Rorug07G0295600

Double-stranded RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0004669
Physical Location & Seq
Reverse (-)
29061620 .. 29065348
3729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0295600.1

Sequence Viewer

Length: 2298 bp
ATGGACTATAAGCCTCTGACCATTGGGAACGATGTGGTTGAATTTGACCTTGGTGGTTCTGGGGAAGATGACACCATTGCCCTGGACTTAGAACACCCAGATGATGGCTATGATCTTTTCGAAGAAGACGATTTAGTCCAACTTGCCTCTAGTTCCACTAGGTTTGGTGATGATTTGGCTAATGGGGACCCCAATCTTGAACCTTATGAGGGCATGGAATTCGATTCCGAACAGGCCTCTCGCATTTTCTACAATTCTTATGCACGGCGAGTTGGTTTTAGTACCCGGGTAAGTGTGTACCAGCGGTCACGCCGCGATGGCTCCATCATATGCCGGCAGATTGTGTGTTCCCGGGAAGGGTTTCGGCGTGATGGAGGTGAAAATAGGTCTAAAAGGCAGCGGACAATCACTAGAGTTGGCTGCAAGGCACAGATGACTGTGAAGAAACAGAGTTCAGGAAGATGGGCTGTTTCGAAATTAGTGAAGGAACATAACCATGAGCTTGTACCGCCGGATAAGGTGCATTGTCTCCGTTCGCATAGGCATGTCTCTGGTCCTGCTCGGAGTCTGATTGATACCCTTCAAGCGGCCGGGATGGGTCCCAGTGGGGTGATGTCTGTGCTCATCAAGGAATCAGGGGGAATTAATAATGTTGGCTTCACGAAAGTTGATTGCCAGAATTACATGAGCAGTAGCAGGCAGAGAACTCTTGGGAGTGGGGGTCAGCTTGTTTTTGACTATTTGAAGCGAATGCAGGATGAGGATCCTGGTTTCTTTTGTGCCGTCCAGGGTGATTTTGAGAACTCAACAGGTAACATATTCTGGGCTGATTCAAATTCAAGAATGAACTATAGTTACTTTGGAGACACTGTTACATTTGACACAACATATAGAACAAATCGATACCGGGTTCCATTTGCTCCATTTACTGGGTGGAATCATCATGGACTGCCGGTGTTATTTGGATGTGCATTACTCCTTAATGAGTCAGAGTCCTCGTTTGTTTGGCTATTCCAGACTTGGTTAGCTGCTATGTCTGGCTGCCAACCTGTCTCAATCACAACAGACCAGGATAGAATCATCAGGGCTGCTGTTGTGCAAGTATTTCCTGGAACCCGCCACCGCTTTTGTAAATGGAATGTGTTCAGGGAAGCTCAGGAGAAGTTGTCCCACATTTATCAGTCACACCCGACCTTTGAAGCCGAGTTCCTGAGGTGCATTAATGTGACAGAGACGATTGATGAATTTGAGATATGTTGGGAGTCCCTTCTTAAAAGGTATGATCTTGATAGTAATGAATGGCTTCAGTCAATGTACCATGCTCGCCAGCAATGGGTGCCAGTTTTCCTTCGTGATACATTTTTCGGGGAGATGTTTGTAACCCAAGGAAGTGATAATATAAACTCATACTTTGATGGCTATATAAATGCATCCACGAATATTCAGGTGCTGATAAAGCAGTATGAAAAAGCAATTGCCACTCGCCATGAAAAGGAAGTAAAGGCTGATTATGATACATTGAACATCTCTCCAATTCTAAGGACTCCATCTCCTATGGAAAAGCAAGCTGCAAAACTTTATACGAGGATAATATTCATGAAGTTCCAAGAAGAATTGGTCGAAACACTTGCTTATCCGGCAACTGTGGTCGATGATACAGGATCAGAAACCATGTTTCGGGTTGCAAAATTTGGGGAAGACCACAAAGGGCACTTTGTTAAGTTCAATGTTTTTGAGAAGAAAGCTAGTTGTAGCTGCCAAATGTTTGAGTTTTCAGGTATTATTTGCAGGCACATATTAGCAGTTTTCAGAGTAACCAATGTTCTTACACTTCCGTCCCACTATATATTGAAACGTTGGACCAGAAATGCCAAAAGTGGAGTTCTGTTGGATGAGCATGCTCTTGGATTGCCAAATGATTCGCAAGATTCCTCTGCTGCTCGGTATGACAATCTACGAAGGGAAGCTATCAAATATGTAGAAGAAGGGGCAGAATCTGAGTGTGTTTATAATGTGGCAATGGACGCTCTTCGTGAGGCTGCGAACACGGTTGCTGCTGCGAAGAAGCATGGTCCCGGAGTTGTACAACATACTCCAAAGAATTGCAGCCAGCAGCTTCTGTCTTGTACTGTGGATCAGGACAAGAAAGTTGAGGAATTGGCAGCTGAGTTGGAAATTGCTATTCAGCGTTGTGAAGCATATCAAGCAAAACTACTTACTATTTTGAAGGACATGGAAGAGCAGAAGTTAAAGATATCAGTGAATGTTCGGAATGTAAGGCTAAATCTCAAAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006379 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009892 GO:0009954 GO:0009987 GO:0010033 GO:0010051 GO:0010267 GO:0010305 GO:0010445 GO:0010467 GO:0010468 GO:0010589 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0016246 GO:0016441 GO:0016458 GO:0016604 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031053 GO:0031054 GO:0031974 GO:0031981 GO:0032296 GO:0032501 GO:0032502 GO:0033993 GO:0034470 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0035198 GO:0035279 GO:0040029 GO:0042221 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0048856 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0061980 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097305 GO:0098795 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
dsrm

Protein Analysis

765

Amino Acids

87.05

Weight (kDa)

6.04

Isoelectric Point (pI)

49.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 83 - 170 5.4e-31 FAR1 DNA-binding domain
MULE PF10551 291 - 382 4.8e-27 MULE transposase domain
SWIM PF04434 581 - 604 5.8e-10 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2010
AasI GACNNNNNNGTC 1 cut(s) 134
AccB1I GGYRCC 1 cut(s) 1336
AccB7I CCANNNNNTGG 2 cut(s) 104, 929
AccII CGCG 1 cut(s) 315
AciI CCGC 7 cut(s) 304, 313, 400, 509, 587, 1117, 1123
AclI AACGTT 1 cut(s) 1855
AclWI GGATC 4 cut(s) 758, 771, 1669, 2142
AcoI YGGCCR 1 cut(s) 588
AcsI RAATTY 5 cut(s) 41, 218, 835, 1244, 1688
AcuI CTGAAG 1 cut(s) 1289
AfaI GTAC 6 cut(s) 283, 299, 507, 1316, 2085, 2128
AfiI CCNNNNNNNGG 8 cut(s) 104, 209, 357, 586, 929, 1333, 1492, 1677
AjnI CCWGG 5 cut(s) 81, 766, 786, 1068, 1108
AjuI GAANNNNNNNTTGG 2 cut(s) 33, 65
Alw21I GWGCWC 1 cut(s) 624
Alw26I GTCTC 5 cut(s) 533, 553, 858, 1057, 1226
AlwI GGATC 4 cut(s) 758, 771, 1669, 2142
AlwNI CAGNNNCTG 3 cut(s) 1450, 1997, 2119
Ama87I CYCGRG 2 cut(s) 285, 351
AoxI GGCC 2 cut(s) 234, 588
ApoI RAATTY 5 cut(s) 41, 218, 835, 1244, 1688
AseI ATTAAT 2 cut(s) 645, 1221
Asp700I GAANNNNTTC 3 cut(s) 360, 1142, 1302
AspS9I GGNCC 5 cut(s) 187, 554, 599, 1860, 2072
AsuC2I CCSGG 7 cut(s) 286, 287, 352, 353, 592, 908, 2076
AsuHPI GGTGA 4 cut(s) 179, 389, 622, 803
AsuII TTCGAA 2 cut(s) 120, 473
AvaI CYCGRG 2 cut(s) 285, 351
AvaII GGWCC 5 cut(s) 187, 554, 599, 1860, 2072
AxyI CCTNAGG 1 cut(s) 1211
BaeGI GKGCMC 1 cut(s) 1713
BamHI GGATCC 1 cut(s) 763
BanI GGYRCC 1 cut(s) 1336
BbsI GAAGAC 2 cut(s) 132, 1704
Bbv12I GWGCWC 1 cut(s) 624
BccI CCATC 8 cut(s) 98, 311, 332, 365, 456, 589, 1409, 1555
BceAI ACGGC 2 cut(s) 281, 767
BcgI CGANNNNNNTGC 4 cut(s) 202, 236, 1610, 1644
BciT130I CCWGG 5 cut(s) 83, 768, 788, 1070, 1110
BcnI CCSGG 7 cut(s) 286, 287, 352, 353, 592, 908, 2076
BcoDI GTCTC 5 cut(s) 533, 553, 858, 1057, 1226
BfaI CTAG 4 cut(s) 150, 159, 411, 1746
BfmI CTRYAG 1 cut(s) 850
BglI GCCNNNNNGGC 1 cut(s) 318
Bme18I GGWCC 5 cut(s) 187, 554, 599, 1860, 2072
BmeT110I CYCGRG 2 cut(s) 285, 351
BmgT120I GGNCC 5 cut(s) 187, 554, 599, 1860, 2072
BmrI ACTGGG 2 cut(s) 597, 939
BmsI GCATC 1 cut(s) 1439
BmuI ACTGGG 2 cut(s) 597, 939
BpiI GAAGAC 2 cut(s) 132, 1704
Bpu10I CCTNAGC 1 cut(s) 1155
Bpu14I TTCGAA 2 cut(s) 120, 473
BpuMI CCSGG 7 cut(s) 286, 287, 352, 353, 592, 908, 2076
Bsa29I ATCGAT 1 cut(s) 901
BsaBI GATNNNNATC 1 cut(s) 762
BsaJI CCNNGG 6 cut(s) 49, 81, 285, 351, 787, 1384
BsaXI ACNNNNNCTCC 8 cut(s) 706, 736, 855, 885, 1151, 1181, 1534, 1564
Bsc4I CCNNNNNNNGG 8 cut(s) 104, 209, 357, 586, 929, 1333, 1492, 1677
Bse118I RCCGGY 2 cut(s) 333, 952
Bse1I ACTGG 3 cut(s) 603, 934, 1340
Bse21I CCTNAGG 1 cut(s) 1211
Bse3DI GCAATG 3 cut(s) 75, 1337, 2025
Bse8I GATNNNNATC 1 cut(s) 762
BseBI CCWGG 5 cut(s) 83, 768, 788, 1070, 1110
BseCI ATCGAT 1 cut(s) 901
BseDI CCNNGG 6 cut(s) 49, 81, 285, 351, 787, 1384
BseGI GGATG 5 cut(s) 600, 763, 971, 1430, 1897
BseJI GATNNNNATC 1 cut(s) 762
BseLI CCNNNNNNNGG 8 cut(s) 104, 209, 357, 586, 929, 1333, 1492, 1677
BseMI GCAATG 3 cut(s) 75, 1337, 2025
BseMII CTCAG 4 cut(s) 1169, 1202, 1989, 2157
BseNI ACTGG 3 cut(s) 603, 934, 1340
BseSI GKGCMC 1 cut(s) 1713
BseX3I CGGCCG 1 cut(s) 588
Bsh1236I CGCG 1 cut(s) 315
Bsh1285I CGRYCG 1 cut(s) 591
BshFI GGCC 2 cut(s) 236, 590
BshNI GGYRCC 1 cut(s) 1336
BshVI ATCGAT 1 cut(s) 901
BsiEI CGRYCG 1 cut(s) 591
BsiHKAI GWGCWC 1 cut(s) 624
BsiHKCI CYCGRG 2 cut(s) 285, 351
BsiSI CCGG 9 cut(s) 286, 334, 352, 512, 591, 907, 953, 1637, 2076
BslFI GGGAC 6 cut(s) 200, 585, 1153, 1249, 1822, 2058
BslI CCNNNNNNNGG 8 cut(s) 104, 209, 357, 586, 929, 1333, 1492, 1677
BsmAI GTCTC 5 cut(s) 533, 553, 858, 1057, 1226
BsmBI CGTCTC 1 cut(s) 1226
BsmFI GGGAC 6 cut(s) 200, 585, 1153, 1249, 1822, 2058
BsmI GAATGC 1 cut(s) 756
BsnI GGCC 2 cut(s) 236, 590
BsoBI CYCGRG 2 cut(s) 285, 351
Bsp119I TTCGAA 2 cut(s) 120, 473
Bsp1286I GDGCHC 2 cut(s) 624, 1713
Bsp1407I TGTACA 1 cut(s) 2083
Bsp143I GATC 5 cut(s) 112, 763, 1282, 1661, 2134
BspACI CCGC 7 cut(s) 304, 313, 400, 509, 587, 1117, 1123
BspANI GGCC 2 cut(s) 236, 590
BspCNI CTCAG 4 cut(s) 1168, 1203, 1990, 2158
BspDI ATCGAT 1 cut(s) 901
BspFNI CGCG 1 cut(s) 315
BspHI TCATGA 1 cut(s) 1596
BspPI GGATC 4 cut(s) 758, 771, 1669, 2142
BspQI GCTCTTC 2 cut(s) 2034, 2232
BspT104I TTCGAA 2 cut(s) 120, 473
BspT107I GGYRCC 1 cut(s) 1336
BsrDI GCAATG 3 cut(s) 75, 1337, 2025
BsrFI RCCGGY 2 cut(s) 333, 952
BsrGI TGTACA 1 cut(s) 2083
BsrI ACTGG 3 cut(s) 603, 934, 1340
BssAI RCCGGY 2 cut(s) 333, 952
BssECI CCNNGG 6 cut(s) 49, 81, 285, 351, 787, 1384
BssMI GATC 5 cut(s) 112, 763, 1282, 1661, 2134
BssT1I CCWWGG 2 cut(s) 49, 1384
Bst2UI CCWGG 5 cut(s) 83, 768, 788, 1070, 1110
Bst4CI ACNGT 5 cut(s) 439, 871, 1645, 2050, 2131
Bst6I CTCTTC 2 cut(s) 2034, 2232
BstAPI GCANNNNNTGC 1 cut(s) 1336
BstAUI TGTACA 1 cut(s) 2083
BstBI TTCGAA 2 cut(s) 120, 473
BstC8I GCNNGC 8 cut(s) 335, 698, 1324, 1328, 1566, 1790, 1899, 2111
BstDEI CTNAG 6 cut(s) 88, 1155, 1211, 1538, 1998, 2166
BstF5I GGATG 5 cut(s) 600, 763, 971, 1430, 1897
BstFNI CGCG 1 cut(s) 315
BstKTI GATC 5 cut(s) 115, 766, 1285, 1664, 2137
BstMAI GTCTC 5 cut(s) 533, 553, 858, 1057, 1226
BstMBI GATC 5 cut(s) 112, 763, 1282, 1661, 2134
BstMCI CGRYCG 1 cut(s) 591
BstMWI GCNNNNNNNGC 7 cut(s) 318, 508, 1336, 1456, 1637, 2024, 2204
BstNI CCWGG 5 cut(s) 83, 768, 788, 1070, 1110
BstNSI RCATGY 2 cut(s) 548, 1901
BstSFI CTRYAG 1 cut(s) 850
BstSLI GKGCMC 1 cut(s) 1713
BstUI CGCG 1 cut(s) 315
BstV2I GAAGAC 2 cut(s) 132, 1704
BstX2I RGATCY 1 cut(s) 763
BstXI CCANNNNNNTGG 1 cut(s) 82
BstYI RGATCY 1 cut(s) 763
BstZI CGGCCG 1 cut(s) 588
Bsu15I ATCGAT 1 cut(s) 901
Bsu36I CCTNAGG 1 cut(s) 1211
BsuRI GGCC 2 cut(s) 236, 590
BsuTUI ATCGAT 1 cut(s) 901
BtgZI GCGATG 1 cut(s) 330
BtsCI GGATG 5 cut(s) 600, 763, 971, 1430, 1897
BtsIMutI CAGTG 3 cut(s) 610, 867, 2265
Cac8I GCNNGC 8 cut(s) 335, 698, 1324, 1328, 1566, 1790, 1899, 2111
CaiI CAGNNNCTG 3 cut(s) 1450, 1997, 2119
CciI TCATGA 1 cut(s) 1596
Cfr10I RCCGGY 2 cut(s) 333, 952
Cfr13I GGNCC 5 cut(s) 187, 554, 599, 1860, 2072
Cfr9I CCCGGG 2 cut(s) 285, 351
ClaI ATCGAT 1 cut(s) 901
CseI GACGC 1 cut(s) 2033
Csp6I GTAC 6 cut(s) 282, 298, 506, 1315, 2084, 2127
CspCI CAANNNNNGTGG 4 cut(s) 145, 180, 1109, 1144
CviQI GTAC 6 cut(s) 282, 298, 506, 1315, 2084, 2127
DdeI CTNAG 6 cut(s) 88, 1155, 1211, 1538, 1998, 2166
DpnI GATC 5 cut(s) 114, 765, 1284, 1663, 2136
DpnII GATC 5 cut(s) 112, 763, 1282, 1661, 2134
DrdI GACNNNNNNGTC 1 cut(s) 134
DseDI GACNNNNNNGTC 1 cut(s) 134
EaeI YGGCCR 1 cut(s) 588
EagI CGGCCG 1 cut(s) 588
Eam1104I CTCTTC 2 cut(s) 2034, 2232
EarI CTCTTC 2 cut(s) 2034, 2232
EclXI CGGCCG 1 cut(s) 588
Eco130I CCWWGG 2 cut(s) 49, 1384
Eco147I AGGCCT 1 cut(s) 236
Eco32I GATATC 1 cut(s) 2256
Eco47I GGWCC 5 cut(s) 187, 554, 599, 1860, 2072
Eco52I CGGCCG 1 cut(s) 588
Eco57I CTGAAG 1 cut(s) 1289
Eco81I CCTNAGG 1 cut(s) 1211
Eco88I CYCGRG 2 cut(s) 285, 351
EcoO109I RGGNCCY 2 cut(s) 187, 599
EcoRI GAATTC 1 cut(s) 218
EcoRII CCWGG 5 cut(s) 81, 766, 786, 1068, 1108
EcoRV GATATC 1 cut(s) 2256
EcoT14I CCWWGG 2 cut(s) 49, 1384
EcoT22I ATGCAT 1 cut(s) 1432
ErhI CCWWGG 2 cut(s) 49, 1384
Esp3I CGTCTC 1 cut(s) 1226
FaqI GGGAC 6 cut(s) 200, 585, 1153, 1249, 1822, 2058
FauI CCCGC 1 cut(s) 1124
FauNDI CATATG 1 cut(s) 329
FokI GGATG 5 cut(s) 607, 770, 978, 1417, 1904
FspBI CTAG 4 cut(s) 150, 159, 411, 1746
HaeIII GGCC 2 cut(s) 236, 590
HapII CCGG 9 cut(s) 286, 334, 352, 512, 591, 907, 953, 1637, 2076
HgaI GACGC 1 cut(s) 2033
HpaII CCGG 9 cut(s) 286, 334, 352, 512, 591, 907, 953, 1637, 2076
HphI GGTGA 4 cut(s) 179, 389, 622, 803
Hpy166II GTNNAC 1 cut(s) 298
Hpy188I TCNGA 9 cut(s) 18, 229, 564, 570, 991, 1666, 1811, 1999, 2271
Hpy8I GTNNAC 1 cut(s) 298
HpyAV CCTTC 8 cut(s) 350, 478, 590, 1277, 1358, 1953, 1979, 2221
HpyCH4III ACNGT 5 cut(s) 439, 871, 1645, 2050, 2131
HpyCH4IV ACGT 1 cut(s) 1855
HpyF10VI GCNNNNNNNGC 7 cut(s) 318, 508, 1336, 1456, 1637, 2024, 2204
HpyF3I CTNAG 6 cut(s) 88, 1155, 1211, 1538, 1998, 2166
HpySE526I ACGT 1 cut(s) 1855
KflI GGGWCCC 2 cut(s) 187, 599
KroI GCCGGC 1 cut(s) 333
KroNI GCCGGC 1 cut(s) 335
Kzo9I GATC 5 cut(s) 112, 763, 1282, 1661, 2134
LguI GCTCTTC 2 cut(s) 2034, 2232
LmnI GCTCC 2 cut(s) 326, 925
LweI GCATC 1 cut(s) 1439
MaeI CTAG 4 cut(s) 150, 159, 411, 1746
MaeII ACGT 1 cut(s) 1855
MaeIII GTNAC 8 cut(s) 306, 812, 854, 871, 1182, 1225, 1378, 1813
MalI GATC 5 cut(s) 114, 765, 1284, 1663, 2136
MboI GATC 5 cut(s) 112, 763, 1282, 1661, 2134
MfeI CAATTG 1 cut(s) 1473
MflI RGATCY 1 cut(s) 763
MhlI GDGCHC 2 cut(s) 624, 1713
MlyI GAGTC 5 cut(s) 574, 995, 1001, 1271, 1537
MmeI TCCRAC 4 cut(s) 163, 1838, 1869, 2151
Mph1103I ATGCAT 1 cut(s) 1432
MroNI GCCGGC 1 cut(s) 333
MroXI GAANNNNTTC 3 cut(s) 360, 1142, 1302
MseI TTAA 6 cut(s) 645, 981, 1221, 1272, 1719, 2249
MslI CAYNNNNRTG 4 cut(s) 99, 495, 543, 1223
MspA1I CMGCKG 3 cut(s) 304, 400, 2165
MspI CCGG 9 cut(s) 286, 334, 352, 512, 591, 907, 953, 1637, 2076
MunI CAATTG 1 cut(s) 1473
Mva1269I GAATGC 1 cut(s) 756
MvaI CCWGG 5 cut(s) 83, 768, 788, 1070, 1110
MvnI CGCG 1 cut(s) 315
MwoI GCNNNNNNNGC 7 cut(s) 318, 508, 1336, 1456, 1637, 2024, 2204
NaeI GCCGGC 1 cut(s) 335
NciI CCSGG 7 cut(s) 286, 287, 352, 353, 592, 908, 2076
NdeI CATATG 1 cut(s) 329
NdeII GATC 5 cut(s) 112, 763, 1282, 1661, 2134
NgoMIV GCCGGC 1 cut(s) 333
NmeAIII GCCGAG 1 cut(s) 1228
NmuCI GTSAC 3 cut(s) 306, 1182, 1225
NsiI ATGCAT 1 cut(s) 1432
NspI RCATGY 2 cut(s) 548, 1901
NspV TTCGAA 2 cut(s) 120, 473
PaeI GCATGC 1 cut(s) 1901
PagI TCATGA 1 cut(s) 1596
PceI AGGCCT 1 cut(s) 236
PciSI GCTCTTC 2 cut(s) 2034, 2232
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PctI GAATGC 1 cut(s) 756
PdiI GCCGGC 1 cut(s) 335
PdmI GAANNNNTTC 3 cut(s) 360, 1142, 1302
PfeI GAWTC 8 cut(s) 224, 632, 830, 937, 1077, 1919, 1928, 1994
PflMI CCANNNNNTGG 2 cut(s) 104, 929
PfoI TCCNGGA 2 cut(s) 1108, 2074
PleI GAGTC 5 cut(s) 573, 994, 1000, 1270, 1537
PpsI GAGTC 5 cut(s) 573, 994, 1000, 1270, 1537
PpuMI RGGWCCY 2 cut(s) 187, 599
PshBI ATTAAT 2 cut(s) 645, 1221
PsiI TTATAA 1 cut(s) 2010
Psp1406I AACGTT 1 cut(s) 1855
Psp5II RGGWCCY 2 cut(s) 187, 599
Psp6I CCWGG 5 cut(s) 81, 766, 786, 1068, 1108
PspGI CCWGG 5 cut(s) 81, 766, 786, 1068, 1108
PspPI GGNCC 5 cut(s) 187, 554, 599, 1860, 2072
PspPPI RGGWCCY 2 cut(s) 187, 599
PsrI GAACNNNNNNTAC 4 cut(s) 839, 871, 1806, 1838
PstNI CAGNNNCTG 3 cut(s) 1450, 1997, 2119
PsuI RGATCY 1 cut(s) 763
PvuII CAGCTG 1 cut(s) 2165
RsaI GTAC 6 cut(s) 283, 299, 507, 1316, 2085, 2128
RsaNI GTAC 6 cut(s) 282, 298, 506, 1315, 2084, 2127
RseI CAYNNNNRTG 4 cut(s) 99, 495, 543, 1223
SapI GCTCTTC 2 cut(s) 2034, 2232
SaqAI TTAA 6 cut(s) 645, 981, 1221, 1272, 1719, 2249
Sau3AI GATC 5 cut(s) 112, 763, 1282, 1661, 2134
Sau96I GGNCC 5 cut(s) 187, 554, 599, 1860, 2072
SchI GAGTC 5 cut(s) 574, 995, 1001, 1271, 1537
SduI GDGCHC 2 cut(s) 624, 1713
SfaNI GCATC 1 cut(s) 1439
SfcI CTRYAG 1 cut(s) 850
SfuI TTCGAA 2 cut(s) 120, 473
SinI GGWCC 5 cut(s) 187, 554, 599, 1860, 2072
SmaI CCCGGG 2 cut(s) 287, 353
SmiMI CAYNNNNRTG 4 cut(s) 99, 495, 543, 1223
SphI GCATGC 1 cut(s) 1901
SseBI AGGCCT 1 cut(s) 236
SsiI CCGC 7 cut(s) 304, 313, 400, 509, 587, 1117, 1123
SspI AATATT 2 cut(s) 1441, 1593
SspMI CTAG 4 cut(s) 150, 159, 411, 1746
StuI AGGCCT 1 cut(s) 236
StyI CCWWGG 2 cut(s) 49, 1384
TaaI ACNGT 5 cut(s) 439, 871, 1645, 2050, 2131
TaiI ACGT 1 cut(s) 1858
TaqI TCGA 6 cut(s) 120, 222, 473, 901, 1620, 1650
TatI WGTACW 2 cut(s) 2083, 2126
TauI GCSGC 2 cut(s) 315, 590
TfiI GAWTC 8 cut(s) 224, 632, 830, 937, 1077, 1919, 1928, 1994
Tru1I TTAA 6 cut(s) 645, 981, 1221, 1272, 1719, 2249
Tru9I TTAA 6 cut(s) 645, 981, 1221, 1272, 1719, 2249
TscAI CASTG 3 cut(s) 610, 874, 2265
TseFI GTSAC 3 cut(s) 306, 1182, 1225
Tsp45I GTSAC 3 cut(s) 306, 1182, 1225
TspDTI ATGAA 7 cut(s) 860, 1257, 1311, 1479, 1503, 1585, 1613
TspGWI ACGGA 2 cut(s) 521, 1824
TspMI CCCGGG 2 cut(s) 285, 351
TspRI CASTG 3 cut(s) 610, 874, 2265
Van91I CCANNNNNTGG 2 cut(s) 104, 929
VpaK11BI GGWCC 5 cut(s) 187, 554, 599, 1860, 2072
VspI ATTAAT 2 cut(s) 645, 1221
XapI RAATTY 5 cut(s) 41, 218, 835, 1244, 1688
XceI RCATGY 2 cut(s) 548, 1901
XcmI CCANNNNNNNNNTGG 1 cut(s) 930
XmaI CCCGGG 2 cut(s) 285, 351
XmnI GAANNNNTTC 3 cut(s) 360, 1142, 1302
XspI CTAG 4 cut(s) 150, 159, 411, 1746
Zsp2I ATGCAT 1 cut(s) 1432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.