Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0013764

Physical Location & Seq

Genomic Coordinates Reverse (-)

75395857 .. 75399779

Gene Structure 3923 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036056

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGGGAAGCAACCAAGCTCGAACAAACCAATTTCTCGATTCCTCCGGTCACCCCGAAGCGCTCTCTCTCTCTCTGATTGGTGTTGTTGTTTCAAAACCAAGTACTTTTTGAGGAAGTTGAAGAAAGTGAAGAAGAGTAATGGACAAATCTTGGCCATCAATGAGGCGTGCGGCACACATGCACAAGCCTACATCTCTGCCTCCGCAATTGATAACAAGGAACAAGGCATTCCTACAGGTTTTTATGATGAGCATCCAGTCAGAGTCACACAAAAATGGAGACAGGGGGTCAGAGCTGCAAAAAGATGGAAATGGGGGGTCAGAATCACAGATGGAAATGGGAGATGCAAAATCTCAAATGGGACTTCTAGTAAAGGTCCTAAACTAGTGGAAAGCTCCGGCAGCACAATTGACGGGATCTTTGGTGCAATTGATGGTTTGAGATCATTTGCAGGGATCTTTGGTGCCAGTTATACGGCAATTTTTCTCAGCTTTGCTAGAAAGCCTGATCAAGAAGAACATATGATCTTAAAATACCTGTTTCGGATTTGGAAAGTGCTTGAGAATGCAAGACTGCACCTGTCTATGGTCTCTTACGACTATATTCTGGGTGACTGGTTTGAGGAAGAAGCCATCTTCACCGTTGTGACTGCAGGTGCAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

222

Amino Acids

24.77

Weight (kDa)

9.75

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013764)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0069471 RchiOBHm_Chr5g0069531
rosa_laevigata	RLG00000001259 RLG00000009439 RLG00000036056
rosa_multiflora	Rmu_co8443991.1_g000001 Rmu_sc0000738.1_g000039
rosa_roxburghii	Rroxscaffold_1G00011460 Rroxscaffold_1G00015510
rosa_rugosa	Rorug05G0582200
rosa_samantha	Rh5AG455400 Rh5BG474200 Rh5BG474500 Rh5CG496600 Rh5CG496900 Rh5DG486000 Rh7BG340900
rosa_wichuraiana	Rw0G023030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	644
Acc36I	ACCTGC	1 cut(s)	644
AccB1I	GGYRCC	1 cut(s)	464
AciI	CCGC	2 cut(s)	171, 204
AclWI	GGATC	2 cut(s)	425, 464
AcoI	YGGCCR	1 cut(s)	153
AfaI	GTAC	1 cut(s)	104
AfeI	AGCGCT	1 cut(s)	61
AfiI	CCNNNNNNNGG	1 cut(s)	586
AgsI	TTSAA	2 cut(s)	94, 121
AhdI	GACNNNNNGTC	1 cut(s)	287
AhlI	ACTAGT	1 cut(s)	385
AleI	CACNNNNGTG	1 cut(s)	644
AluBI	AGCT	4 cut(s)	18, 296, 396, 492
AluI	AGCT	4 cut(s)	18, 296, 396, 492
Alw26I	GTCTC	2 cut(s)	274, 595
AlwI	GGATC	2 cut(s)	425, 464
Aor51HI	AGCGCT	1 cut(s)	61
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	2 cut(s)	296, 402
ArsI	GACNNNNNNTTYG	2 cut(s)	404, 436
AspLEI	GCGC	1 cut(s)	62
AspS9I	GGNCC	1 cut(s)	377
AsuHPI	GGTGA	3 cut(s)	42, 623, 631
AvaII	GGWCC	1 cut(s)	377
BalI	TGGCCA	1 cut(s)	155
BanI	GGYRCC	1 cut(s)	464
BbvI	GCAGC	2 cut(s)	283, 414
BccI	CCATC	5 cut(s)	164, 300, 326, 428, 641
BceAI	ACGGC	1 cut(s)	492
BclI	TGATCA	1 cut(s)	508
BcoDI	GTCTC	2 cut(s)	274, 595
BcuI	ACTAGT	1 cut(s)	385
BfaI	CTAG	3 cut(s)	369, 386, 498
BfmI	CTRYAG	2 cut(s)	234, 651
BfoI	RGCGCY	1 cut(s)	63
BfuAI	ACCTGC	1 cut(s)	644
BisI	GCNGC	3 cut(s)	172, 297, 403
BlsI	GCNGC	3 cut(s)	173, 298, 404
BmcAI	AGTACT	1 cut(s)	104
Bme18I	GGWCC	1 cut(s)	377
BmeRI	GACNNNNNGTC	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	377
BmiI	GGNNCC	1 cut(s)	466
BmsI	GCATC	2 cut(s)	262, 335
BpuEI	CTTGAG	1 cut(s)	581
BsaBI	GATNNNNATC	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	595
BsaWI	WCCGGW	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	1 cut(s)	586
Bse1I	ACTGG	3 cut(s)	257, 468, 620
Bse8I	GATNNNNATC	1 cut(s)	252
BseGI	GGATG	1 cut(s)	253
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	1 cut(s)	586
BseMII	CTCAG	1 cut(s)	502
BseNI	ACTGG	3 cut(s)	257, 468, 620
BseXI	GCAGC	2 cut(s)	283, 414
BsgI	GTGCAG	1 cut(s)	560
BshFI	GGCC	1 cut(s)	155
BshNI	GGYRCC	1 cut(s)	464
BsiSI	CCGG	2 cut(s)	46, 399
BslFI	GGGAC	1 cut(s)	376
BslI	CCNNNNNNNGG	1 cut(s)	586
BsmAI	GTCTC	2 cut(s)	274, 595
BsmFI	GGGAC	1 cut(s)	376
BsmI	GAATGC	2 cut(s)	228, 571
BsnI	GGCC	1 cut(s)	155
Bso31I	GGTCTC	1 cut(s)	595
Bsp143I	GATC	5 cut(s)	417, 443, 456, 508, 525
BspACI	CCGC	2 cut(s)	171, 204
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	1 cut(s)	501
BspLI	GGNNCC	1 cut(s)	466
BspMAI	CTGCAG	1 cut(s)	655
BspMI	ACCTGC	1 cut(s)	644
BspPI	GGATC	2 cut(s)	425, 464
BspT107I	GGYRCC	1 cut(s)	464
BspTNI	GGTCTC	1 cut(s)	595
BsrI	ACTGG	3 cut(s)	257, 468, 620
BssMI	GATC	5 cut(s)	417, 443, 456, 508, 525
Bst4CI	ACNGT	1 cut(s)	643
Bst6I	CTCTTC	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	1 cut(s)	488
BstEII	GGTNACC	1 cut(s)	48
BstF5I	GGATG	1 cut(s)	253
BstH2I	RGCGCY	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	5 cut(s)	420, 446, 459, 511, 528
BstMAI	GTCTC	2 cut(s)	274, 595
BstMBI	GATC	5 cut(s)	417, 443, 456, 508, 525
BstMWI	GCNNNNNNNGC	1 cut(s)	402
BstNSI	RCATGY	1 cut(s)	182
BstPI	GGTNACC	1 cut(s)	48
BstSFI	CTRYAG	2 cut(s)	234, 651
BstV1I	GCAGC	2 cut(s)	283, 414
BstX2I	RGATCY	2 cut(s)	417, 456
BstYI	RGATCY	2 cut(s)	417, 456
BsuRI	GGCC	1 cut(s)	155
BtsCI	GGATG	1 cut(s)	253
BveI	ACCTGC	1 cut(s)	644
Cac8I	GCNNGC	1 cut(s)	169
CfoI	GCGC	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	377
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	1 cut(s)	179
CviJI	RGCY	8 cut(s)	18, 155, 188, 296, 396, 492, 505, 632
CviKI_1	RGCY	8 cut(s)	18, 155, 188, 296, 396, 492, 505, 632
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	1 cut(s)	488
DpnI	GATC	5 cut(s)	419, 445, 458, 510, 527
DpnII	GATC	5 cut(s)	417, 443, 456, 508, 525
DriI	GACNNNNNGTC	1 cut(s)	287
EaeI	YGGCCR	1 cut(s)	153
Eam1104I	CTCTTC	1 cut(s)	128
Eam1105I	GACNNNNNGTC	1 cut(s)	287
EarI	CTCTTC	1 cut(s)	128
Eco31I	GGTCTC	1 cut(s)	595
Eco47I	GGWCC	1 cut(s)	377
Eco47III	AGCGCT	1 cut(s)	61
Eco91I	GGTNACC	1 cut(s)	48
EcoO109I	RGGNCCY	1 cut(s)	377
EcoO65I	GGTNACC	1 cut(s)	48
FaeI	CATG	1 cut(s)	182
FaiI	YATR	7 cut(s)	180, 246, 474, 522, 524, 587, 603
FaqI	GGGAC	1 cut(s)	376
FatI	CATG	1 cut(s)	178
FauNDI	CATATG	1 cut(s)	522
FbaI	TGATCA	1 cut(s)	508
Fnu4HI	GCNGC	3 cut(s)	172, 297, 403
FokI	GGATG	1 cut(s)	240
Fsp4HI	GCNGC	3 cut(s)	172, 297, 403
FspBI	CTAG	3 cut(s)	369, 386, 498
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	3 cut(s)	172, 297, 403
HaeII	RGCGCY	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	2 cut(s)	46, 399
HhaI	GCGC	1 cut(s)	62
Hin1II	CATG	1 cut(s)	182
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HinfI	GANTC	3 cut(s)	39, 264, 324
HpaII	CCGG	2 cut(s)	46, 399
HphI	GGTGA	3 cut(s)	42, 623, 631
Hpy188I	TCNGA	5 cut(s)	76, 263, 293, 323, 546
Hpy188III	TCNNGA	2 cut(s)	36, 512
HpyCH4III	ACNGT	1 cut(s)	643
HpyCH4V	TGCA	9 cut(s)	182, 299, 348, 428, 452, 569, 577, 653, 659
HpyF10VI	GCNNNNNNNGC	1 cut(s)	402
HpyF3I	CTNAG	1 cut(s)	488
Hsp92II	CATG	1 cut(s)	182
HspAI	GCGC	1 cut(s)	60
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	5 cut(s)	417, 443, 456, 508, 525
LmnI	GCTCC	1 cut(s)	401
Lsp1109I	GCAGC	2 cut(s)	283, 414
LweI	GCATC	2 cut(s)	262, 335
MaeI	CTAG	3 cut(s)	369, 386, 498
MaeIII	GTNAC	4 cut(s)	48, 265, 611, 646
MalI	GATC	5 cut(s)	419, 445, 458, 510, 527
MboI	GATC	5 cut(s)	417, 443, 456, 508, 525
MboII	GAAGA	6 cut(s)	133, 142, 145, 527, 628, 638
MfeI	CAATTG	3 cut(s)	207, 408, 429
MflI	RGATCY	2 cut(s)	417, 456
MlsI	TGGCCA	1 cut(s)	155
MluCI	AATT	5 cut(s)	30, 207, 408, 429, 480
MluNI	TGGCCA	1 cut(s)	155
MlyI	GAGTC	1 cut(s)	273
MnlI	CCTC	5 cut(s)	53, 105, 157, 211, 616
Mox20I	TGGCCA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	155
MseI	TTAA	1 cut(s)	530
MslI	CAYNNNNRTG	2 cut(s)	274, 644
Msp20I	TGGCCA	1 cut(s)	155
MspI	CCGG	2 cut(s)	46, 399
MunI	CAATTG	3 cut(s)	207, 408, 429
Mva1269I	GAATGC	2 cut(s)	228, 571
MwoI	GCNNNNNNNGC	1 cut(s)	402
NdeI	CATATG	1 cut(s)	522
NdeII	GATC	5 cut(s)	417, 443, 456, 508, 525
NlaIII	CATG	1 cut(s)	182
NlaIV	GGNNCC	1 cut(s)	466
NmuCI	GTSAC	4 cut(s)	48, 265, 611, 646
NspI	RCATGY	1 cut(s)	182
OliI	CACNNNNGTG	1 cut(s)	644
PaqCI	CACCTGC	1 cut(s)	644
PctI	GAATGC	2 cut(s)	228, 571
PfeI	GAWTC	2 cut(s)	39, 324
PkrI	GCNGC	3 cut(s)	173, 298, 404
PleI	GAGTC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	272
PpuMI	RGGWCCY	1 cut(s)	377
Psp5II	RGGWCCY	1 cut(s)	377
PspEI	GGTNACC	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	466
PspPI	GGNCC	1 cut(s)	377
PspPPI	RGGWCCY	1 cut(s)	377
PstI	CTGCAG	1 cut(s)	655
PsuI	RGATCY	2 cut(s)	417, 456
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
RseI	CAYNNNNRTG	2 cut(s)	274, 644
SaqAI	TTAA	1 cut(s)	530
SatI	GCNGC	3 cut(s)	172, 297, 403
Sau3AI	GATC	5 cut(s)	417, 443, 456, 508, 525
Sau96I	GGNCC	1 cut(s)	377
ScaI	AGTACT	1 cut(s)	104
SchI	GAGTC	1 cut(s)	273
SetI	ASST	9 cut(s)	20, 241, 298, 379, 398, 494, 540, 582, 658
SfaNI	GCATC	2 cut(s)	262, 335
SfcI	CTRYAG	2 cut(s)	234, 651
SinI	GGWCC	1 cut(s)	377
SmiMI	CAYNNNNRTG	2 cut(s)	274, 644
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
SpeI	ACTAGT	1 cut(s)	385
Sse9I	AATT	5 cut(s)	30, 207, 408, 429, 480
SsiI	CCGC	2 cut(s)	171, 204
SspMI	CTAG	3 cut(s)	369, 386, 498
TaaI	ACNGT	1 cut(s)	643
TaqI	TCGA	2 cut(s)	20, 37
TasI	AATT	5 cut(s)	30, 207, 408, 429, 480
TatI	WGTACW	1 cut(s)	102
TauI	GCSGC	1 cut(s)	174
TfiI	GAWTC	2 cut(s)	39, 324
Tru1I	TTAA	1 cut(s)	530
Tru9I	TTAA	1 cut(s)	530
TseFI	GTSAC	4 cut(s)	48, 265, 611, 646
TseI	GCWGC	2 cut(s)	296, 402
Tsp45I	GTSAC	4 cut(s)	48, 265, 611, 646
VpaK11BI	GGWCC	1 cut(s)	377
XceI	RCATGY	1 cut(s)	182
XspI	CTAG	3 cut(s)	369, 386, 498
ZrmI	AGTACT	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.