structural constituent of ribosome
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0069471 RchiOBHm_Chr5g0069531 |
| rosa_laevigata | RLG00000001259 RLG00000009439 RLG00000036056 |
| rosa_multiflora | Rmu_co8443991.1_g000001 Rmu_sc0000738.1_g000039 |
| rosa_roxburghii | Rroxscaffold_1G00011460 Rroxscaffold_1G00015510 |
| rosa_rugosa | Rorug05G0582200 |
| rosa_samantha | Rh5AG455400 Rh5BG474200 Rh5BG474500 Rh5CG496600 Rh5CG496900 Rh5DG486000 Rh7BG340900 |
| rosa_wichuraiana | Rw0G023030 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 294 |
| AcoI | YGGCCR | 1 cut(s) | 102 |
| AfaI | GTAC | 1 cut(s) | 53 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 265 |
| AgsI | TTSAA | 1 cut(s) | 70 |
| AhlI | ACTAGT | 1 cut(s) | 214 |
| AluBI | AGCT | 3 cut(s) | 7, 125, 225 |
| AluI | AGCT | 3 cut(s) | 7, 125, 225 |
| AlwI | GGATC | 1 cut(s) | 294 |
| AoxI | GGCC | 2 cut(s) | 43, 102 |
| ApeKI | GCWGC | 3 cut(s) | 4, 125, 231 |
| AspS9I | GGNCC | 1 cut(s) | 43 |
| BalI | TGGCCA | 1 cut(s) | 104 |
| BbvI | GCAGC | 3 cut(s) | 16, 112, 243 |
| BccI | CCATC | 3 cut(s) | 113, 129, 155 |
| BcuI | ACTAGT | 1 cut(s) | 214 |
| BfaI | CTAG | 2 cut(s) | 198, 215 |
| BisI | GCNGC | 3 cut(s) | 5, 126, 232 |
| BlsI | GCNGC | 3 cut(s) | 6, 127, 233 |
| BmcAI | AGTACT | 1 cut(s) | 53 |
| BmgT120I | GGNCC | 1 cut(s) | 43 |
| BmiI | GGNNCC | 1 cut(s) | 289 |
| BmsI | GCATC | 2 cut(s) | 164, 196 |
| BpuEI | CTTGAG | 1 cut(s) | 29 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 265 |
| Bse1I | ACTGG | 1 cut(s) | 289 |
| Bse3DI | GCAATG | 1 cut(s) | 94 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 265 |
| BseMI | GCAATG | 1 cut(s) | 94 |
| BseNI | ACTGG | 1 cut(s) | 289 |
| BseXI | GCAGC | 3 cut(s) | 16, 112, 243 |
| BshFI | GGCC | 2 cut(s) | 45, 104 |
| BsiSI | CCGG | 1 cut(s) | 228 |
| BslFI | GGGAC | 1 cut(s) | 205 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 265 |
| BsmFI | GGGAC | 1 cut(s) | 205 |
| BsnI | GGCC | 2 cut(s) | 45, 104 |
| Bsp143I | GATC | 1 cut(s) | 299 |
| BspANI | GGCC | 2 cut(s) | 45, 104 |
| BspLI | GGNNCC | 1 cut(s) | 289 |
| BspPI | GGATC | 1 cut(s) | 294 |
| BspQI | GCTCTTC | 1 cut(s) | 77 |
| BsrDI | GCAATG | 1 cut(s) | 94 |
| BsrI | ACTGG | 1 cut(s) | 289 |
| BssMI | GATC | 1 cut(s) | 299 |
| Bst4CI | ACNGT | 1 cut(s) | 245 |
| Bst6I | CTCTTC | 1 cut(s) | 77 |
| BstC8I | GCNNGC | 1 cut(s) | 279 |
| BstKTI | GATC | 1 cut(s) | 302 |
| BstMBI | GATC | 1 cut(s) | 299 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 231 |
| BstV1I | GCAGC | 3 cut(s) | 16, 112, 243 |
| BstX2I | RGATCY | 1 cut(s) | 299 |
| BstYI | RGATCY | 1 cut(s) | 299 |
| BsuRI | GGCC | 2 cut(s) | 45, 104 |
| Cac8I | GCNNGC | 1 cut(s) | 279 |
| Cfr13I | GGNCC | 1 cut(s) | 43 |
| Csp6I | GTAC | 1 cut(s) | 52 |
| CviAII | CATG | 1 cut(s) | 313 |
| CviJI | RGCY | 5 cut(s) | 7, 45, 104, 125, 225 |
| CviKI_1 | RGCY | 5 cut(s) | 7, 45, 104, 125, 225 |
| CviQI | GTAC | 1 cut(s) | 52 |
| DpnI | GATC | 1 cut(s) | 301 |
| DpnII | GATC | 1 cut(s) | 299 |
| EaeI | YGGCCR | 1 cut(s) | 102 |
| Eam1104I | CTCTTC | 1 cut(s) | 77 |
| EarI | CTCTTC | 1 cut(s) | 77 |
| FaeI | CATG | 1 cut(s) | 316 |
| FaiI | YATR | 2 cut(s) | 273, 314 |
| FaqI | GGGAC | 1 cut(s) | 205 |
| FatI | CATG | 1 cut(s) | 312 |
| Fnu4HI | GCNGC | 3 cut(s) | 5, 126, 232 |
| Fsp4HI | GCNGC | 3 cut(s) | 5, 126, 232 |
| FspBI | CTAG | 2 cut(s) | 198, 215 |
| GluI | GCNGC | 3 cut(s) | 5, 126, 232 |
| HaeIII | GGCC | 2 cut(s) | 45, 104 |
| HapII | CCGG | 1 cut(s) | 228 |
| Hin1II | CATG | 1 cut(s) | 316 |
| HinfI | GANTC | 1 cut(s) | 153 |
| HpaII | CCGG | 1 cut(s) | 228 |
| Hpy188I | TCNGA | 1 cut(s) | 152 |
| HpyAV | CCTTC | 1 cut(s) | 34 |
| HpyCH4III | ACNGT | 1 cut(s) | 245 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 128, 177 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 231 |
| Hsp92II | CATG | 1 cut(s) | 316 |
| Kzo9I | GATC | 1 cut(s) | 299 |
| LguI | GCTCTTC | 1 cut(s) | 77 |
| LmnI | GCTCC | 1 cut(s) | 230 |
| LpnPI | CCDG | 3 cut(s) | 241, 270, 316 |
| Lsp1109I | GCAGC | 3 cut(s) | 16, 112, 243 |
| LweI | GCATC | 2 cut(s) | 164, 196 |
| MaeI | CTAG | 2 cut(s) | 198, 215 |
| MalI | GATC | 1 cut(s) | 301 |
| MboI | GATC | 1 cut(s) | 299 |
| MboII | GAAGA | 3 cut(s) | 82, 91, 94 |
| MfeI | CAATTG | 1 cut(s) | 237 |
| MflI | RGATCY | 1 cut(s) | 299 |
| MlsI | TGGCCA | 1 cut(s) | 104 |
| MluCI | AATT | 2 cut(s) | 22, 237 |
| MluNI | TGGCCA | 1 cut(s) | 104 |
| MnlI | CCTC | 3 cut(s) | 54, 106, 269 |
| Mox20I | TGGCCA | 1 cut(s) | 104 |
| MscI | TGGCCA | 1 cut(s) | 104 |
| Msp20I | TGGCCA | 1 cut(s) | 104 |
| MspI | CCGG | 1 cut(s) | 228 |
| MunI | CAATTG | 1 cut(s) | 237 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 231 |
| NdeII | GATC | 1 cut(s) | 299 |
| NlaIII | CATG | 1 cut(s) | 316 |
| NlaIV | GGNNCC | 1 cut(s) | 289 |
| PciSI | GCTCTTC | 1 cut(s) | 77 |
| PfeI | GAWTC | 1 cut(s) | 153 |
| PkrI | GCNGC | 3 cut(s) | 6, 127, 233 |
| PspN4I | GGNNCC | 1 cut(s) | 289 |
| PspPI | GGNCC | 1 cut(s) | 43 |
| PsuI | RGATCY | 1 cut(s) | 299 |
| RsaI | GTAC | 1 cut(s) | 53 |
| RsaNI | GTAC | 1 cut(s) | 52 |
| SapI | GCTCTTC | 1 cut(s) | 77 |
| SatI | GCNGC | 3 cut(s) | 5, 126, 232 |
| Sau3AI | GATC | 1 cut(s) | 299 |
| Sau96I | GGNCC | 1 cut(s) | 43 |
| ScaI | AGTACT | 1 cut(s) | 53 |
| SetI | ASST | 4 cut(s) | 9, 127, 227, 324 |
| SfaNI | GCATC | 2 cut(s) | 164, 196 |
| SmlI | CTYRAG | 1 cut(s) | 8 |
| SmoI | CTYRAG | 1 cut(s) | 8 |
| SpeI | ACTAGT | 1 cut(s) | 214 |
| Sse9I | AATT | 2 cut(s) | 22, 237 |
| SspMI | CTAG | 2 cut(s) | 198, 215 |
| TaaI | ACNGT | 1 cut(s) | 245 |
| TasI | AATT | 2 cut(s) | 22, 237 |
| TatI | WGTACW | 1 cut(s) | 51 |
| TfiI | GAWTC | 1 cut(s) | 153 |
| TseI | GCWGC | 3 cut(s) | 4, 125, 231 |
| TspGWI | ACGGA | 1 cut(s) | 50 |
| XspI | CTAG | 2 cut(s) | 198, 215 |
| ZrmI | AGTACT | 1 cut(s) | 53 |