369
MwoI	GCNNNNNNNGC	3 cut(s)	152, 161, 424
NcoI	CCATGG	1 cut(s)	192
NdeII	GATC	2 cut(s)	197, 371
NlaIII	CATG	5 cut(s)	72, 196, 452, 476, 680
PciSI	GCTCTTC	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	386
PkrI	GCNGC	4 cut(s)	109, 112, 209, 509
PleI	GAGTC	2 cut(s)	193, 623
PpsI	GAGTC	2 cut(s)	193, 623
Psp1406I	AACGTT	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	367
PspGI	CCWGG	1 cut(s)	367
PspPI	GGNCC	2 cut(s)	340, 476
PstI	CTGCAG	3 cut(s)	112, 409, 613
PstNI	CAGNNNCTG	1 cut(s)	638
RsaI	GTAC	2 cut(s)	57, 73
RsaNI	GTAC	2 cut(s)	56, 72
SapI	GCTCTTC	1 cut(s)	162
SaqAI	TTAA	4 cut(s)	173, 218, 393, 597
SatI	GCNGC	4 cut(s)	108, 111, 208, 508
Sau3AI	GATC	2 cut(s)	197, 371
Sau96I	GGNCC	2 cut(s)	340, 476
SchI	GAGTC	2 cut(s)	194, 623
ScrFI	CCNGG	1 cut(s)	369
SfcI	CTRYAG	3 cut(s)	108, 405, 609
Sse9I	AATT	2 cut(s)	4, 90
SsiI	CCGC	1 cut(s)	244
SspMI	CTAG	3 cut(s)	48, 147, 161
StyD4I	CCNGG	1 cut(s)	367
StyI	CCWWGG	2 cut(s)	192, 570
TaaI	ACNGT	4 cut(s)	63, 76, 223, 543
TaiI	ACGT	1 cut(s)	311
TaqI	TCGA	1 cut(s)	78
TasI	AATT	2 cut(s)	4, 90
TatI	WGTACW	1 cut(s)	71
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	4 cut(s)	173, 218, 393, 597
Tru9I	TTAA	4 cut(s)	173, 218, 393, 597
TscAI	CASTG	6 cut(s)	32, 66, 228, 435, 546, 639
TseI	GCWGC	4 cut(s)	107, 110, 207, 507
TspDTI	ATGAA	5 cut(s)	17, 57, 285, 342, 399
TspGWI	ACGGA	1 cut(s)	379
TspRI	CASTG	6 cut(s)	32, 66, 228, 435, 546, 639
XapI	RAATTY	1 cut(s)	90
XcmI	CCANNNNNNNNNTGG	1 cut(s)	350
XspI	CTAG	3 cut(s)	48, 147, 161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.