Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0013764

Physical Location & Seq

Genomic Coordinates Reverse (-)

69098658 .. 69100470

Gene Structure 1813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG496600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAGGGGTCTGATTCTGGTATTTTGGCAGCTGGTATCTTTTATTGGGTATCGCACAGTGAGCCCAAAACCAGAACCAGAAGCTGAGGAAGAAGCGCTCTTTCTCTCTGATTGGTGTTGTTGTTGTTTCAAAACCAGGCACTTTTTGAGGAAGTTGAAGAAAGTGAGGAAGAGCAATGGACAAATCTTGGCCATCAATGAGGCACGCGGCACACATGCGCAAGCCTCCATGTTCTCTCTCAATAACGAACTTCCTTATCGTGTTTTGTCTTCACTCTTGAGCTTTGCGTCCATGATTGATAACAAGGAACAAGGCATTCCTACAGATTTTATGATGAGCATCCAGTCACAGTCACACAAAAATGGAAACAGGGGGTCAGAGCTGCAAAAAGATGAAAATGGGGGGTCAGAATCACAGGAAGATGGAAATGGGAGATGCAAAATCTCAAATGGGACTTCTAGTACAGATGCTAAACTAGTGGAAAGCTCCGGCAGCACAACTGATGATTGCTGCTTGATGCTTCTGAGGAGGAAATCAGAGCGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

182

Amino Acids

20.34

Weight (kDa)

8.16

Isoelectric Point (pI)

40.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013764)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0069471 RchiOBHm_Chr5g0069531
rosa_laevigata	RLG00000001259 RLG00000009439 RLG00000036056
rosa_multiflora	Rmu_co8443991.1_g000001 Rmu_sc0000738.1_g000039
rosa_roxburghii	Rroxscaffold_1G00011460 Rroxscaffold_1G00015510
rosa_rugosa	Rorug05G0582200
rosa_samantha	Rh5AG455400 Rh5BG474200 Rh5BG474500 Rh5CG496600 Rh5CG496900 Rh5DG486000 Rh7BG340900
rosa_wichuraiana	Rw0G023030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	219
AccII	CGCG	1 cut(s)	207
AciI	CCGC	1 cut(s)	207
AcoI	YGGCCR	1 cut(s)	189
AfaI	GTAC	1 cut(s)	463
AfeI	AGCGCT	1 cut(s)	96
AgsI	TTSAA	2 cut(s)	130, 157
AhlI	ACTAGT	1 cut(s)	475
AjnI	CCWGG	1 cut(s)	134
AluBI	AGCT	5 cut(s)	31, 83, 282, 382, 486
AluI	AGCT	5 cut(s)	31, 83, 282, 382, 486
AlwNI	CAGNNNCTG	1 cut(s)	83
Aor51HI	AGCGCT	1 cut(s)	96
AoxI	GGCC	1 cut(s)	189
ApeKI	GCWGC	4 cut(s)	28, 382, 492, 510
AspLEI	GCGC	2 cut(s)	97, 220
BalI	TGGCCA	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	65
BbsI	GAAGAC	1 cut(s)	261
BbvCI	CCTCAGC	1 cut(s)	84
BbvI	GCAGC	4 cut(s)	40, 369, 497, 504
BccI	CCATC	2 cut(s)	200, 416
BciT130I	CCWGG	1 cut(s)	136
BcuI	ACTAGT	1 cut(s)	475
BfaI	CTAG	2 cut(s)	459, 476
BfmI	CTRYAG	1 cut(s)	321
BfoI	RGCGCY	1 cut(s)	98
BisI	GCNGC	5 cut(s)	29, 208, 383, 493, 511
BlsI	GCNGC	5 cut(s)	30, 209, 384, 494, 512
Bme1390I	CCNGG	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	136
BmsI	GCATC	4 cut(s)	348, 425, 457, 507
BpiI	GAAGAC	1 cut(s)	261
Bpu10I	CCTNAGC	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	298
BsaBI	GATNNNNATC	1 cut(s)	338
Bse1I	ACTGG	1 cut(s)	343
Bse3DI	GCAATG	1 cut(s)	181
Bse8I	GATNNNNATC	1 cut(s)	338
BseBI	CCWGG	1 cut(s)	136
BseGI	GGATG	1 cut(s)	339
BseJI	GATNNNNATC	1 cut(s)	338
BseMI	GCAATG	1 cut(s)	181
BseMII	CTCAG	2 cut(s)	75, 515
BseNI	ACTGG	1 cut(s)	343
BseRI	GAGGAG	1 cut(s)	541
BseXI	GCAGC	4 cut(s)	40, 369, 497, 504
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	489
BslFI	GGGAC	1 cut(s)	466
BsmFI	GGGAC	1 cut(s)	466
BsmI	GAATGC	1 cut(s)	315
BsnI	GGCC	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	65
BspACI	CCGC	1 cut(s)	207
BspANI	GGCC	1 cut(s)	191
BspCNI	CTCAG	2 cut(s)	76, 516
BspFNI	CGCG	1 cut(s)	207
BspQI	GCTCTTC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	181
BsrI	ACTGG	1 cut(s)	343
Bst2UI	CCWGG	1 cut(s)	136
Bst4CI	ACNGT	2 cut(s)	58, 351
Bst6I	CTCTTC	1 cut(s)	164
BstC8I	GCNNGC	3 cut(s)	205, 222, 543
BstDEI	CTNAG	2 cut(s)	84, 524
BstF5I	GGATG	1 cut(s)	339
BstFNI	CGCG	1 cut(s)	207
BstH2I	RGCGCY	1 cut(s)	98
BstHHI	GCGC	2 cut(s)	97, 220
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 492
BstNI	CCWGG	1 cut(s)	136
BstNSI	RCATGY	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	134
BstSFI	CTRYAG	1 cut(s)	321
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	4 cut(s)	40, 369, 497, 504
BstV2I	GAAGAC	1 cut(s)	261
BsuRI	GGCC	1 cut(s)	191
BtsCI	GGATG	1 cut(s)	339
BtsIMutI	CAGTG	1 cut(s)	63
Cac8I	GCNNGC	3 cut(s)	205, 222, 543
CaiI	CAGNNNCTG	1 cut(s)	83
CfoI	GCGC	2 cut(s)	97, 220
CseI	GACGC	1 cut(s)	276
Csp6I	GTAC	1 cut(s)	462
CviAII	CATG	3 cut(s)	215, 229, 292
CviJI	RGCY	8 cut(s)	31, 63, 83, 191, 224, 282, 382, 486
CviKI_1	RGCY	8 cut(s)	31, 63, 83, 191, 224, 282, 382, 486
CviQI	GTAC	1 cut(s)	462
DdeI	CTNAG	2 cut(s)	84, 524
EaeI	YGGCCR	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
Eco24I	GRGCYC	1 cut(s)	65
Eco47III	AGCGCT	1 cut(s)	96
EcoRII	CCWGG	1 cut(s)	134
EcoT38I	GRGCYC	1 cut(s)	65
FaeI	CATG	3 cut(s)	218, 232, 295
FaiI	YATR	4 cut(s)	216, 230, 293, 332
FaqI	GGGAC	1 cut(s)	466
FatI	CATG	3 cut(s)	214, 228, 291
Fnu4HI	GCNGC	5 cut(s)	29, 208, 383, 493, 511
FokI	GGATG	1 cut(s)	326
FriOI	GRGCYC	1 cut(s)	65
Fsp4HI	GCNGC	5 cut(s)	29, 208, 383, 493, 511
FspBI	CTAG	2 cut(s)	459, 476
FspI	TGCGCA	1 cut(s)	219
GlaI	GCGC	2 cut(s)	96, 219
GluI	GCNGC	5 cut(s)	29, 208, 383, 493, 511
HaeII	RGCGCY	1 cut(s)	98
HaeIII	GGCC	1 cut(s)	191
HapII	CCGG	1 cut(s)	489
HgaI	GACGC	1 cut(s)	276
HhaI	GCGC	2 cut(s)	97, 220
Hin1II	CATG	3 cut(s)	218, 232, 295
Hin6I	GCGC	2 cut(s)	95, 218
HinP1I	GCGC	2 cut(s)	95, 218
HinfI	GANTC	2 cut(s)	13, 410
HpaII	CCGG	1 cut(s)	489
Hpy188I	TCNGA	6 cut(s)	12, 109, 379, 409, 525, 538
Hpy188III	TCNNGA	1 cut(s)	277
HpyCH4III	ACNGT	2 cut(s)	58, 351
HpyCH4V	TGCA	2 cut(s)	385, 438
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 492
HpyF3I	CTNAG	2 cut(s)	84, 524
Hsp92II	CATG	3 cut(s)	218, 232, 295
HspAI	GCGC	2 cut(s)	95, 218
LguI	GCTCTTC	1 cut(s)	164
LmnI	GCTCC	1 cut(s)	491
Lsp1109I	GCAGC	4 cut(s)	40, 369, 497, 504
LweI	GCATC	4 cut(s)	348, 425, 457, 507
MaeI	CTAG	2 cut(s)	459, 476
MaeIII	GTNAC	2 cut(s)	345, 351
MboII	GAAGA	5 cut(s)	101, 169, 181, 261, 431
MhlI	GDGCHC	1 cut(s)	65
MlsI	TGGCCA	1 cut(s)	191
MluNI	TGGCCA	1 cut(s)	191
MnlI	CCTC	7 cut(s)	79, 141, 159, 193, 235, 519, 522
Mox20I	TGGCCA	1 cut(s)	191
MscI	TGGCCA	1 cut(s)	191
MslI	CAYNNNNRTG	1 cut(s)	360
Msp20I	TGGCCA	1 cut(s)	191
MspA1I	CMGCKG	1 cut(s)	31
MspI	CCGG	1 cut(s)	489
MspR9I	CCNGG	1 cut(s)	136
Mva1269I	GAATGC	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	136
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	2 cut(s)	60, 492
NlaIII	CATG	3 cut(s)	218, 232, 295
NmuCI	GTSAC	2 cut(s)	345, 351
NsbI	TGCGCA	1 cut(s)	219
NspI	RCATGY	1 cut(s)	218
PciSI	GCTCTTC	1 cut(s)	164
PctI	GAATGC	1 cut(s)	315
PfeI	GAWTC	2 cut(s)	13, 410
PkrI	GCNGC	5 cut(s)	30, 209, 384, 494, 512
Psp6I	CCWGG	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	134
PstNI	CAGNNNCTG	1 cut(s)	83
PvuII	CAGCTG	1 cut(s)	31
RsaI	GTAC	1 cut(s)	463
RsaNI	GTAC	1 cut(s)	462
RseI	CAYNNNNRTG	1 cut(s)	360
SapI	GCTCTTC	1 cut(s)	164
SatI	GCNGC	5 cut(s)	29, 208, 383, 493, 511
ScrFI	CCNGG	1 cut(s)	136
SduI	GDGCHC	1 cut(s)	65
SetI	ASST	5 cut(s)	33, 85, 284, 384, 488
SfaNI	GCATC	4 cut(s)	348, 425, 457, 507
SfcI	CTRYAG	1 cut(s)	321
SmiMI	CAYNNNNRTG	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
SpeI	ACTAGT	1 cut(s)	475
SsiI	CCGC	1 cut(s)	207
SspMI	CTAG	2 cut(s)	459, 476
StyD4I	CCNGG	1 cut(s)	134
TaaI	ACNGT	2 cut(s)	58, 351
TatI	WGTACW	1 cut(s)	461
TauI	GCSGC	1 cut(s)	210
TfiI	GAWTC	2 cut(s)	13, 410
TscAI	CASTG	1 cut(s)	63
TseFI	GTSAC	2 cut(s)	345, 351
TseI	GCWGC	4 cut(s)	28, 382, 492, 510
Tsp45I	GTSAC	2 cut(s)	345, 351
TspDTI	ATGAA	1 cut(s)	408
TspRI	CASTG	1 cut(s)	63
XceI	RCATGY	1 cut(s)	218
XspI	CTAG	2 cut(s)	459, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.