Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig01074

Orthogroup ID

OG0013764

Physical Location & Seq

Genomic Coordinates Reverse (-)

7435 .. 8784

Gene Structure 1350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G023030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGACAAACCTTGGCCATCAATGAGCTCTGCATCCGCAATTGATAACAAGGAACAAGGCATTCCTACAGATTTTATGATGAGCATCCGGTCAGAGTTACACAAAAATGGAAACAGGGGGGAGGGAGTTCAGACCCTGGTTTTTGCAAATGTCATAAGGTTTCTGGTGGCTGTGGAGGAGTTAAGATTCCCTCCGTTTGAGTTAAGATTTGCTAGAAAACCTGATCAAGAAGAGCATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

80

Amino Acids

9.21

Weight (kDa)

5.61

Isoelectric Point (pI)

51.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013764)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0069471 RchiOBHm_Chr5g0069531
rosa_laevigata	RLG00000001259 RLG00000009439 RLG00000036056
rosa_multiflora	Rmu_co8443991.1_g000001 Rmu_sc0000738.1_g000039
rosa_roxburghii	Rroxscaffold_1G00011460 Rroxscaffold_1G00015510
rosa_rugosa	Rorug05G0582200
rosa_samantha	Rh5AG455400 Rh5BG474200 Rh5BG474500 Rh5CG496600 Rh5CG496900 Rh5DG486000 Rh7BG340900
rosa_wichuraiana	Rw0G023030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	36
AcoI	YGGCCR	1 cut(s)	14
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	1 cut(s)	27
AluI	AGCT	1 cut(s)	27
Alw21I	GWGCWC	1 cut(s)	29
AlwNI	CAGNNNCTG	1 cut(s)	136
AoxI	GGCC	1 cut(s)	14
BalI	TGGCCA	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	29
BccI	CCATC	1 cut(s)	25
BciT130I	CCWGG	1 cut(s)	137
BclI	TGATCA	1 cut(s)	223
BfaI	CTAG	1 cut(s)	213
BfmI	CTRYAG	1 cut(s)	66
Bme1390I	CCNGG	1 cut(s)	137
BmrFI	CCNGG	1 cut(s)	137
BmsI	GCATC	2 cut(s)	41, 93
BsaBI	GATNNNNATC	1 cut(s)	83
BsaJI	CCNNGG	2 cut(s)	11, 135
BsaWI	WCCGGW	1 cut(s)	87
Bse8I	GATNNNNATC	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	137
BseDI	CCNNGG	2 cut(s)	11, 135
BseGI	GGATG	2 cut(s)	32, 84
BseJI	GATNNNNATC	1 cut(s)	83
BseRI	GAGGAG	1 cut(s)	191
BshFI	GGCC	1 cut(s)	16
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	88
BsmI	GAATGC	1 cut(s)	60
BsnI	GGCC	1 cut(s)	16
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	223
BspACI	CCGC	1 cut(s)	36
BspANI	GGCC	1 cut(s)	16
BspQI	GCTCTTC	1 cut(s)	225
BssECI	CCNNGG	2 cut(s)	11, 135
BssMI	GATC	1 cut(s)	223
BssT1I	CCWWGG	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	137
Bst6I	CTCTTC	1 cut(s)	225
BstF5I	GGATG	2 cut(s)	32, 84
BstKTI	GATC	1 cut(s)	226
BstMBI	GATC	1 cut(s)	223
BstNI	CCWGG	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	135
BstSFI	CTRYAG	1 cut(s)	66
BsuRI	GGCC	1 cut(s)	16
BtsCI	GGATG	2 cut(s)	32, 84
CaiI	CAGNNNCTG	1 cut(s)	136
CviJI	RGCY	3 cut(s)	16, 27, 170
CviKI_1	RGCY	3 cut(s)	16, 27, 170
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
EaeI	YGGCCR	1 cut(s)	14
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Ecl136II	GAGCTC	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	11
Eco24I	GRGCYC	1 cut(s)	29
Eco53kI	GAGCTC	1 cut(s)	27
EcoICRI	GAGCTC	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	135
EcoT14I	CCWWGG	1 cut(s)	11
EcoT38I	GRGCYC	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	11
FaiI	YATR	4 cut(s)	77, 155, 237, 239
FauNDI	CATATG	1 cut(s)	237
FbaI	TGATCA	1 cut(s)	223
FokI	GGATG	2 cut(s)	19, 71
FriOI	GRGCYC	1 cut(s)	29
FspBI	CTAG	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	16
HapII	CCGG	1 cut(s)	88
HinfI	GANTC	1 cut(s)	186
HpaII	CCGG	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	94, 132
Hpy188III	TCNNGA	1 cut(s)	227
HpyCH4V	TGCA	2 cut(s)	32, 146
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	1 cut(s)	223
LguI	GCTCTTC	1 cut(s)	225
LpnPI	CCDG	6 cut(s)	100, 101, 122, 149, 149, 234
LweI	GCATC	2 cut(s)	41, 93
MaeI	CTAG	1 cut(s)	213
MaeIII	GTNAC	1 cut(s)	96
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MboII	GAAGA	1 cut(s)	242
MfeI	CAATTG	1 cut(s)	39
MhlI	GDGCHC	1 cut(s)	29
MlsI	TGGCCA	1 cut(s)	16
MluCI	AATT	1 cut(s)	39
MluNI	TGGCCA	1 cut(s)	16
MnlI	CCTC	3 cut(s)	115, 169, 201
Mox20I	TGGCCA	1 cut(s)	16
MscI	TGGCCA	1 cut(s)	16
MseI	TTAA	2 cut(s)	182, 203
MslI	CAYNNNNRTG	1 cut(s)	105
Msp20I	TGGCCA	1 cut(s)	16
MspI	CCGG	1 cut(s)	88
MspR9I	CCNGG	1 cut(s)	137
MunI	CAATTG	1 cut(s)	39
Mva1269I	GAATGC	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	137
NdeI	CATATG	1 cut(s)	237
NdeII	GATC	1 cut(s)	223
PciSI	GCTCTTC	1 cut(s)	225
PctI	GAATGC	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	186
Psp124BI	GAGCTC	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PstNI	CAGNNNCTG	1 cut(s)	136
RseI	CAYNNNNRTG	1 cut(s)	105
SacI	GAGCTC	1 cut(s)	29
SapI	GCTCTTC	1 cut(s)	225
SaqAI	TTAA	2 cut(s)	182, 203
Sau3AI	GATC	1 cut(s)	223
ScrFI	CCNGG	1 cut(s)	137
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	4 cut(s)	13, 29, 161, 223
SfaNI	GCATC	2 cut(s)	41, 93
SfcI	CTRYAG	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	105
Sse9I	AATT	1 cut(s)	39
SsiI	CCGC	1 cut(s)	36
SspMI	CTAG	1 cut(s)	213
SstI	GAGCTC	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	135
StyI	CCWWGG	1 cut(s)	11
TasI	AATT	1 cut(s)	39
TfiI	GAWTC	1 cut(s)	186
Tru1I	TTAA	2 cut(s)	182, 203
Tru9I	TTAA	2 cut(s)	182, 203
TspGWI	ACGGA	1 cut(s)	183
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.