Rh7BG422000

Double-stranded RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004669
Physical Location & Seq
Forward (+)
48081038 .. 48085552
4515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG422000.1

Sequence Viewer

Length: 1707 bp
ATGGGAATAAAGACACCAGTATATGAGACTACAAAAGAAGGTCCTTCACATGAGCCTTCCTTCAGGTCTACTGTGATATTAAATGATGTTAGATACGACTCTTTGCTTGGGTTTACTAATCGTAAGGCAGCTGAACAGTCAGCTGCTGAAGTTGCTCTGGTGGAGTTATCTAAATCTGGTGATGCTGCACAATGCATCTCTCAACCTGTTCATGAAATTGGCTTATGCAAAAATCTGCTTCAAGAGTATGCACAGAAGATGAATTATGCTGTTCCTGTATATCAGTGTCAGAGGGATACTTCTTCTAGCAAAGTACCACTGTATTCATGTACTGTCGAGATTGGGGGAATTCGTTATATTGGAGCTGCAGCAACAACCAAAAAGGAATCTGAGATAAAAGTGGCTAGAACTGCTCTTCTAGCTCTCTTGTTAAGTGATACTGAGTCATCCATGGGATCAGTTGGCAGCTCTGAGTTAACAGTGCTTCCATCCAAAAGAAAGCGGTCAGAATGTGAAGAGATTTCTAATGAACCTAAACCAAAGAAACCCCCATATAAGAGGAGAATGTTCAAAAAGAAAGCCTATGAAGAAAAGGTGGGCCAGACTGAAGTTGGAAATATAGCACCAGGATCAGAGAGTAATGAATCCGTTAAGCCAATGACTGCAGAAGCTATGCCACAAGAGCCAGTGTCCGAGGATATTCCCCATGCTAATAATGTCAATGCTGAACATGGGCCGTCAATAGCTTCAGATTTCACCAACAGCAGCATTGTGAGTGGGAACGTGGGTTCAATTTCACTGTCCTGTGGAAACATAACTACTTTGGCCAAGGAAGTGGATATGGTGTCTGCCGTTAAGCCAATGACTGCAGAAGCTTTGCCACAAGACTCAGTGTCCGAGTATATTACCCGTGCTAATAATGGCAACGCTGAACATGGGCTGACAACAGCTTCAGATTTCACCAACAGCAGCAATGGAAGTGGGGATGTGGGTTCAGTTTCACTGTCCTGTGGAAATACAACTGCTTCAGGTAAGGAAGTGAATATGGTGTCTTCTGTTAAGCCAATGACTGCAGGAACTATGCCACAAGATTCAGTGTCTGAGGATATTCCCCATGCTAATAATGTCAATGCTGAACATGGGCTGTCAACAGCTTCAGATTTCACCAACAGCAGCAATGGGAGTGGAGATGTGGGTTCAGTTTCACTGCCCTCTGGAAACATAACTACTTTGGCCAAGGAAGCGGATATGGTGTCTGCCGTTAAGCCAATGACTGCAGAAGCTATGCCACAAGACTCAGTGTCTGAGGATATTCCCCATGCTAATAATGTTAATGCTGAGCCGTCAACAGCTTCAGATTTCACCAACGGCAGCAATGGGAGTTGGGATGTGGGTTCAGTTTCACTGTCCTGCGGAAACACAACTACTTCGGCCAAGGAAGTGAATATGGTTGCTGCTGTTAAGCCAGTGTCTGCAGAAATGATGCCACAAGATTTGGTGTCTGAGGATATTCCCCATGCTAATAATGTGAATGCTGAACATGGGCCGTCAGCAGCTTCAGATTTCACCAACGGCAGCAATGTGAGTGGGGATGTGGGTTCAGTTTCACTGTCCTGTGGAGACACAACTACTTTGGCCAAGGAAGTGAATATGGTGTCTTCTGGACCTTGTTTGGAGGCTTCAAGTGTCATGCCTGGACCTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006379 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009892 GO:0009954 GO:0009987 GO:0010033 GO:0010051 GO:0010267 GO:0010305 GO:0010445 GO:0010467 GO:0010468 GO:0010589 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0016246 GO:0016441 GO:0016458 GO:0016604 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031053 GO:0031054 GO:0031974 GO:0031981 GO:0032296 GO:0032501 GO:0032502 GO:0033993 GO:0034470 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0035198 GO:0035279 GO:0040029 GO:0042221 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0048856 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0061980 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097305 GO:0098795 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
dsrm

Protein Analysis

568

Amino Acids

59.17

Weight (kDa)

4.77

Isoelectric Point (pI)

40.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dsrm PF00035 4 - 53 2.8e-09 Double-stranded RNA binding motif
dsrm PF00035 77 - 141 3e-13 Double-stranded RNA binding motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 68
AciI CCGC 3 cut(s) 502, 1244, 1413
AclWI GGATC 2 cut(s) 463, 637
AcoI YGGCCR 4 cut(s) 825, 1233, 1431, 1635
AcsI RAATTY 1 cut(s) 348
AcuI CTGAAG 9 cut(s) 46, 168, 627, 732, 936, 1011, 1140, 1338, 1542
AfaI GTAC 2 cut(s) 315, 331
AgsI TTSAA 4 cut(s) 242, 571, 792, 1683
AhdI GACNNNNNGTC 2 cut(s) 892, 1300
AjnI CCWGG 2 cut(s) 625, 1693
AloI GAACNNNNNNTCC 2 cut(s) 772, 804
Alw26I GTCTC 2 cut(s) 20, 1614
AlwI GGATC 2 cut(s) 463, 637
AlwNI CAGNNNCTG 4 cut(s) 146, 1100, 1304, 1472
AoxI GGCC 7 cut(s) 598, 734, 825, 1233, 1431, 1544, 1635
ApoI RAATTY 1 cut(s) 348
AspS9I GGNCC 6 cut(s) 41, 598, 734, 1544, 1664, 1697
AsuHPI GGTGA 6 cut(s) 191, 748, 952, 1156, 1354, 1558
AvaII GGWCC 3 cut(s) 41, 1664, 1697
BalI TGGCCA 3 cut(s) 827, 1235, 1637
BbsI GAAGAC 2 cut(s) 1044, 1650
BccI CCATC 1 cut(s) 496
BceAI ACGGC 7 cut(s) 721, 836, 1244, 1327, 1384, 1531, 1588
BciT130I CCWGG 2 cut(s) 627, 1695
BciVI GTATCC 1 cut(s) 289
BcoDI GTCTC 2 cut(s) 20, 1614
BfaI CTAG 3 cut(s) 306, 405, 419
BfmI CTRYAG 6 cut(s) 366, 663, 867, 1071, 1275, 1473
BfuI GTATCC 1 cut(s) 289
BlpI GCTNAGC 1 cut(s) 1338
Bme1390I CCNGG 2 cut(s) 627, 1695
Bme18I GGWCC 3 cut(s) 41, 1664, 1697
BmeRI GACNNNNNGTC 2 cut(s) 892, 1300
BmgT120I GGNCC 6 cut(s) 41, 598, 734, 1544, 1664, 1697
BmrFI CCNGG 2 cut(s) 627, 1695
BmsI GCATC 3 cut(s) 172, 204, 1473
BpiI GAAGAC 2 cut(s) 1044, 1650
Bpu1102I GCTNAGC 1 cut(s) 1338
BsaJI CCNNGG 6 cut(s) 450, 693, 828, 1236, 1434, 1638
Bse1I ACTGG 3 cut(s) 17, 686, 1466
Bse3DI GCAATG 4 cut(s) 979, 1183, 1381, 1585
BseBI CCWGG 2 cut(s) 627, 1695
BseDI CCNNGG 6 cut(s) 450, 693, 828, 1236, 1434, 1638
BseGI GGATG 5 cut(s) 446, 488, 991, 1393, 1597
BseMI GCAATG 4 cut(s) 979, 1183, 1381, 1585
BseMII CTCAG 9 cut(s) 381, 432, 462, 903, 1092, 1296, 1311, 1329, 1494
BseNI ACTGG 3 cut(s) 17, 686, 1466
BseRI GAGGAG 1 cut(s) 574
BsgI GTGCAG 1 cut(s) 171
BshFI GGCC 7 cut(s) 600, 736, 827, 1235, 1433, 1546, 1637
BsmAI GTCTC 2 cut(s) 20, 1614
BsmI GAATGC 1 cut(s) 1537
BsnI GGCC 7 cut(s) 600, 736, 827, 1235, 1433, 1546, 1637
Bsp143I GATC 2 cut(s) 455, 629
Bsp1720I GCTNAGC 1 cut(s) 1338
Bsp19I CCATGG 1 cut(s) 450
BspACI CCGC 3 cut(s) 502, 1244, 1413
BspANI GGCC 7 cut(s) 600, 736, 827, 1235, 1433, 1546, 1637
BspCNI CTCAG 9 cut(s) 382, 433, 463, 902, 1093, 1297, 1310, 1330, 1495
BspHI TCATGA 1 cut(s) 211
BspMAI CTGCAG 6 cut(s) 370, 667, 871, 1075, 1279, 1477
BspPI GGATC 2 cut(s) 463, 637
BspQI GCTCTTC 1 cut(s) 420
BsrDI GCAATG 4 cut(s) 979, 1183, 1381, 1585
BsrI ACTGG 3 cut(s) 17, 686, 1466
BssECI CCNNGG 6 cut(s) 450, 693, 828, 1236, 1434, 1638
BssMI GATC 2 cut(s) 455, 629
BssT1I CCWWGG 5 cut(s) 450, 828, 1236, 1434, 1638
Bst2UI CCWGG 2 cut(s) 627, 1695
Bst4CI ACNGT 9 cut(s) 73, 138, 321, 334, 481, 801, 1005, 1407, 1611
Bst6I CTCTTC 2 cut(s) 420, 510
BstDEI CTNAG 9 cut(s) 390, 441, 471, 889, 1101, 1297, 1305, 1338, 1503
BstDSI CCRYGG 1 cut(s) 450
BstF5I GGATG 5 cut(s) 446, 488, 991, 1393, 1597
BstKTI GATC 2 cut(s) 458, 632
BstMAI GTCTC 2 cut(s) 20, 1614
BstMBI GATC 2 cut(s) 455, 629
BstMWI GCNNNNNNNGC 5 cut(s) 152, 410, 419, 682, 1241
BstNI CCWGG 2 cut(s) 627, 1695
BstSCI CCNGG 2 cut(s) 625, 1693
BstSFI CTRYAG 6 cut(s) 366, 663, 867, 1071, 1275, 1473
BstV2I GAAGAC 2 cut(s) 1044, 1650
BstXI CCANNNNNNTGG 1 cut(s) 835
BsuI GTATCC 1 cut(s) 289
BsuRI GGCC 7 cut(s) 600, 736, 827, 1235, 1433, 1546, 1637
BtgI CCRYGG 1 cut(s) 450
BtsCI GGATG 5 cut(s) 446, 488, 991, 1393, 1597
BtsI GCAGTG 1 cut(s) 1205
CaiI CAGNNNCTG 4 cut(s) 146, 1100, 1304, 1472
CciI TCATGA 1 cut(s) 211
Cfr13I GGNCC 6 cut(s) 41, 598, 734, 1544, 1664, 1697
Csp6I GTAC 2 cut(s) 314, 330
CspCI CAANNNNNGTGG 8 cut(s) 961, 996, 1165, 1200, 1476, 1511, 1567, 1602
CviQI GTAC 2 cut(s) 314, 330
DdeI CTNAG 9 cut(s) 390, 441, 471, 889, 1101, 1297, 1305, 1338, 1503
DpnI GATC 2 cut(s) 457, 631
DpnII GATC 2 cut(s) 455, 629
DriI GACNNNNNGTC 2 cut(s) 892, 1300
EaeI YGGCCR 4 cut(s) 825, 1233, 1431, 1635
Eam1104I CTCTTC 2 cut(s) 420, 510
Eam1105I GACNNNNNGTC 2 cut(s) 892, 1300
EarI CTCTTC 2 cut(s) 420, 510
Eco130I CCWWGG 5 cut(s) 450, 828, 1236, 1434, 1638
Eco47I GGWCC 3 cut(s) 41, 1664, 1697
Eco57I CTGAAG 9 cut(s) 46, 168, 627, 732, 936, 1011, 1140, 1338, 1542
EcoO109I RGGNCCY 1 cut(s) 41
EcoRI GAATTC 1 cut(s) 348
EcoRII CCWGG 2 cut(s) 625, 1693
EcoT14I CCWWGG 5 cut(s) 450, 828, 1236, 1434, 1638
EcoT22I ATGCAT 1 cut(s) 197
ErhI CCWWGG 5 cut(s) 450, 828, 1236, 1434, 1638
FblI GTMKAC 1 cut(s) 68
FokI GGATG 5 cut(s) 433, 475, 998, 1400, 1604
FspBI CTAG 3 cut(s) 306, 405, 419
HaeIII GGCC 7 cut(s) 600, 736, 827, 1235, 1433, 1546, 1637
HincII GTYRAC 3 cut(s) 477, 1149, 1347
HindII GTYRAC 3 cut(s) 477, 1149, 1347
HindIII AAGCTT 1 cut(s) 873
HinfI GANTC 7 cut(s) 98, 386, 443, 644, 887, 1091, 1295
HpaI GTTAAC 1 cut(s) 477
HphI GGTGA 6 cut(s) 191, 748, 952, 1156, 1354, 1558
Hpy166II GTNNAC 5 cut(s) 69, 114, 477, 1149, 1347
Hpy188III TCNNGA 5 cut(s) 212, 242, 337, 1215, 1662
Hpy8I GTNNAC 5 cut(s) 69, 114, 477, 1149, 1347
HpyAV CCTTC 4 cut(s) 32, 54, 66, 70
HpyCH4III ACNGT 9 cut(s) 73, 138, 321, 334, 481, 801, 1005, 1407, 1611
HpyCH4IV ACGT 1 cut(s) 783
HpyF10VI GCNNNNNNNGC 5 cut(s) 152, 410, 419, 682, 1241
HpyF3I CTNAG 9 cut(s) 390, 441, 471, 889, 1101, 1297, 1305, 1338, 1503
HpySE526I ACGT 1 cut(s) 783
KspAI GTTAAC 1 cut(s) 477
Kzo9I GATC 2 cut(s) 455, 629
LguI GCTCTTC 1 cut(s) 420
LmnI GCTCC 1 cut(s) 362
LweI GCATC 3 cut(s) 172, 204, 1473
MaeI CTAG 3 cut(s) 306, 405, 419
MaeII ACGT 1 cut(s) 783
MalI GATC 2 cut(s) 457, 631
MboI GATC 2 cut(s) 455, 629
MboII GAAGA 7 cut(s) 268, 294, 407, 527, 599, 1044, 1650
MlsI TGGCCA 3 cut(s) 827, 1235, 1637
MluCI AATT 4 cut(s) 216, 262, 348, 792
MluNI TGGCCA 3 cut(s) 827, 1235, 1637
MlyI GAGTC 4 cut(s) 92, 452, 881, 1289
MmeI TCCRAC 1 cut(s) 592
MnlI CCTC 8 cut(s) 285, 552, 688, 1096, 1222, 1300, 1498, 1669
Mox20I TGGCCA 3 cut(s) 827, 1235, 1637
Mph1103I ATGCAT 1 cut(s) 197
MscI TGGCCA 3 cut(s) 827, 1235, 1637
MseI TTAA 9 cut(s) 80, 431, 476, 651, 855, 1059, 1263, 1332, 1461
Msp20I TGGCCA 3 cut(s) 827, 1235, 1637
MspA1I CMGCKG 2 cut(s) 131, 143
MspR9I CCNGG 2 cut(s) 627, 1695
Mva1269I GAATGC 1 cut(s) 1537
MvaI CCWGG 2 cut(s) 627, 1695
MwoI GCNNNNNNNGC 5 cut(s) 152, 410, 419, 682, 1241
NcoI CCATGG 1 cut(s) 450
NdeII GATC 2 cut(s) 455, 629
NsiI ATGCAT 1 cut(s) 197
PagI TCATGA 1 cut(s) 211
PciSI GCTCTTC 1 cut(s) 420
PctI GAATGC 1 cut(s) 1537
PfeI GAWTC 3 cut(s) 386, 644, 1091
PleI GAGTC 4 cut(s) 92, 451, 881, 1289
PpsI GAGTC 4 cut(s) 92, 451, 881, 1289
PpuMI RGGWCCY 1 cut(s) 41
Psp5II RGGWCCY 1 cut(s) 41
Psp6I CCWGG 2 cut(s) 625, 1693
PspGI CCWGG 2 cut(s) 625, 1693
PspPI GGNCC 6 cut(s) 41, 598, 734, 1544, 1664, 1697
PspPPI RGGWCCY 1 cut(s) 41
PstI CTGCAG 6 cut(s) 370, 667, 871, 1075, 1279, 1477
PstNI CAGNNNCTG 4 cut(s) 146, 1100, 1304, 1472
PvuII CAGCTG 2 cut(s) 131, 143
RsaI GTAC 2 cut(s) 315, 331
RsaNI GTAC 2 cut(s) 314, 330
SapI GCTCTTC 1 cut(s) 420
SaqAI TTAA 9 cut(s) 80, 431, 476, 651, 855, 1059, 1263, 1332, 1461
Sau3AI GATC 2 cut(s) 455, 629
Sau96I GGNCC 6 cut(s) 41, 598, 734, 1544, 1664, 1697
SchI GAGTC 4 cut(s) 92, 452, 881, 1289
ScrFI CCNGG 2 cut(s) 627, 1695
SfaNI GCATC 3 cut(s) 172, 204, 1473
SfcI CTRYAG 6 cut(s) 366, 663, 867, 1071, 1275, 1473
SinI GGWCC 3 cut(s) 41, 1664, 1697
Sse9I AATT 4 cut(s) 216, 262, 348, 792
SsiI CCGC 3 cut(s) 502, 1244, 1413
SspMI CTAG 3 cut(s) 306, 405, 419
StyD4I CCNGG 2 cut(s) 625, 1693
StyI CCWWGG 5 cut(s) 450, 828, 1236, 1434, 1638
TaaI ACNGT 9 cut(s) 73, 138, 321, 334, 481, 801, 1005, 1407, 1611
TaiI ACGT 1 cut(s) 786
TaqI TCGA 1 cut(s) 336
TasI AATT 4 cut(s) 216, 262, 348, 792
TatI WGTACW 1 cut(s) 329
TfiI GAWTC 3 cut(s) 386, 644, 1091
Tru1I TTAA 9 cut(s) 80, 431, 476, 651, 855, 1059, 1263, 1332, 1461
Tru9I TTAA 9 cut(s) 80, 431, 476, 651, 855, 1059, 1263, 1332, 1461
TspDTI ATGAA 7 cut(s) 200, 228, 275, 315, 543, 600, 657
TspGWI ACGGA 1 cut(s) 637
VpaK11BI GGWCC 3 cut(s) 41, 1664, 1697
XapI RAATTY 1 cut(s) 348
XcmI CCANNNNNNNNNTGG 1 cut(s) 608
XmiI GTMKAC 1 cut(s) 68
XspI CTAG 3 cut(s) 306, 405, 419
Zsp2I ATGCAT 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.