Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0013764

Physical Location & Seq

Genomic Coordinates Reverse (-)

76396241 .. 76397606

Gene Structure 1366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG486000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGACAAATCTTGGCCATCAATGAGCTCTGCCTCCGCAATTGATAACAAGGAACAAAGCATTCCTACAGAGTCACACAAAAATGGAGACAGGGGGTCAGAGCTGCAAAAAGATGGAAATGGGGGGGTCAGAATCACAGATGGAAATGGGAGATGCAATATCTCAAATGGGACTTCTAGTAAAGATCCTAAACTAGTGGAAAGCTCCAGCAGCACAATTGACGGTAACACTCTTTCCCCTCTCTTTGGAGGAGGGAGTTCAGACCCTGATTTTGCAAATGTCAAAAGGTTTCTGGTGGCTGTGGAGGAGTTAGGATTCCCTCCGTTTGAGTTAAGATTTGCTAGAAAACTTGATCAAGAAGAGCACATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005886 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

123

Amino Acids

13.25

Weight (kDa)

4.97

Isoelectric Point (pI)

54.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013764)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0069471 RchiOBHm_Chr5g0069531
rosa_laevigata	RLG00000001259 RLG00000009439 RLG00000036056
rosa_multiflora	Rmu_co8443991.1_g000001 Rmu_sc0000738.1_g000039
rosa_roxburghii	Rroxscaffold_1G00011460 Rroxscaffold_1G00015510
rosa_rugosa	Rorug05G0582200
rosa_samantha	Rh5AG455400 Rh5BG474200 Rh5BG474500 Rh5CG496600 Rh5CG496900 Rh5DG486000 Rh7BG340900
rosa_wichuraiana	Rw0G023030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	36
AclWI	GGATC	1 cut(s)	179
AcoI	YGGCCR	1 cut(s)	14
AfiI	CCNNNNNNNGG	1 cut(s)	245
AflIII	ACRYGT	1 cut(s)	366
AhdI	GACNNNNNGTC	1 cut(s)	94
AhlI	ACTAGT	1 cut(s)	193
AluBI	AGCT	3 cut(s)	27, 103, 204
AluI	AGCT	3 cut(s)	27, 103, 204
Alw21I	GWGCWC	2 cut(s)	29, 366
Alw26I	GTCTC	1 cut(s)	81
AlwI	GGATC	1 cut(s)	179
AlwNI	CAGNNNCTG	1 cut(s)	266
AoxI	GGCC	1 cut(s)	14
ApeKI	GCWGC	2 cut(s)	103, 210
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
BalI	TGGCCA	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	29
Bbv12I	GWGCWC	2 cut(s)	29, 366
BbvI	GCAGC	2 cut(s)	90, 222
BccI	CCATC	3 cut(s)	25, 107, 134
BclI	TGATCA	1 cut(s)	352
BcoDI	GTCTC	1 cut(s)	81
BcuI	ACTAGT	1 cut(s)	193
BfaI	CTAG	3 cut(s)	177, 194, 342
BfmI	CTRYAG	1 cut(s)	66
BisI	GCNGC	2 cut(s)	104, 211
BlsI	GCNGC	2 cut(s)	105, 212
BmeRI	GACNNNNNGTC	1 cut(s)	94
BmsI	GCATC	1 cut(s)	143
BpmI	CTGGAG	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseRI	GAGGAG	2 cut(s)	264, 320
BseXI	GCAGC	2 cut(s)	90, 222
BshFI	GGCC	1 cut(s)	16
BsiHKAI	GWGCWC	2 cut(s)	29, 366
BslFI	GGGAC	1 cut(s)	184
BslI	CCNNNNNNNGG	1 cut(s)	245
BsmAI	GTCTC	1 cut(s)	81
BsmFI	GGGAC	1 cut(s)	184
BsmI	GAATGC	1 cut(s)	60
BsnI	GGCC	1 cut(s)	16
Bsp1286I	GDGCHC	2 cut(s)	29, 366
Bsp143I	GATC	2 cut(s)	184, 352
BspACI	CCGC	1 cut(s)	36
BspANI	GGCC	1 cut(s)	16
BspPI	GGATC	1 cut(s)	179
BspQI	GCTCTTC	1 cut(s)	354
BssMI	GATC	2 cut(s)	184, 352
Bst4CI	ACNGT	1 cut(s)	224
Bst6I	CTCTTC	1 cut(s)	354
BstKTI	GATC	2 cut(s)	187, 355
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	2 cut(s)	184, 352
BstMWI	GCNNNNNNNGC	1 cut(s)	210
BstNSI	RCATGY	1 cut(s)	370
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	2 cut(s)	90, 222
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	16
CaiI	CAGNNNCTG	1 cut(s)	266
CviAII	CATG	1 cut(s)	367
CviJI	RGCY	5 cut(s)	16, 27, 103, 204, 299
CviKI_1	RGCY	5 cut(s)	16, 27, 103, 204, 299
DpnI	GATC	2 cut(s)	186, 354
DpnII	GATC	2 cut(s)	184, 352
DriI	GACNNNNNGTC	1 cut(s)	94
EaeI	YGGCCR	1 cut(s)	14
Eam1104I	CTCTTC	1 cut(s)	354
Eam1105I	GACNNNNNGTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	354
Ecl136II	GAGCTC	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	29
Eco53kI	GAGCTC	1 cut(s)	27
EcoICRI	GAGCTC	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	29
FaeI	CATG	1 cut(s)	370
FaiI	YATR	1 cut(s)	368
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	1 cut(s)	366
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	2 cut(s)	104, 211
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	2 cut(s)	104, 211
FspBI	CTAG	3 cut(s)	177, 194, 342
GluI	GCNGC	2 cut(s)	104, 211
GsuI	CTGGAG	1 cut(s)	190
HaeIII	GGCC	1 cut(s)	16
Hin1II	CATG	1 cut(s)	370
HinfI	GANTC	3 cut(s)	71, 132, 315
Hpy188I	TCNGA	3 cut(s)	100, 131, 262
Hpy188III	TCNNGA	1 cut(s)	356
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4V	TGCA	3 cut(s)	106, 156, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	210
Hsp92II	CATG	1 cut(s)	370
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	2 cut(s)	184, 352
LguI	GCTCTTC	1 cut(s)	354
LmnI	GCTCC	1 cut(s)	209
LpnPI	CCDG	4 cut(s)	76, 220, 278, 279
Lsp1109I	GCAGC	2 cut(s)	90, 222
LweI	GCATC	1 cut(s)	143
MaeI	CTAG	3 cut(s)	177, 194, 342
MaeIII	GTNAC	2 cut(s)	72, 224
MalI	GATC	2 cut(s)	186, 354
MboI	GATC	2 cut(s)	184, 352
MboII	GAAGA	1 cut(s)	371
MfeI	CAATTG	2 cut(s)	39, 216
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	2 cut(s)	29, 366
MlsI	TGGCCA	1 cut(s)	16
MluCI	AATT	2 cut(s)	39, 216
MluNI	TGGCCA	1 cut(s)	16
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	6 cut(s)	43, 242, 245, 249, 298, 330
Mox20I	TGGCCA	1 cut(s)	16
MscI	TGGCCA	1 cut(s)	16
MseI	TTAA	1 cut(s)	332
MslI	CAYNNNNRTG	1 cut(s)	81
Msp20I	TGGCCA	1 cut(s)	16
MunI	CAATTG	2 cut(s)	39, 216
Mva1269I	GAATGC	1 cut(s)	60
MwoI	GCNNNNNNNGC	1 cut(s)	210
NdeII	GATC	2 cut(s)	184, 352
NlaIII	CATG	1 cut(s)	370
NmuCI	GTSAC	1 cut(s)	72
NspI	RCATGY	1 cut(s)	370
PciI	ACATGT	1 cut(s)	366
PciSI	GCTCTTC	1 cut(s)	354
PctI	GAATGC	1 cut(s)	60
PfeI	GAWTC	2 cut(s)	132, 315
PkrI	GCNGC	2 cut(s)	105, 212
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PscI	ACATGT	1 cut(s)	366
Psp124BI	GAGCTC	1 cut(s)	29
PstNI	CAGNNNCTG	1 cut(s)	266
PsuI	RGATCY	1 cut(s)	184
RseI	CAYNNNNRTG	1 cut(s)	81
SacI	GAGCTC	1 cut(s)	29
SapI	GCTCTTC	1 cut(s)	354
SaqAI	TTAA	1 cut(s)	332
SatI	GCNGC	2 cut(s)	104, 211
Sau3AI	GATC	2 cut(s)	184, 352
SchI	GAGTC	1 cut(s)	80
SduI	GDGCHC	2 cut(s)	29, 366
SetI	ASST	4 cut(s)	29, 105, 206, 290
SfaNI	GCATC	1 cut(s)	143
SfcI	CTRYAG	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	81
SpeI	ACTAGT	1 cut(s)	193
Sse9I	AATT	2 cut(s)	39, 216
SsiI	CCGC	1 cut(s)	36
SspMI	CTAG	3 cut(s)	177, 194, 342
SstI	GAGCTC	1 cut(s)	29
TaaI	ACNGT	1 cut(s)	224
TasI	AATT	2 cut(s)	39, 216
TfiI	GAWTC	2 cut(s)	132, 315
Tru1I	TTAA	1 cut(s)	332
Tru9I	TTAA	1 cut(s)	332
TseFI	GTSAC	1 cut(s)	72
TseI	GCWGC	2 cut(s)	103, 210
Tsp45I	GTSAC	1 cut(s)	72
TspGWI	ACGGA	1 cut(s)	312
XceI	RCATGY	1 cut(s)	370
XspI	CTAG	3 cut(s)	177, 194, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.