Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000738.1

Orthogroup ID

OG0013764

Physical Location & Seq

Genomic Coordinates Forward (+)

206643 .. 209046

Gene Structure 2404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000738.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atggaaacgggaggtcagagctgcaaaaagatgaaaatggggggtcagaatcacaggaagatggaaatgggagatgcaaaaactcaaatgcatgggacttctagtaaagatgctaaactagtggaaagctatggcagcacaattgacggtaacactcttttccctctctctggaggagggagttcagaccctggttttgcaaatgtcaaaaggtttttggtggctgtggaggagttaggattccctccatttgagcttttggacctagagcagggatctttggtgccagttatacggtgccttagtgcactcaaaacttcatttgattttggtttttgggaagagaacactaaaaatgaatcaaagacaggaggggagttgttggagatagaatatttaaggaaagtttatcgtaatcaatcattcaagagatacggacaacagggtactcaaaatagagaagggacacaaggaaattcagatgactcaacttctgcagtgacagttccaccagctcttctagaacaattgaagcagggactaatgtggatctctgtggtgtcaagattttggaatcgatcaaatcaaccagtttacatgatttggaaagtgcttgaaaatgcaagactggacgtgtctatggtttcttacgactatattctgggtgactggtttgaggaagaagctatcttcaccgttgtgactgcaggtgctaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005886 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

239

Amino Acids

26.67

Weight (kDa)

5.39

Isoelectric Point (pI)

48.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013764)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0069471 RchiOBHm_Chr5g0069531
rosa_laevigata	RLG00000001259 RLG00000009439 RLG00000036056
rosa_multiflora	Rmu_co8443991.1_g000001 Rmu_sc0000738.1_g000039
rosa_roxburghii	Rroxscaffold_1G00011460 Rroxscaffold_1G00015510
rosa_rugosa	Rorug05G0582200
rosa_samantha	Rh5AG455400 Rh5BG474200 Rh5BG474500 Rh5CG496600 Rh5CG496900 Rh5DG486000 Rh7BG340900
rosa_wichuraiana	Rw0G023030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	698
Acc36I	ACCTGC	1 cut(s)	698
AccB1I	GGYRCC	2 cut(s)	283, 297
AclWI	GGATC	2 cut(s)	283, 557
AcsI	RAATTY	1 cut(s)	475
AfaI	GTAC	1 cut(s)	448
AfiI	CCNNNNNNNGG	2 cut(s)	170, 271
AflIII	ACRYGT	1 cut(s)	633
AgsI	TTSAA	3 cut(s)	427, 532, 617
AhlI	ACTAGT	1 cut(s)	118
AjiI	CACGTC	1 cut(s)	634
AjnI	CCWGG	1 cut(s)	190
AleI	CACNNNNGTG	1 cut(s)	698
AluBI	AGCT	5 cut(s)	21, 129, 256, 515, 686
AluI	AGCT	5 cut(s)	21, 129, 256, 515, 686
Alw21I	GWGCWC	1 cut(s)	310
Alw44I	GTGCAC	1 cut(s)	306
AlwI	GGATC	2 cut(s)	283, 557
AlwNI	CAGNNNCTG	1 cut(s)	191
ApaLI	GTGCAC	1 cut(s)	306
ApeKI	GCWGC	2 cut(s)	21, 135
ApoI	RAATTY	1 cut(s)	475
ArsI	GACNNNNNNTTYG	2 cut(s)	179, 211
AspS9I	GGNCC	1 cut(s)	262
AsuHPI	GGTGA	2 cut(s)	677, 685
AvaII	GGWCC	1 cut(s)	262
BaeGI	GKGCMC	1 cut(s)	310
BanI	GGYRCC	2 cut(s)	283, 297
Bbv12I	GWGCWC	1 cut(s)	310
BbvI	GCAGC	2 cut(s)	8, 147
BccI	CCATC	1 cut(s)	55
BciT130I	CCWGG	1 cut(s)	192
BcuI	ACTAGT	1 cut(s)	118
BfaI	CTAG	4 cut(s)	102, 119, 266, 521
BfmI	CTRYAG	2 cut(s)	495, 705
BfuAI	ACCTGC	1 cut(s)	698
BisI	GCNGC	2 cut(s)	22, 136
BlsI	GCNGC	2 cut(s)	23, 137
Bme1390I	CCNGG	1 cut(s)	192
Bme18I	GGWCC	1 cut(s)	262
BmgBI	CACGTC	1 cut(s)	634
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	2 cut(s)	285, 299
BmrFI	CCNGG	1 cut(s)	192
BmsI	GCATC	2 cut(s)	64, 100
BpmI	CTGGAG	1 cut(s)	192
Bsa29I	ATCGAT	1 cut(s)	577
BsaJI	CCNNGG	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 271
Bse1I	ACTGG	4 cut(s)	287, 590, 633, 674
BseBI	CCWGG	1 cut(s)	192
BseCI	ATCGAT	1 cut(s)	577
BseDI	CCNNGG	1 cut(s)	190
BseLI	CCNNNNNNNGG	2 cut(s)	170, 271
BseNI	ACTGG	4 cut(s)	287, 590, 633, 674
BseRI	GAGGAG	2 cut(s)	189, 245
BseSI	GKGCMC	1 cut(s)	310
BseXI	GCAGC	2 cut(s)	8, 147
BshNI	GGYRCC	2 cut(s)	283, 297
BshVI	ATCGAT	1 cut(s)	577
BsiHKAI	GWGCWC	1 cut(s)	310
BslFI	GGGAC	3 cut(s)	109, 478, 552
BslI	CCNNNNNNNGG	2 cut(s)	170, 271
BsmFI	GGGAC	3 cut(s)	109, 478, 552
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp143I	GATC	3 cut(s)	275, 549, 578
BspDI	ATCGAT	1 cut(s)	577
BspLI	GGNNCC	2 cut(s)	285, 299
BspMAI	CTGCAG	2 cut(s)	499, 709
BspMI	ACCTGC	1 cut(s)	698
BspPI	GGATC	2 cut(s)	283, 557
BspQI	GCTCTTC	1 cut(s)	522
BspT107I	GGYRCC	2 cut(s)	283, 297
BsrI	ACTGG	4 cut(s)	287, 590, 633, 674
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	3 cut(s)	275, 549, 578
Bst2UI	CCWGG	1 cut(s)	192
Bst4CI	ACNGT	4 cut(s)	149, 297, 505, 697
Bst6I	CTCTTC	2 cut(s)	336, 522
BstDEI	CTNAG	1 cut(s)	302
BstENI	CCTNNNNNAGG	1 cut(s)	269
BstKTI	GATC	3 cut(s)	278, 552, 581
BstMBI	GATC	3 cut(s)	275, 549, 578
BstMWI	GCNNNNNNNGC	1 cut(s)	135
BstNI	CCWGG	1 cut(s)	192
BstSCI	CCNGG	1 cut(s)	190
BstSFI	CTRYAG	2 cut(s)	495, 705
BstSLI	GKGCMC	1 cut(s)	310
BstV1I	GCAGC	2 cut(s)	8, 147
BstX2I	RGATCY	2 cut(s)	275, 549
BstYI	RGATCY	2 cut(s)	275, 549
Bsu15I	ATCGAT	1 cut(s)	577
BsuTUI	ATCGAT	1 cut(s)	577
BtrI	CACGTC	1 cut(s)	634
BtsI	GCAGTG	1 cut(s)	504
BtsIMutI	CAGTG	1 cut(s)	504
BveI	ACCTGC	1 cut(s)	698
CaiI	CAGNNNCTG	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	262
ClaI	ATCGAT	1 cut(s)	577
Csp6I	GTAC	1 cut(s)	447
CviAII	CATG	2 cut(s)	92, 598
CviJI	RGCY	6 cut(s)	21, 129, 224, 256, 515, 686
CviKI_1	RGCY	6 cut(s)	21, 129, 224, 256, 515, 686
CviQI	GTAC	1 cut(s)	447
DdeI	CTNAG	1 cut(s)	302
DpnI	GATC	3 cut(s)	277, 551, 580
DpnII	GATC	3 cut(s)	275, 549, 578
Eam1104I	CTCTTC	2 cut(s)	336, 522
EarI	CTCTTC	2 cut(s)	336, 522
Eco47I	GGWCC	1 cut(s)	262
EcoNI	CCTNNNNNAGG	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	190
EcoT22I	ATGCAT	1 cut(s)	93
FaeI	CATG	2 cut(s)	95, 601
FaiI	YATR	6 cut(s)	93, 132, 293, 599, 641, 657
FaqI	GGGAC	3 cut(s)	109, 478, 552
FatI	CATG	2 cut(s)	91, 597
Fnu4HI	GCNGC	2 cut(s)	22, 136
Fsp4HI	GCNGC	2 cut(s)	22, 136
FspBI	CTAG	4 cut(s)	102, 119, 266, 521
GluI	GCNGC	2 cut(s)	22, 136
GsuI	CTGGAG	1 cut(s)	192
Hin1II	CATG	2 cut(s)	95, 601
HinfI	GANTC	5 cut(s)	49, 240, 359, 485, 574
HphI	GGTGA	2 cut(s)	677, 685
Hpy166II	GTNNAC	2 cut(s)	308, 595
Hpy188I	TCNGA	4 cut(s)	18, 48, 187, 481
Hpy188III	TCNNGA	4 cut(s)	171, 427, 521, 564
Hpy8I	GTNNAC	2 cut(s)	308, 595
HpyAV	CCTTC	1 cut(s)	455
HpyCH4III	ACNGT	4 cut(s)	149, 297, 505, 697
HpyCH4IV	ACGT	1 cut(s)	633
HpyCH4V	TGCA	8 cut(s)	24, 77, 91, 200, 308, 497, 623, 707
HpyF10VI	GCNNNNNNNGC	1 cut(s)	135
HpyF3I	CTNAG	1 cut(s)	302
HpySE526I	ACGT	1 cut(s)	633
Hsp92II	CATG	2 cut(s)	95, 601
Kzo9I	GATC	3 cut(s)	275, 549, 578
LguI	GCTCTTC	1 cut(s)	522
Lsp1109I	GCAGC	2 cut(s)	8, 147
LweI	GCATC	2 cut(s)	64, 100
MaeI	CTAG	4 cut(s)	102, 119, 266, 521
MaeII	ACGT	1 cut(s)	633
MaeIII	GTNAC	4 cut(s)	149, 499, 665, 700
MalI	GATC	3 cut(s)	277, 551, 580
MboI	GATC	3 cut(s)	275, 549, 578
MboII	GAAGA	5 cut(s)	70, 353, 509, 682, 692
MfeI	CAATTG	2 cut(s)	141, 527
MflI	RGATCY	2 cut(s)	275, 549
MhlI	GDGCHC	1 cut(s)	310
MluCI	AATT	3 cut(s)	141, 475, 527
MlyI	GAGTC	1 cut(s)	479
MmeI	TCCRAC	1 cut(s)	363
MnlI	CCTC	8 cut(s)	5, 167, 170, 174, 223, 255, 365, 670
Mph1103I	ATGCAT	1 cut(s)	93
MseI	TTAA	1 cut(s)	398
MslI	CAYNNNNRTG	1 cut(s)	698
MspR9I	CCNGG	1 cut(s)	192
MunI	CAATTG	2 cut(s)	141, 527
MvaI	CCWGG	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	135
NdeII	GATC	3 cut(s)	275, 549, 578
NlaIII	CATG	2 cut(s)	95, 601
NlaIV	GGNNCC	2 cut(s)	285, 299
NmuCI	GTSAC	3 cut(s)	499, 665, 700
NsiI	ATGCAT	1 cut(s)	93
OliI	CACNNNNGTG	1 cut(s)	698
PaqCI	CACCTGC	1 cut(s)	698
PciSI	GCTCTTC	1 cut(s)	522
PfeI	GAWTC	4 cut(s)	49, 240, 359, 574
PkrI	GCNGC	2 cut(s)	23, 137
PleI	GAGTC	1 cut(s)	479
PpsI	GAGTC	1 cut(s)	479
Psp6I	CCWGG	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	190
PspN4I	GGNNCC	2 cut(s)	285, 299
PspPI	GGNCC	1 cut(s)	262
PstI	CTGCAG	2 cut(s)	499, 709
PstNI	CAGNNNCTG	1 cut(s)	191
PsuI	RGATCY	2 cut(s)	275, 549
RsaI	GTAC	1 cut(s)	448
RsaNI	GTAC	1 cut(s)	447
RseI	CAYNNNNRTG	1 cut(s)	698
SapI	GCTCTTC	1 cut(s)	522
SaqAI	TTAA	1 cut(s)	398
SatI	GCNGC	2 cut(s)	22, 136
Sau3AI	GATC	3 cut(s)	275, 549, 578
Sau96I	GGNCC	1 cut(s)	262
SchI	GAGTC	1 cut(s)	479
ScrFI	CCNGG	1 cut(s)	192
SduI	GDGCHC	1 cut(s)	310
SfaNI	GCATC	2 cut(s)	64, 100
SfcI	CTRYAG	2 cut(s)	495, 705
SinI	GGWCC	1 cut(s)	262
SmiMI	CAYNNNNRTG	1 cut(s)	698
SpeI	ACTAGT	1 cut(s)	118
Sse9I	AATT	3 cut(s)	141, 475, 527
SspI	AATATT	1 cut(s)	395
SspMI	CTAG	4 cut(s)	102, 119, 266, 521
StyD4I	CCNGG	1 cut(s)	190
TaaI	ACNGT	4 cut(s)	149, 297, 505, 697
TaiI	ACGT	1 cut(s)	636
TaqI	TCGA	1 cut(s)	577
TasI	AATT	3 cut(s)	141, 475, 527
TfiI	GAWTC	4 cut(s)	49, 240, 359, 574
Tru1I	TTAA	1 cut(s)	398
Tru9I	TTAA	1 cut(s)	398
TscAI	CASTG	1 cut(s)	504
TseFI	GTSAC	3 cut(s)	499, 665, 700
TseI	GCWGC	2 cut(s)	21, 135
Tsp45I	GTSAC	3 cut(s)	499, 665, 700
TspDTI	ATGAA	3 cut(s)	47, 309, 372
TspGWI	ACGGA	1 cut(s)	450
TspRI	CASTG	1 cut(s)	504
VneI	GTGCAC	1 cut(s)	306
VpaK11BI	GGWCC	1 cut(s)	262
XagI	CCTNNNNNAGG	1 cut(s)	269
XapI	RAATTY	1 cut(s)	475
XbaI	TCTAGA	1 cut(s)	520
XspI	CTAG	4 cut(s)	102, 119, 266, 521
Zsp2I	ATGCAT	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.