Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0013764

Physical Location & Seq

Genomic Coordinates Reverse (-)

77920213 .. 77921103

Gene Structure 891 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0582200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGACAGAACAATATGCAATAGTCGTGCATCTAAGCCTCGTGAGGAGACCGGGCTTATTAGGCTGGATCCGTTTGTGATCGGCAATGGCAGTGCTAGTAGTGGTAGGCCTAATTGTGATGAGATTGTTGACGATGATCAGTACCGATTTCGTCTATTTGATGCAGTTGAGAATCTTTTAGACAGGCCATGGATACGTGTGCGCCAAGGGCGTCTACAAATGTGGGCCTACTATCACTGGGATTATAATTTTATTGTTTGGGAGTTAACAGGTAATGATGATCTTGGATCAGCTGACAAATTGTATTTGAAAGAATTGAGTGTTTATCCGGTAACCAGCAAAGTTCTTGAATATGATGATGGAGCTGTTCTTCTAGCTTTGGAACCGAATGATGAGGATATCGTTTATGTAAAAAGCTACCCAATATGCTATTTCATGTACAACATTCGTAGAAGAAGGTGGTCAAAAGTAGCTAGCACCAAGTATTTTGAAGAGTTGTGGTCAGACAATCATCTCTTTCGATTGGTGCTCCCATGGTGGCCAACACCACTTCGTAGACTACCAATGGTTGAAGAATTACCCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 ko04146 map00760 map01100 map04146

Pfam Domains

Protein Families

NUDIX NUDIX-like zf-NADH-PPase

Protein Analysis

195

Amino Acids

23.21

Weight (kDa)

5.17

Isoelectric Point (pI)

40.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013764)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0069471 RchiOBHm_Chr5g0069531
rosa_laevigata	RLG00000001259 RLG00000009439 RLG00000036056
rosa_multiflora	Rmu_co8443991.1_g000001 Rmu_sc0000738.1_g000039
rosa_roxburghii	Rroxscaffold_1G00011460 Rroxscaffold_1G00015510
rosa_rugosa	Rorug05G0582200
rosa_samantha	Rh5AG455400 Rh5BG474200 Rh5BG474500 Rh5CG496600 Rh5CG496900 Rh5DG486000 Rh7BG340900
rosa_wichuraiana	Rw0G023030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	246
AccI	GTMKAC	2 cut(s)	214, 556
AclWI	GGATC	3 cut(s)	62, 75, 295
AcoI	YGGCCR	1 cut(s)	539
AcyI	GRCGYC	1 cut(s)	211
AfaI	GTAC	2 cut(s)	143, 440
AflIII	ACRYGT	1 cut(s)	196
AgsI	TTSAA	4 cut(s)	310, 350, 491, 572
AluBI	AGCT	5 cut(s)	293, 365, 377, 417, 473
AluI	AGCT	5 cut(s)	293, 365, 377, 417, 473
Alw21I	GWGCWC	1 cut(s)	531
Alw26I	GTCTC	1 cut(s)	41
AlwI	GGATC	3 cut(s)	62, 75, 295
AoxI	GGCC	4 cut(s)	107, 185, 225, 539
AspLEI	GCGC	1 cut(s)	204
AspS9I	GGNCC	1 cut(s)	225
AsuC2I	CCSGG	1 cut(s)	52
AsuNHI	GCTAGC	1 cut(s)	473
BalI	TGGCCA	1 cut(s)	541
BamHI	GGATCC	1 cut(s)	67
BauI	CACGAG	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	531
BccI	CCATC	1 cut(s)	353
BciVI	GTATCC	1 cut(s)	186
BclI	TGATCA	1 cut(s)	136
BcnI	CCSGG	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	3 cut(s)	96, 374, 474
BfuI	GTATCC	1 cut(s)	186
Bme1390I	CCNGG	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	225
BmiI	GGNNCC	2 cut(s)	69, 384
BmrFI	CCNGG	1 cut(s)	52
BmrI	ACTGGG	1 cut(s)	247
BmsI	GCATC	2 cut(s)	38, 151
BmtI	GCTAGC	1 cut(s)	477
BmuI	ACTGGG	1 cut(s)	247
BpuMI	CCSGG	1 cut(s)	52
BsaAI	YACGTR	1 cut(s)	197
BsaHI	GRCGYC	1 cut(s)	211
BsaI	GGTCTC	1 cut(s)	41
BsaJI	CCNNGG	3 cut(s)	188, 205, 533
BsaWI	WCCGGW	1 cut(s)	328
Bse1I	ACTGG	1 cut(s)	242
Bse3DI	GCAATG	1 cut(s)	91
BseDI	CCNNGG	3 cut(s)	188, 205, 533
BseMI	GCAATG	1 cut(s)	91
BseNI	ACTGG	1 cut(s)	242
BseRI	GAGGAG	1 cut(s)	59
BshFI	GGCC	4 cut(s)	109, 187, 227, 541
BsiHKAI	GWGCWC	1 cut(s)	531
BsiSI	CCGG	2 cut(s)	51, 329
BsmAI	GTCTC	1 cut(s)	41
BsnI	GGCC	4 cut(s)	109, 187, 227, 541
Bso31I	GGTCTC	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp1407I	TGTACA	1 cut(s)	438
Bsp143I	GATC	5 cut(s)	67, 78, 136, 280, 287
Bsp19I	CCATGG	2 cut(s)	188, 533
BspANI	GGCC	4 cut(s)	109, 187, 227, 541
BspLI	GGNNCC	2 cut(s)	69, 384
BspOI	GCTAGC	1 cut(s)	477
BspPI	GGATC	3 cut(s)	62, 75, 295
BspTNI	GGTCTC	1 cut(s)	41
BsrDI	GCAATG	1 cut(s)	91
BsrGI	TGTACA	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	242
BssECI	CCNNGG	3 cut(s)	188, 205, 533
BssMI	GATC	5 cut(s)	67, 78, 136, 280, 287
BssNI	GRCGYC	1 cut(s)	211
BssSI	CACGAG	1 cut(s)	39
BssT1I	CCWWGG	3 cut(s)	188, 205, 533
Bst2BI	CACGAG	1 cut(s)	39
Bst6I	CTCTTC	1 cut(s)	486
BstACI	GRCGYC	1 cut(s)	211
BstAUI	TGTACA	1 cut(s)	438
BstBAI	YACGTR	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	475
BstDEI	CTNAG	1 cut(s)	33
BstDSI	CCRYGG	2 cut(s)	188, 533
BstEII	GGTNACC	1 cut(s)	331
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	5 cut(s)	70, 81, 139, 283, 290
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	5 cut(s)	67, 78, 136, 280, 287
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 208
BstPI	GGTNACC	1 cut(s)	331
BstSCI	CCNGG	1 cut(s)	50
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BsuI	GTATCC	1 cut(s)	186
BsuRI	GGCC	4 cut(s)	109, 187, 227, 541
BtgI	CCRYGG	2 cut(s)	188, 533
BtsI	GCAGTG	1 cut(s)	97
BtsIMutI	CAGTG	2 cut(s)	97, 235
Cac8I	GCNNGC	1 cut(s)	475
CfoI	GCGC	1 cut(s)	204
Cfr13I	GGNCC	1 cut(s)	225
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	2 cut(s)	142, 439
CviAII	CATG	3 cut(s)	189, 436, 534
CviQI	GTAC	2 cut(s)	142, 439
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	5 cut(s)	69, 80, 138, 282, 289
DpnII	GATC	5 cut(s)	67, 78, 136, 280, 287
EaeI	YGGCCR	1 cut(s)	539
Eam1104I	CTCTTC	1 cut(s)	486
EarI	CTCTTC	1 cut(s)	486
Eco130I	CCWWGG	3 cut(s)	188, 205, 533
Eco147I	AGGCCT	1 cut(s)	109
Eco31I	GGTCTC	1 cut(s)	41
Eco32I	GATATC	1 cut(s)	400
Eco91I	GGTNACC	1 cut(s)	331
EcoO65I	GGTNACC	1 cut(s)	331
EcoRV	GATATC	1 cut(s)	400
EcoT14I	CCWWGG	3 cut(s)	188, 205, 533
ErhI	CCWWGG	3 cut(s)	188, 205, 533
FaeI	CATG	3 cut(s)	192, 439, 537
FatI	CATG	3 cut(s)	188, 435, 533
FbaI	TGATCA	1 cut(s)	136
FblI	GTMKAC	2 cut(s)	214, 556
FspBI	CTAG	3 cut(s)	96, 374, 474
GlaI	GCGC	1 cut(s)	203
HaeIII	GGCC	4 cut(s)	109, 187, 227, 541
HapII	CCGG	2 cut(s)	51, 329
HgaI	GACGC	1 cut(s)	200
HhaI	GCGC	1 cut(s)	204
Hin1I	GRCGYC	1 cut(s)	211
Hin1II	CATG	3 cut(s)	192, 439, 537
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HincII	GTYRAC	2 cut(s)	130, 267
HindII	GTYRAC	2 cut(s)	130, 267
HinfI	GANTC	1 cut(s)	172
HpaI	GTTAAC	1 cut(s)	267
HpaII	CCGG	2 cut(s)	51, 329
Hpy166II	GTNNAC	4 cut(s)	130, 215, 267, 557
Hpy188I	TCNGA	1 cut(s)	505
Hpy188III	TCNNGA	2 cut(s)	41, 347
Hpy8I	GTNNAC	4 cut(s)	130, 215, 267, 557
HpyAV	CCTTC	1 cut(s)	450
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	3 cut(s)	18, 29, 164
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 208
HpyF3I	CTNAG	1 cut(s)	33
HpySE526I	ACGT	1 cut(s)	196
Hsp92I	GRCGYC	1 cut(s)	211
Hsp92II	CATG	3 cut(s)	192, 439, 537
HspAI	GCGC	1 cut(s)	202
Ksp22I	TGATCA	1 cut(s)	136
KspAI	GTTAAC	1 cut(s)	267
Kzo9I	GATC	5 cut(s)	67, 78, 136, 280, 287
LmnI	GCTCC	2 cut(s)	362, 534
LpnPI	CCDG	7 cut(s)	50, 64, 169, 223, 255, 342, 349
LweI	GCATC	2 cut(s)	38, 151
MaeI	CTAG	3 cut(s)	96, 374, 474
MaeII	ACGT	1 cut(s)	196
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	5 cut(s)	69, 80, 138, 282, 289
MboI	GATC	5 cut(s)	67, 78, 136, 280, 287
MboII	GAAGA	4 cut(s)	362, 465, 503, 584
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	531
MlsI	TGGCCA	1 cut(s)	541
MluCI	AATT	5 cut(s)	112, 247, 299, 314, 575
MluNI	TGGCCA	1 cut(s)	541
MnlI	CCTC	3 cut(s)	37, 48, 388
Mox20I	TGGCCA	1 cut(s)	541
MscI	TGGCCA	1 cut(s)	541
MseI	TTAA	1 cut(s)	266
Msp20I	TGGCCA	1 cut(s)	541
MspA1I	CMGCKG	1 cut(s)	293
MspI	CCGG	2 cut(s)	51, 329
MspR9I	CCNGG	1 cut(s)	52
MwoI	GCNNNNNNNGC	2 cut(s)	61, 208
NciI	CCSGG	1 cut(s)	52
NcoI	CCATGG	2 cut(s)	188, 533
NdeII	GATC	5 cut(s)	67, 78, 136, 280, 287
NheI	GCTAGC	1 cut(s)	473
NlaIII	CATG	3 cut(s)	192, 439, 537
NlaIV	GGNNCC	2 cut(s)	69, 384
PceI	AGGCCT	1 cut(s)	109
PfeI	GAWTC	1 cut(s)	172
Ppu21I	YACGTR	1 cut(s)	197
PsiI	TTATAA	1 cut(s)	246
PspEI	GGTNACC	1 cut(s)	331
PspN4I	GGNNCC	2 cut(s)	69, 384
PspPI	GGNCC	1 cut(s)	225
PsuI	RGATCY	1 cut(s)	67
PvuII	CAGCTG	1 cut(s)	293
RsaI	GTAC	2 cut(s)	143, 440
RsaNI	GTAC	2 cut(s)	142, 439
SaqAI	TTAA	1 cut(s)	266
Sau3AI	GATC	5 cut(s)	67, 78, 136, 280, 287
Sau96I	GGNCC	1 cut(s)	225
ScrFI	CCNGG	1 cut(s)	52
SduI	GDGCHC	1 cut(s)	531
SetI	ASST	8 cut(s)	199, 274, 295, 367, 379, 419, 461, 475
SfaNI	GCATC	2 cut(s)	38, 151
Sse9I	AATT	5 cut(s)	112, 247, 299, 314, 575
SseBI	AGGCCT	1 cut(s)	109
SspMI	CTAG	3 cut(s)	96, 374, 474
StuI	AGGCCT	1 cut(s)	109
StyD4I	CCNGG	1 cut(s)	50
StyI	CCWWGG	3 cut(s)	188, 205, 533
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	520
TasI	AATT	5 cut(s)	112, 247, 299, 314, 575
TatI	WGTACW	1 cut(s)	438
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	1 cut(s)	266
Tru9I	TTAA	1 cut(s)	266
TscAI	CASTG	2 cut(s)	97, 242
TspDTI	ATGAA	1 cut(s)	424
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	2 cut(s)	97, 242
XmiI	GTMKAC	2 cut(s)	214, 556
XspI	CTAG	3 cut(s)	96, 374, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.