Rh7DG439500

Double-stranded RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0004669
Physical Location & Seq
Forward (+)
62525341 .. 62529657
4317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG439500.1

Sequence Viewer

Length: 1449 bp
ATGAATTATGCCGTTCCTGTATATCAGTGTCAGAGGGATACTTCTTCTAGCAAAGTACCACTGTATTCATGTACTGTCGAGATTGGGGGAATTCGTTATATTGGAGCTGCAGCAACAACCAAAAAGGAAGCTGAGATAAAAGTGGCTAGAACTGCTCTTCTAGCTCTCTTGTTAAGTGATACTGAGTCATCCATGGGATCAGTTGGCAGCTCTGAGTTAACAGTGCTTCCATCTAAAAGAAAGCGGTCAGAATGTGAAGAGATTTCTAATGAACCTAAACCAAAGAAACCCCCATATAAGAGGAGAACGTTCAAAAAGAAAGCCTATGAAGAAAAGGTGGGCCAGACTGAAGTTGGAAATATAGCACCAGGATCAGAGAGTAATGAATCCGTTAAGCCAATGACTGCAGAAGCTATGCCACAAGAGCCAGTGTCCGAGGATATTCCCCATGCTAATAATGTCAATGCTGAACATGGGCCGTCAATAGCTTCAGATTTCACCAACAGCAGCATTGTGAGTGGGAATGTGGGTTCAGTTTCACTGTCCTGTGGAAACATAACTACTTTGGCCAAGGAAGTGGATATGGTGTCTGCTGTTAAGCCAATGACTGCAGAAGCTTTGCCACAAGACTCAGTGTCTGAGTATATTACCCGTGCTAATAATGTCAATGCTGAACATGGGCTGGCAACAGCTTCAGATTTCACCAACAGCAGCAATGGAAGTGGGGATGTGGGTTCAGTTTCACTGTCCTGTGGAAACACAACTGCTTTGGGTAAGGAAGTGAATATGGTGTCTTCTGTTAAGCCAATGACTGCAGGAACTATGCCACAAGATACAGTGTCTGAGGATATTCCCCATGCTAATAATGTCAATGCTGAACATGGGCTGTCAACAGCTTCAGATTTCACCAACAGCAGCAATGGGAGTGGAGATGTGGGTTCAGTTTCACTGCCCTCTGGAAACATAACTACTTTGGCCAAGGAAGCGGATATGGTGTCTGCCGTTAAGCCAATGACTGCAGAAGCTATGCCACAAGACTCAGTGTCTGAGGATATTCCCCATGCTAATAATGTTAATACTGAGCAGTCAACAGCTTCAGATTTCACCAATGGCAGCAATGGGAGTTGGGATGGGGGTTCAGTTTCACTGTCCTGCGGAAACACAACTACTTCGGCCAAGGAAGTGAATATGGTTGCTGCTGTTAAGCCAGTGTCTGCAGAAATGATGCCACAAGATTCGGTCTCTGAGGATATTCCCCATGCTAATAATGTGAATGCTGAACATGGGCCGTCAGCAGCTTCAGATTTCACTAACGGCAGCAATGTGAGTGGGGATGTGGGTTCAGTTTCACTGTCCTCTGGAGACATAACTACTTCGGCCAAGGAAGTGAATATGGTGTCATCTGGACCTTGTTTGGAGGCTTCAAGTGTCATGCCTGGACCTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006379 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009892 GO:0009954 GO:0009987 GO:0010033 GO:0010051 GO:0010267 GO:0010305 GO:0010445 GO:0010467 GO:0010468 GO:0010589 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0016246 GO:0016441 GO:0016458 GO:0016604 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031053 GO:0031054 GO:0031974 GO:0031981 GO:0032296 GO:0032501 GO:0032502 GO:0033993 GO:0034470 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0035198 GO:0035279 GO:0040029 GO:0042221 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0048856 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0061980 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097305 GO:0098795 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
dsrm

Protein Analysis

482

Amino Acids

49.73

Weight (kDa)

4.66

Isoelectric Point (pI)

39.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dsrm PF00035 5 - 55 1.7e-07 Double-stranded RNA binding motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 244, 986, 1155
AclI AACGTT 1 cut(s) 308
AclWI GGATC 2 cut(s) 205, 379
AcoI YGGCCR 4 cut(s) 567, 975, 1173, 1377
AcsI RAATTY 1 cut(s) 90
AcuI CTGAAG 6 cut(s) 369, 474, 678, 882, 1080, 1284
AfaI GTAC 2 cut(s) 57, 73
AgsI TTSAA 2 cut(s) 313, 1425
AhdI GACNNNNNGTC 2 cut(s) 634, 1042
AjnI CCWGG 2 cut(s) 367, 1435
AloI GAACNNNNNNTCC 2 cut(s) 514, 546
Alw26I GTCTC 2 cut(s) 1246, 1356
AlwI GGATC 2 cut(s) 205, 379
AlwNI CAGNNNCTG 4 cut(s) 638, 842, 1046, 1214
AoxI GGCC 7 cut(s) 340, 476, 567, 975, 1173, 1286, 1377
ApoI RAATTY 1 cut(s) 90
AspS9I GGNCC 5 cut(s) 340, 476, 1286, 1406, 1439
AsuHPI GGTGA 4 cut(s) 490, 694, 898, 1096
AvaII GGWCC 2 cut(s) 1406, 1439
BalI TGGCCA 2 cut(s) 569, 977
BbsI GAAGAC 1 cut(s) 786
BccI CCATC 2 cut(s) 238, 1124
BceAI ACGGC 4 cut(s) 463, 986, 1273, 1330
BciT130I CCWGG 2 cut(s) 369, 1437
BciVI GTATCC 1 cut(s) 31
BcoDI GTCTC 2 cut(s) 1246, 1356
BfaI CTAG 3 cut(s) 48, 147, 161
BfmI CTRYAG 6 cut(s) 108, 405, 609, 813, 1017, 1215
BfuI GTATCC 1 cut(s) 31
Bme1390I CCNGG 2 cut(s) 369, 1437
Bme18I GGWCC 2 cut(s) 1406, 1439
BmeRI GACNNNNNGTC 2 cut(s) 634, 1042
BmgT120I GGNCC 5 cut(s) 340, 476, 1286, 1406, 1439
BmrFI CCNGG 2 cut(s) 369, 1437
BmsI GCATC 1 cut(s) 1215
BpiI GAAGAC 1 cut(s) 786
BpmI CTGGAG 1 cut(s) 1380
BsaI GGTCTC 1 cut(s) 1246
BsaJI CCNNGG 6 cut(s) 192, 435, 570, 978, 1176, 1380
Bse1I ACTGG 2 cut(s) 428, 1208
Bse3DI GCAATG 4 cut(s) 721, 925, 1123, 1327
BseBI CCWGG 2 cut(s) 369, 1437
BseDI CCNNGG 6 cut(s) 192, 435, 570, 978, 1176, 1380
BseGI GGATG 4 cut(s) 188, 733, 1135, 1339
BseMI GCAATG 4 cut(s) 721, 925, 1123, 1327
BseNI ACTGG 2 cut(s) 428, 1208
BseRI GAGGAG 1 cut(s) 316
BshFI GGCC 7 cut(s) 342, 478, 569, 977, 1175, 1288, 1379
BsmAI GTCTC 2 cut(s) 1246, 1356
BsmI GAATGC 1 cut(s) 1279
BsnI GGCC 7 cut(s) 342, 478, 569, 977, 1175, 1288, 1379
Bso31I GGTCTC 1 cut(s) 1246
Bsp143I GATC 2 cut(s) 197, 371
Bsp19I CCATGG 1 cut(s) 192
BspACI CCGC 3 cut(s) 244, 986, 1155
BspANI GGCC 7 cut(s) 342, 478, 569, 977, 1175, 1288, 1379
BspMAI CTGCAG 6 cut(s) 112, 409, 613, 817, 1021, 1219
BspPI GGATC 2 cut(s) 205, 379
BspQI GCTCTTC 1 cut(s) 162
BspTNI GGTCTC 1 cut(s) 1246
BsrDI GCAATG 4 cut(s) 721, 925, 1123, 1327
BsrI ACTGG 2 cut(s) 428, 1208
BssECI CCNNGG 6 cut(s) 192, 435, 570, 978, 1176, 1380
BssMI GATC 2 cut(s) 197, 371
BssT1I CCWWGG 5 cut(s) 192, 570, 978, 1176, 1380
Bst2UI CCWGG 2 cut(s) 369, 1437
Bst4CI ACNGT 8 cut(s) 63, 76, 223, 543, 747, 838, 1149, 1353
Bst6I CTCTTC 2 cut(s) 162, 252
BstC8I GCNNGC 1 cut(s) 684
BstDSI CCRYGG 1 cut(s) 192
BstF5I GGATG 4 cut(s) 188, 733, 1135, 1339
BstKTI GATC 2 cut(s) 200, 374
BstMAI GTCTC 2 cut(s) 1246, 1356
BstMBI GATC 2 cut(s) 197, 371
BstMWI GCNNNNNNNGC 4 cut(s) 152, 161, 424, 983
BstNI CCWGG 2 cut(s) 369, 1437
BstSCI CCNGG 2 cut(s) 367, 1435
BstSFI CTRYAG 6 cut(s) 108, 405, 609, 813, 1017, 1215
BstV2I GAAGAC 1 cut(s) 786
BstXI CCANNNNNNTGG 1 cut(s) 577
BsuI GTATCC 1 cut(s) 31
BsuRI GGCC 7 cut(s) 342, 478, 569, 977, 1175, 1288, 1379
BtgI CCRYGG 1 cut(s) 192
BtsCI GGATG 4 cut(s) 188, 733, 1135, 1339
BtsI GCAGTG 1 cut(s) 947
Cac8I GCNNGC 1 cut(s) 684
CaiI CAGNNNCTG 4 cut(s) 638, 842, 1046, 1214
Cfr13I GGNCC 5 cut(s) 340, 476, 1286, 1406, 1439
Csp6I GTAC 2 cut(s) 56, 72
CspCI CAANNNNNGTGG 6 cut(s) 703, 738, 907, 942, 1309, 1344
CviQI GTAC 2 cut(s) 56, 72
DpnI GATC 2 cut(s) 199, 373
DpnII GATC 2 cut(s) 197, 371
DriI GACNNNNNGTC 2 cut(s) 634, 1042
EaeI YGGCCR 4 cut(s) 567, 975, 1173, 1377
Eam1104I CTCTTC 2 cut(s) 162, 252
Eam1105I GACNNNNNGTC 2 cut(s) 634, 1042
EarI CTCTTC 2 cut(s) 162, 252
Eco130I CCWWGG 5 cut(s) 192, 570, 978, 1176, 1380
Eco31I GGTCTC 1 cut(s) 1246
Eco47I GGWCC 2 cut(s) 1406, 1439
Eco57I CTGAAG 6 cut(s) 369, 474, 678, 882, 1080, 1284
EcoRI GAATTC 1 cut(s) 90
EcoRII CCWGG 2 cut(s) 367, 1435
EcoT14I CCWWGG 5 cut(s) 192, 570, 978, 1176, 1380
ErhI CCWWGG 5 cut(s) 192, 570, 978, 1176, 1380
FokI GGATG 4 cut(s) 175, 740, 1142, 1346
FspBI CTAG 3 cut(s) 48, 147, 161
GsuI CTGGAG 1 cut(s) 1380
HaeIII GGCC 7 cut(s) 342, 478, 569, 977, 1175, 1288, 1379
HincII GTYRAC 3 cut(s) 219, 891, 1089
HindII GTYRAC 3 cut(s) 219, 891, 1089
HindIII AAGCTT 1 cut(s) 615
HinfI GANTC 5 cut(s) 185, 386, 629, 1037, 1235
HpaI GTTAAC 1 cut(s) 219
HphI GGTGA 4 cut(s) 490, 694, 898, 1096
Hpy166II GTNNAC 3 cut(s) 219, 891, 1089
Hpy188III TCNNGA 4 cut(s) 79, 957, 1359, 1404
Hpy8I GTNNAC 3 cut(s) 219, 891, 1089
HpyCH4III ACNGT 8 cut(s) 63, 76, 223, 543, 747, 838, 1149, 1353
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 6 cut(s) 110, 407, 611, 815, 1019, 1217
HpyF10VI GCNNNNNNNGC 4 cut(s) 152, 161, 424, 983
HpySE526I ACGT 1 cut(s) 308
KspAI GTTAAC 1 cut(s) 219
Kzo9I GATC 2 cut(s) 197, 371
LguI GCTCTTC 1 cut(s) 162
LmnI GCTCC 1 cut(s) 104
LweI GCATC 1 cut(s) 1215
MaeI CTAG 3 cut(s) 48, 147, 161
MaeII ACGT 1 cut(s) 308
MalI GATC 2 cut(s) 199, 373
MboI GATC 2 cut(s) 197, 371
MboII GAAGA 5 cut(s) 36, 149, 269, 341, 786
MlsI TGGCCA 2 cut(s) 569, 977
MluCI AATT 2 cut(s) 4, 90
MluNI TGGCCA 2 cut(s) 569, 977
MlyI GAGTC 3 cut(s) 194, 623, 1031
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 9 cut(s) 27, 294, 430, 838, 964, 1042, 1240, 1366, 1411
Mox20I TGGCCA 2 cut(s) 569, 977
MscI TGGCCA 2 cut(s) 569, 977
MseI TTAA 8 cut(s) 173, 218, 393, 597, 801, 1005, 1074, 1203
Msp20I TGGCCA 2 cut(s) 569, 977
MspR9I CCNGG 2 cut(s) 369, 1437
Mva1269I GAATGC 1 cut(s) 1279
MvaI CCWGG 2 cut(s) 369, 1437
MwoI GCNNNNNNNGC 4 cut(s) 152, 161, 424, 983
NcoI CCATGG 1 cut(s) 192
NdeII GATC 2 cut(s) 197, 371
PciSI GCTCTTC 1 cut(s) 162
PctI GAATGC 1 cut(s) 1279
PfeI GAWTC 2 cut(s) 386, 1235
PleI GAGTC 3 cut(s) 193, 623, 1031
PpsI GAGTC 3 cut(s) 193, 623, 1031
Psp1406I AACGTT 1 cut(s) 308
Psp6I CCWGG 2 cut(s) 367, 1435
PspGI CCWGG 2 cut(s) 367, 1435
PspPI GGNCC 5 cut(s) 340, 476, 1286, 1406, 1439
PstI CTGCAG 6 cut(s) 112, 409, 613, 817, 1021, 1219
PstNI CAGNNNCTG 4 cut(s) 638, 842, 1046, 1214
RsaI GTAC 2 cut(s) 57, 73
RsaNI GTAC 2 cut(s) 56, 72
SapI GCTCTTC 1 cut(s) 162
SaqAI TTAA 8 cut(s) 173, 218, 393, 597, 801, 1005, 1074, 1203
Sau3AI GATC 2 cut(s) 197, 371
Sau96I GGNCC 5 cut(s) 340, 476, 1286, 1406, 1439
SchI GAGTC 3 cut(s) 194, 623, 1031
ScrFI CCNGG 2 cut(s) 369, 1437
SfaNI GCATC 1 cut(s) 1215
SfcI CTRYAG 6 cut(s) 108, 405, 609, 813, 1017, 1215
SinI GGWCC 2 cut(s) 1406, 1439
Sse9I AATT 2 cut(s) 4, 90
SsiI CCGC 3 cut(s) 244, 986, 1155
SspMI CTAG 3 cut(s) 48, 147, 161
StyD4I CCNGG 2 cut(s) 367, 1435
StyI CCWWGG 5 cut(s) 192, 570, 978, 1176, 1380
TaaI ACNGT 8 cut(s) 63, 76, 223, 543, 747, 838, 1149, 1353
TaiI ACGT 1 cut(s) 311
TaqI TCGA 1 cut(s) 78
TaqII GACCGA 1 cut(s) 1228
TasI AATT 2 cut(s) 4, 90
TatI WGTACW 1 cut(s) 71
TfiI GAWTC 2 cut(s) 386, 1235
Tru1I TTAA 8 cut(s) 173, 218, 393, 597, 801, 1005, 1074, 1203
Tru9I TTAA 8 cut(s) 173, 218, 393, 597, 801, 1005, 1074, 1203
TspDTI ATGAA 5 cut(s) 17, 57, 285, 342, 399
TspGWI ACGGA 1 cut(s) 379
VpaK11BI GGWCC 2 cut(s) 1406, 1439
XapI RAATTY 1 cut(s) 90
XcmI CCANNNNNNNNNTGG 1 cut(s) 350
XspI CTAG 3 cut(s) 48, 147, 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.