Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006268.1

Orthogroup ID

OG0004669

Physical Location & Seq

Genomic Coordinates Forward (+)

19439 .. 22393

Gene Structure 2955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006268.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

atggctaccaatgcagaatttaaaggtgtttcaaaatgctatgtattcaagagccggttgcaagagtatgcacagaaaatgggaataaagacaccagtatatgagactacaaaagaaggtccttcacatgagccttccttcaggtctactgtgatattaaatgatgttagatacgactctttgcttgggtttactaatcgtaaggcagctgaacagtcagctgctgaagttgctctggtggagttatctaaatctggtgatgctgcacaatgcatctctcaacctgttcatgaaattggcttatgcaaaaatctgcttcaagagtatgcacagaagatgaattatgctgttcctgtatatcagtgtcagagggatacttcttctagcaaagtaccactgtattcatgtactgtcgagattgggggaattcgttatattggagctgcagcaacaaccaaaaaggaagctgagataaaagtggctagaactgctcttctagctctcttgttaagtgatactgagtcatccatgggatcagttggcagctctgagttaacagtgcttccatctaaaagaaagcggtcagaatgtgaagagatttctaatgaacctaaaccaaagaaacccccatataagaggagaacgttcaaaaagaaagcctatgaagaaaaggtgggccagactgaagttggaaatatagcaccaggagcagagagtaatgaacccgttaagccaatgactgcagaagctatgccacaagagccagtgtccgaggatattccccatgctaataatgtcaatgctgaacatgggccgtcaatagcttcagatttcaccaacagcagcattgtgagtgggaatgtgggttcagtttcactgtcctgtggaaacataactactttggccaaggaagtggatatggtgtctgctgttaagccaatgactgcagaagctttgccacaagactcagtgtctgagtatattacccgtgctaataatgtcaacgctgaacatgggctggcaacagcttcagatttcaccaacagcagcaatggaagtggggatgtgggttcagtttcactgtcctgtggaaacacaactgctttgggtaaggaagtgaatatggtgtcttctgttaagccaatgactgcaggaactatgccacggcaacagcttcagatttcaccagcagcagcaatggaagtggggatgtgggttcagtttcactgtcctgtggaaacacaactgcttcgggtaaggaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006379 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009892 GO:0009954 GO:0009987 GO:0010033 GO:0010051 GO:0010267 GO:0010305 GO:0010445 GO:0010467 GO:0010468 GO:0010589 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0016246 GO:0016441 GO:0016458 GO:0016604 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031053 GO:0031054 GO:0031974 GO:0031981 GO:0032296 GO:0032501 GO:0032502 GO:0033993 GO:0034470 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0035198 GO:0035279 GO:0040029 GO:0042221 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0048856 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0061980 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097305 GO:0098795 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dsrm

Protein Analysis

421

Amino Acids

45.26

Weight (kDa)

6.63

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09700 AT1G09700
fragaria_vesca	FvH4_5g35180 FvH4_5g35180 FvH4_5g35180 FvH4_5g35180 FvH4_5g35180 FvH4_5g35180
malus_domestica	MD15G1387000.v1.1
prunus_persica	Prupe.1G533300_v2.0.a1 Prupe.1G533300_v2.0.a1 Prupe.1G533300_v2.0.a1
pyrus_communis	pycom15g34710
rosa_chinensis	RchiOBHm_Chr7g0236301
rosa_laevigata	RLG00000001089
rosa_multiflora	Rmu_co8276251.1_g000001 Rmu_sc0005716.1_g000008 Rmu_sc0006268.1_g000005
rosa_roxburghii	Rroxscaffold_3G00225270
rosa_rugosa	Rorug07G0295400 Rorug07G0295500 Rorug07G0295600 Rorug07G0295700 Rorug07G0295800 Rorug07G0295900 Rorug07G0295900
rosa_samantha	Rh7AG450500 Rh7BG422000 Rh7CG470200 Rh7DG439500
rosa_wichuraiana	Rw7G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	146
AciI	CCGC	1 cut(s)	580
AclI	AACGTT	1 cut(s)	644
AclWI	GGATC	1 cut(s)	541
AcoI	YGGCCR	1 cut(s)	903
AcsI	RAATTY	2 cut(s)	17, 426
AcuI	CTGAAG	6 cut(s)	124, 246, 705, 810, 1014, 1160
AfaI	GTAC	2 cut(s)	393, 409
AgsI	TTSAA	4 cut(s)	33, 49, 320, 649
AhdI	GACNNNNNGTC	1 cut(s)	970
AjnI	CCWGG	1 cut(s)	703
AloI	GAACNNNNNNTCC	2 cut(s)	850, 882
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	1 cut(s)	541
AlwNI	CAGNNNCTG	2 cut(s)	224, 974
AoxI	GGCC	3 cut(s)	676, 812, 903
ApoI	RAATTY	2 cut(s)	17, 426
AspS9I	GGNCC	3 cut(s)	119, 676, 812
AsuHPI	GGTGA	4 cut(s)	269, 826, 1030, 1176
AvaII	GGWCC	1 cut(s)	119
BalI	TGGCCA	1 cut(s)	905
BbsI	GAAGAC	1 cut(s)	1122
BccI	CCATC	1 cut(s)	574
BceAI	ACGGC	2 cut(s)	799, 1181
BciT130I	CCWGG	1 cut(s)	705
BciVI	GTATCC	1 cut(s)	367
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	3 cut(s)	384, 483, 497
BfmI	CTRYAG	4 cut(s)	444, 741, 945, 1149
BfuI	GTATCC	1 cut(s)	367
Bme1390I	CCNGG	1 cut(s)	705
Bme18I	GGWCC	1 cut(s)	119
BmeRI	GACNNNNNGTC	1 cut(s)	970
BmgT120I	GGNCC	3 cut(s)	119, 676, 812
BmrFI	CCNGG	1 cut(s)	705
BmsI	GCATC	2 cut(s)	250, 282
BpiI	GAAGAC	1 cut(s)	1122
BsaJI	CCNNGG	4 cut(s)	528, 771, 906, 1163
Bse118I	RCCGGY	1 cut(s)	54
Bse1I	ACTGG	2 cut(s)	95, 764
Bse3DI	GCAATG	2 cut(s)	1057, 1203
BseBI	CCWGG	1 cut(s)	705
BseDI	CCNNGG	4 cut(s)	528, 771, 906, 1163
BseGI	GGATG	3 cut(s)	524, 1069, 1215
BseMI	GCAATG	2 cut(s)	1057, 1203
BseMII	CTCAG	5 cut(s)	459, 510, 540, 966, 981
BseNI	ACTGG	2 cut(s)	95, 764
BseRI	GAGGAG	1 cut(s)	652
BsgI	GTGCAG	1 cut(s)	249
BshFI	GGCC	3 cut(s)	678, 814, 905
BsiSI	CCGG	1 cut(s)	55
BsmAI	GTCTC	1 cut(s)	98
BsnI	GGCC	3 cut(s)	678, 814, 905
Bsp143I	GATC	1 cut(s)	533
Bsp19I	CCATGG	1 cut(s)	528
BspACI	CCGC	1 cut(s)	580
BspANI	GGCC	3 cut(s)	678, 814, 905
BspCNI	CTCAG	5 cut(s)	460, 511, 541, 967, 980
BspHI	TCATGA	1 cut(s)	289
BspMAI	CTGCAG	4 cut(s)	448, 745, 949, 1153
BspPI	GGATC	1 cut(s)	541
BspQI	GCTCTTC	1 cut(s)	498
BsrDI	GCAATG	2 cut(s)	1057, 1203
BsrFI	RCCGGY	1 cut(s)	54
BsrI	ACTGG	2 cut(s)	95, 764
BssAI	RCCGGY	1 cut(s)	54
BssECI	CCNNGG	4 cut(s)	528, 771, 906, 1163
BssMI	GATC	1 cut(s)	533
BssT1I	CCWWGG	2 cut(s)	528, 906
Bst2UI	CCWGG	1 cut(s)	705
Bst4CI	ACNGT	8 cut(s)	151, 216, 399, 412, 559, 879, 1083, 1229
Bst6I	CTCTTC	2 cut(s)	498, 588
BstC8I	GCNNGC	1 cut(s)	1020
BstDEI	CTNAG	5 cut(s)	468, 519, 549, 967, 975
BstDSI	CCRYGG	2 cut(s)	528, 1163
BstF5I	GGATG	3 cut(s)	524, 1069, 1215
BstKTI	GATC	1 cut(s)	536
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	1 cut(s)	533
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 230, 488, 497, 707, 760
BstNI	CCWGG	1 cut(s)	705
BstSCI	CCNGG	1 cut(s)	703
BstSFI	CTRYAG	4 cut(s)	444, 741, 945, 1149
BstV2I	GAAGAC	1 cut(s)	1122
BstXI	CCANNNNNNTGG	1 cut(s)	913
BsuI	GTATCC	1 cut(s)	367
BsuRI	GGCC	3 cut(s)	678, 814, 905
BtgI	CCRYGG	2 cut(s)	528, 1163
BtsCI	GGATG	3 cut(s)	524, 1069, 1215
BtsIMutI	CAGTG	8 cut(s)	368, 395, 564, 771, 875, 975, 1079, 1225
Cac8I	GCNNGC	1 cut(s)	1020
CaiI	CAGNNNCTG	2 cut(s)	224, 974
CciI	TCATGA	1 cut(s)	289
Cfr10I	RCCGGY	1 cut(s)	54
Cfr13I	GGNCC	3 cut(s)	119, 676, 812
Csp6I	GTAC	2 cut(s)	392, 408
CspCI	CAANNNNNGTGG	4 cut(s)	1039, 1074, 1185, 1220
CviAII	CATG	7 cut(s)	128, 290, 405, 529, 785, 809, 1013
CviQI	GTAC	2 cut(s)	392, 408
DdeI	CTNAG	5 cut(s)	468, 519, 549, 967, 975
DpnI	GATC	1 cut(s)	535
DpnII	GATC	1 cut(s)	533
DraI	TTTAAA	1 cut(s)	22
DriI	GACNNNNNGTC	1 cut(s)	970
EaeI	YGGCCR	1 cut(s)	903
Eam1104I	CTCTTC	2 cut(s)	498, 588
Eam1105I	GACNNNNNGTC	1 cut(s)	970
EarI	CTCTTC	2 cut(s)	498, 588
Eco130I	CCWWGG	2 cut(s)	528, 906
Eco47I	GGWCC	1 cut(s)	119
Eco57I	CTGAAG	6 cut(s)	124, 246, 705, 810, 1014, 1160
EcoO109I	RGGNCCY	1 cut(s)	119
EcoRI	GAATTC	1 cut(s)	426
EcoRII	CCWGG	1 cut(s)	703
EcoT14I	CCWWGG	2 cut(s)	528, 906
EcoT22I	ATGCAT	1 cut(s)	275
ErhI	CCWWGG	2 cut(s)	528, 906
FaeI	CATG	7 cut(s)	131, 293, 408, 532, 788, 812, 1016
FatI	CATG	7 cut(s)	127, 289, 404, 528, 784, 808, 1012
FblI	GTMKAC	1 cut(s)	146
FokI	GGATG	3 cut(s)	511, 1076, 1222
FspBI	CTAG	3 cut(s)	384, 483, 497
HaeIII	GGCC	3 cut(s)	678, 814, 905
HapII	CCGG	1 cut(s)	55
Hin1II	CATG	7 cut(s)	131, 293, 408, 532, 788, 812, 1016
HincII	GTYRAC	2 cut(s)	555, 1003
HindII	GTYRAC	2 cut(s)	555, 1003
HindIII	AAGCTT	1 cut(s)	951
HinfI	GANTC	3 cut(s)	176, 521, 965
HpaI	GTTAAC	1 cut(s)	555
HpaII	CCGG	1 cut(s)	55
HphI	GGTGA	4 cut(s)	269, 826, 1030, 1176
Hpy166II	GTNNAC	4 cut(s)	147, 192, 555, 1003
Hpy188I	TCNGA	8 cut(s)	369, 550, 586, 772, 829, 976, 1033, 1179
Hpy188III	TCNNGA	4 cut(s)	49, 290, 320, 415
Hpy8I	GTNNAC	4 cut(s)	147, 192, 555, 1003
HpyAV	CCTTC	4 cut(s)	110, 132, 144, 148
HpyCH4III	ACNGT	8 cut(s)	151, 216, 399, 412, 559, 879, 1083, 1229
HpyCH4IV	ACGT	1 cut(s)	644
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 230, 488, 497, 707, 760
HpyF3I	CTNAG	5 cut(s)	468, 519, 549, 967, 975
HpySE526I	ACGT	1 cut(s)	644
Hsp92II	CATG	7 cut(s)	131, 293, 408, 532, 788, 812, 1016
KspAI	GTTAAC	1 cut(s)	555
Kzo9I	GATC	1 cut(s)	533
LguI	GCTCTTC	1 cut(s)	498
LmnI	GCTCC	2 cut(s)	440, 707
LweI	GCATC	2 cut(s)	250, 282
MaeI	CTAG	3 cut(s)	384, 483, 497
MaeII	ACGT	1 cut(s)	644
MalI	GATC	1 cut(s)	535
MboI	GATC	1 cut(s)	533
MboII	GAAGA	6 cut(s)	346, 372, 485, 605, 677, 1122
MlsI	TGGCCA	1 cut(s)	905
MluCI	AATT	4 cut(s)	17, 294, 340, 426
MluNI	TGGCCA	1 cut(s)	905
MlyI	GAGTC	3 cut(s)	170, 530, 959
MmeI	TCCRAC	1 cut(s)	670
MnlI	CCTC	3 cut(s)	363, 630, 766
Mox20I	TGGCCA	1 cut(s)	905
Mph1103I	ATGCAT	1 cut(s)	275
MscI	TGGCCA	1 cut(s)	905
MseI	TTAA	7 cut(s)	21, 158, 509, 554, 729, 933, 1137
Msp20I	TGGCCA	1 cut(s)	905
MspA1I	CMGCKG	2 cut(s)	209, 221
MspI	CCGG	1 cut(s)	55
MspR9I	CCNGG	1 cut(s)	705
MvaI	CCWGG	1 cut(s)	705
MwoI	GCNNNNNNNGC	6 cut(s)	11, 230, 488, 497, 707, 760
NcoI	CCATGG	1 cut(s)	528
NdeII	GATC	1 cut(s)	533
NlaIII	CATG	7 cut(s)	131, 293, 408, 532, 788, 812, 1016
NsiI	ATGCAT	1 cut(s)	275
PagI	TCATGA	1 cut(s)	289
PciSI	GCTCTTC	1 cut(s)	498
PleI	GAGTC	3 cut(s)	170, 529, 959
PpsI	GAGTC	3 cut(s)	170, 529, 959
PpuMI	RGGWCCY	1 cut(s)	119
Psp1406I	AACGTT	1 cut(s)	644
Psp5II	RGGWCCY	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	703
PspGI	CCWGG	1 cut(s)	703
PspPI	GGNCC	3 cut(s)	119, 676, 812
PspPPI	RGGWCCY	1 cut(s)	119
PstI	CTGCAG	4 cut(s)	448, 745, 949, 1153
PstNI	CAGNNNCTG	2 cut(s)	224, 974
PvuII	CAGCTG	2 cut(s)	209, 221
RsaI	GTAC	2 cut(s)	393, 409
RsaNI	GTAC	2 cut(s)	392, 408
SapI	GCTCTTC	1 cut(s)	498
SaqAI	TTAA	7 cut(s)	21, 158, 509, 554, 729, 933, 1137
Sau3AI	GATC	1 cut(s)	533
Sau96I	GGNCC	3 cut(s)	119, 676, 812
SchI	GAGTC	3 cut(s)	170, 530, 959
ScrFI	CCNGG	1 cut(s)	705
SfaNI	GCATC	2 cut(s)	250, 282
SfcI	CTRYAG	4 cut(s)	444, 741, 945, 1149
SinI	GGWCC	1 cut(s)	119
Sse9I	AATT	4 cut(s)	17, 294, 340, 426
SsiI	CCGC	1 cut(s)	580
SspMI	CTAG	3 cut(s)	384, 483, 497
StyD4I	CCNGG	1 cut(s)	703
StyI	CCWWGG	2 cut(s)	528, 906
TaaI	ACNGT	8 cut(s)	151, 216, 399, 412, 559, 879, 1083, 1229
TaiI	ACGT	1 cut(s)	647
TaqI	TCGA	1 cut(s)	414
TasI	AATT	4 cut(s)	17, 294, 340, 426
TatI	WGTACW	1 cut(s)	407
Tru1I	TTAA	7 cut(s)	21, 158, 509, 554, 729, 933, 1137
Tru9I	TTAA	7 cut(s)	21, 158, 509, 554, 729, 933, 1137
TscAI	CASTG	8 cut(s)	368, 402, 564, 771, 882, 975, 1086, 1232
TspDTI	ATGAA	7 cut(s)	278, 306, 353, 393, 621, 678, 735
TspRI	CASTG	8 cut(s)	368, 402, 564, 771, 882, 975, 1086, 1232
VpaK11BI	GGWCC	1 cut(s)	119
XapI	RAATTY	2 cut(s)	17, 426
XcmI	CCANNNNNNNNNTGG	1 cut(s)	686
XmiI	GTMKAC	1 cut(s)	146
XspI	CTAG	3 cut(s)	384, 483, 497
Zsp2I	ATGCAT	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.