Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0013764

Physical Location & Seq

Genomic Coordinates Forward (+)

35579017 .. 35593284

Gene Structure 14268 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG340900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGCTTATAACCCTCCAACTTTCTTCACCAAACGATTTGGCTGATTGTAAAGGCTTGTTGGGTAATTGTGGGGTTGAGTTGAGTGGTGACTCATTGGTGTATCTGGGTTCAAGGCCTGAGGAGGATGCGGTTTATTGGGCTATTGATGTGTCTAAGGAGGATGGTGTGGTTCCTGAATTGGGTGGGAAGCAATTGTGTTTTGTTGAGCTCAGAACACTTATGGTGGCTACTGATTGGGCTGATGAAAGGGCTATGGCAGCGTTGGCTGTTGCTGGTCATGCCAGGGCTTTGCTTGAGTGGCACAATTCATCACTGTTTTGTGGACATTGTGGAGAAAAGACGGTCCCCAAGGAAGCTGGGAGACGCAAGCAGTGTTCTAGTGAGCTGTGCAGAAAGCGGGTCTACCCTCGTGTTGATCCGGTTGTCATAATGTTAGTGATTGATAAAGAGAATGATCGTGCTCTGTTGAGTAGACAATCCCGATTTGTACCTAGAATGTGGAGTTGCTTAGCTGGTTTTATAGAGCCAGGAGAAAGCTTAGAAGAAACGGTGAAGAGAGAAACATGGGAGGAGACCGATATTGAAGTAGGAGAAGTTGTCTATCATAGCTCTCAACCATGGCCTGTTGGACTTGGTTTATATCATCCATTCTTTATCAATTGCTATAGGGACGATGTAGTTCCAATTAGATGGCCAGTGGAATATTCAAGCAGTTGCAGTGAATCTGATCCTCTGGAGTTCCTTTCAACACCATTATCTTGTCTTGCTCTGAGGGACGAGCCAGCTGAAAATTCAACTGCATCTTATATGAGAAATAATGCATCCAACATGAGTGGAAAGAAGGCCACCGGATCAAAACCAAGGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 ko04146 map00760 map01100 map04146

Pfam Domains

Protein Families

NUDIX NUDIX-like zf-NADH-PPase

Protein Analysis

289

Amino Acids

32.24

Weight (kDa)

5.06

Isoelectric Point (pI)

54.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_NUD	PF09297	103 - 135	3.1e-07	NADH pyrophosphatase zinc ribbon domain
NUDIX	PF00293	141 - 203	8.9e-13	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013764)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0069471 RchiOBHm_Chr5g0069531
rosa_laevigata	RLG00000001259 RLG00000009439 RLG00000036056
rosa_multiflora	Rmu_co8443991.1_g000001 Rmu_sc0000738.1_g000039
rosa_roxburghii	Rroxscaffold_1G00011460 Rroxscaffold_1G00015510
rosa_rugosa	Rorug05G0582200
rosa_samantha	Rh5AG455400 Rh5BG474200 Rh5BG474500 Rh5CG496600 Rh5CG496900 Rh5DG486000 Rh7BG340900
rosa_wichuraiana	Rw0G023030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	8
AccI	GTMKAC	2 cut(s)	402, 472
AciI	CCGC	2 cut(s)	128, 397
AclWI	GGATC	3 cut(s)	410, 722, 859
AcoI	YGGCCR	1 cut(s)	692
AcsI	RAATTY	1 cut(s)	790
AfaI	GTAC	1 cut(s)	489
AfiI	CCNNNNNNNGG	1 cut(s)	179
AgsI	TTSAA	5 cut(s)	111, 584, 708, 747, 795
AjnI	CCWGG	2 cut(s)	281, 526
AluBI	AGCT	7 cut(s)	208, 356, 385, 512, 537, 609, 785
AluI	AGCT	7 cut(s)	208, 356, 385, 512, 537, 609, 785
Alw21I	GWGCWC	2 cut(s)	210, 463
Alw26I	GTCTC	2 cut(s)	355, 566
AlwI	GGATC	3 cut(s)	410, 722, 859
AoxI	GGCC	4 cut(s)	113, 620, 692, 843
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	1 cut(s)	790
AspS9I	GGNCC	1 cut(s)	343
AsuHPI	GGTGA	3 cut(s)	18, 98, 562
AvaII	GGWCC	1 cut(s)	343
AxyI	CCTNAGG	1 cut(s)	117
BalI	TGGCCA	1 cut(s)	694
BanII	GRGCYC	1 cut(s)	210
BauI	CACGAG	1 cut(s)	408
Bbv12I	GWGCWC	2 cut(s)	210, 463
BbvI	GCAGC	1 cut(s)	269
BccI	CCATC	2 cut(s)	155, 684
BciT130I	CCWGG	2 cut(s)	283, 528
BcoDI	GTCTC	2 cut(s)	355, 566
BfaI	CTAG	2 cut(s)	378, 492
BfmI	CTRYAG	1 cut(s)	664
BisI	GCNGC	1 cut(s)	258
BlpI	GCTNAGC	1 cut(s)	508
BlsI	GCNGC	1 cut(s)	259
Bme1390I	CCNGG	2 cut(s)	283, 528
Bme18I	GGWCC	1 cut(s)	343
BmgT120I	GGNCC	1 cut(s)	343
BmiI	GGNNCC	2 cut(s)	171, 345
BmrFI	CCNGG	2 cut(s)	283, 528
BmsI	GCATC	3 cut(s)	115, 809, 830
BpmI	CTGGAG	1 cut(s)	755
Bpu1102I	GCTNAGC	1 cut(s)	508
BpuEI	CTTGAG	1 cut(s)	314
BsaI	GGTCTC	1 cut(s)	566
BsaJI	CCNNGG	4 cut(s)	282, 348, 617, 860
BsaWI	WCCGGW	2 cut(s)	418, 848
BsaXI	ACNNNNNCTCC	2 cut(s)	582, 612
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse1I	ACTGG	1 cut(s)	695
Bse21I	CCTNAGG	1 cut(s)	117
BseBI	CCWGG	2 cut(s)	283, 528
BseDI	CCNNGG	4 cut(s)	282, 348, 617, 860
BseGI	GGATG	4 cut(s)	130, 166, 643, 821
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMII	CTCAG	3 cut(s)	108, 223, 761
BseNI	ACTGG	1 cut(s)	695
BseRI	GAGGAG	2 cut(s)	134, 584
BseXI	GCAGC	1 cut(s)	269
BseYI	CCCAGC	1 cut(s)	356
BsgI	GTGCAG	1 cut(s)	409
BshFI	GGCC	4 cut(s)	115, 622, 694, 845
BsiHKAI	GWGCWC	2 cut(s)	210, 463
BsiSI	CCGG	2 cut(s)	419, 849
BslFI	GGGAC	3 cut(s)	329, 683, 788
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmAI	GTCTC	2 cut(s)	355, 566
BsmBI	CGTCTC	1 cut(s)	355
BsmFI	GGGAC	3 cut(s)	329, 683, 788
BsnI	GGCC	4 cut(s)	115, 622, 694, 845
Bso31I	GGTCTC	1 cut(s)	566
Bsp1286I	GDGCHC	2 cut(s)	210, 463
Bsp143I	GATC	4 cut(s)	415, 454, 727, 851
Bsp1720I	GCTNAGC	1 cut(s)	508
Bsp19I	CCATGG	1 cut(s)	617
BspACI	CCGC	2 cut(s)	128, 397
BspANI	GGCC	4 cut(s)	115, 622, 694, 845
BspCNI	CTCAG	3 cut(s)	109, 222, 762
BspLI	GGNNCC	2 cut(s)	171, 345
BspPI	GGATC	3 cut(s)	410, 722, 859
BspTNI	GGTCTC	1 cut(s)	566
BsrI	ACTGG	1 cut(s)	695
BssECI	CCNNGG	4 cut(s)	282, 348, 617, 860
BssMI	GATC	4 cut(s)	415, 454, 727, 851
BssSI	CACGAG	1 cut(s)	408
BssT1I	CCWWGG	3 cut(s)	348, 617, 860
Bst2BI	CACGAG	1 cut(s)	408
Bst2UI	CCWGG	2 cut(s)	283, 528
Bst4CI	ACNGT	3 cut(s)	315, 343, 550
Bst6I	CTCTTC	1 cut(s)	548
BstC8I	GCNNGC	2 cut(s)	368, 783
BstDEI	CTNAG	6 cut(s)	117, 153, 209, 508, 538, 770
BstDSI	CCRYGG	1 cut(s)	617
BstF5I	GGATG	4 cut(s)	130, 166, 643, 821
BstKTI	GATC	4 cut(s)	418, 457, 730, 854
BstMAI	GTCTC	2 cut(s)	355, 566
BstMBI	GATC	4 cut(s)	415, 454, 727, 851
BstMWI	GCNNNNNNNGC	4 cut(s)	257, 263, 278, 298
BstNI	CCWGG	2 cut(s)	283, 528
BstSCI	CCNGG	2 cut(s)	281, 526
BstSFI	CTRYAG	1 cut(s)	664
BstV1I	GCAGC	1 cut(s)	269
BstXI	CCANNNNNNTGG	1 cut(s)	690
Bsu36I	CCTNAGG	1 cut(s)	117
BsuRI	GGCC	4 cut(s)	115, 622, 694, 845
BtgI	CCRYGG	1 cut(s)	617
BtsCI	GGATG	4 cut(s)	130, 166, 643, 821
BtsI	GCAGTG	2 cut(s)	377, 724
BtsIMutI	CAGTG	4 cut(s)	311, 377, 702, 724
Cac8I	GCNNGC	2 cut(s)	368, 783
Cfr13I	GGNCC	1 cut(s)	343
CseI	GACGC	1 cut(s)	372
Csp6I	GTAC	1 cut(s)	488
CspCI	CAANNNNNGTGG	2 cut(s)	814, 849
CviAII	CATG	4 cut(s)	278, 564, 618, 829
CviQI	GTAC	1 cut(s)	488
DdeI	CTNAG	6 cut(s)	117, 153, 209, 508, 538, 770
DpnI	GATC	4 cut(s)	417, 456, 729, 853
DpnII	GATC	4 cut(s)	415, 454, 727, 851
EaeI	YGGCCR	1 cut(s)	692
Eam1104I	CTCTTC	1 cut(s)	548
EarI	CTCTTC	1 cut(s)	548
Ecl136II	GAGCTC	1 cut(s)	208
Eco130I	CCWWGG	3 cut(s)	348, 617, 860
Eco147I	AGGCCT	1 cut(s)	115
Eco24I	GRGCYC	1 cut(s)	210
Eco31I	GGTCTC	1 cut(s)	566
Eco47I	GGWCC	1 cut(s)	343
Eco53kI	GAGCTC	1 cut(s)	208
Eco81I	CCTNAGG	1 cut(s)	117
EcoICRI	GAGCTC	1 cut(s)	208
EcoRII	CCWGG	2 cut(s)	281, 526
EcoT14I	CCWWGG	3 cut(s)	348, 617, 860
EcoT22I	ATGCAT	1 cut(s)	823
EcoT38I	GRGCYC	1 cut(s)	210
ErhI	CCWWGG	3 cut(s)	348, 617, 860
Esp3I	CGTCTC	1 cut(s)	355
FaeI	CATG	4 cut(s)	281, 567, 621, 832
FaqI	GGGAC	3 cut(s)	329, 683, 788
FatI	CATG	4 cut(s)	277, 563, 617, 828
FauI	CCCGC	1 cut(s)	390
FblI	GTMKAC	2 cut(s)	402, 472
Fnu4HI	GCNGC	1 cut(s)	258
FokI	GGATG	4 cut(s)	137, 173, 630, 808
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	2 cut(s)	378, 492
GluI	GCNGC	1 cut(s)	258
GsaI	CCCAGC	1 cut(s)	360
GsuI	CTGGAG	1 cut(s)	755
HaeIII	GGCC	4 cut(s)	115, 622, 694, 845
HapII	CCGG	2 cut(s)	419, 849
HgaI	GACGC	1 cut(s)	372
Hin1II	CATG	4 cut(s)	281, 567, 621, 832
HindIII	AAGCTT	1 cut(s)	535
HinfI	GANTC	2 cut(s)	89, 722
HpaII	CCGG	2 cut(s)	419, 849
HphI	GGTGA	3 cut(s)	18, 98, 562
Hpy166II	GTNNAC	3 cut(s)	323, 403, 473
Hpy188I	TCNGA	3 cut(s)	212, 727, 771
Hpy188III	TCNNGA	3 cut(s)	173, 480, 734
Hpy8I	GTNNAC	3 cut(s)	323, 403, 473
HpyAV	CCTTC	1 cut(s)	835
HpyCH4III	ACNGT	3 cut(s)	315, 343, 550
HpyCH4V	TGCA	4 cut(s)	390, 717, 800, 821
HpyF10VI	GCNNNNNNNGC	4 cut(s)	257, 263, 278, 298
HpyF3I	CTNAG	6 cut(s)	117, 153, 209, 508, 538, 770
Hsp92II	CATG	4 cut(s)	281, 567, 621, 832
Kzo9I	GATC	4 cut(s)	415, 454, 727, 851
Lsp1109I	GCAGC	1 cut(s)	269
LweI	GCATC	3 cut(s)	115, 809, 830
MaeI	CTAG	2 cut(s)	378, 492
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	4 cut(s)	417, 456, 729, 853
MboI	GATC	4 cut(s)	415, 454, 727, 851
MboII	GAAGA	3 cut(s)	15, 554, 565
MfeI	CAATTG	2 cut(s)	191, 658
MhlI	GDGCHC	2 cut(s)	210, 463
MlsI	TGGCCA	1 cut(s)	694
MluCI	AATT	7 cut(s)	64, 176, 191, 304, 658, 684, 790
MluNI	TGGCCA	1 cut(s)	694
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	3 cut(s)	40, 607, 849
MnlI	CCTC	8 cut(s)	23, 112, 115, 151, 417, 562, 741, 765
Mox20I	TGGCCA	1 cut(s)	694
Mph1103I	ATGCAT	1 cut(s)	823
MscI	TGGCCA	1 cut(s)	694
Msp20I	TGGCCA	1 cut(s)	694
MspA1I	CMGCKG	1 cut(s)	785
MspI	CCGG	2 cut(s)	419, 849
MspR9I	CCNGG	2 cut(s)	283, 528
MunI	CAATTG	2 cut(s)	191, 658
MvaI	CCWGG	2 cut(s)	283, 528
MwoI	GCNNNNNNNGC	4 cut(s)	257, 263, 278, 298
NcoI	CCATGG	1 cut(s)	617
NdeII	GATC	4 cut(s)	415, 454, 727, 851
NlaIII	CATG	4 cut(s)	281, 567, 621, 832
NlaIV	GGNNCC	2 cut(s)	171, 345
NmuCI	GTSAC	1 cut(s)	86
NsiI	ATGCAT	1 cut(s)	823
PceI	AGGCCT	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	722
PkrI	GCNGC	1 cut(s)	259
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
PsiI	TTATAA	1 cut(s)	8
Psp124BI	GAGCTC	1 cut(s)	210
Psp6I	CCWGG	2 cut(s)	281, 526
PspFI	CCCAGC	1 cut(s)	356
PspGI	CCWGG	2 cut(s)	281, 526
PspN4I	GGNNCC	2 cut(s)	171, 345
PspPI	GGNCC	1 cut(s)	343
PvuII	CAGCTG	1 cut(s)	785
RsaI	GTAC	1 cut(s)	489
RsaNI	GTAC	1 cut(s)	488
SacI	GAGCTC	1 cut(s)	210
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	4 cut(s)	415, 454, 727, 851
Sau96I	GGNCC	1 cut(s)	343
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	2 cut(s)	283, 528
SduI	GDGCHC	2 cut(s)	210, 463
SetI	ASST	9 cut(s)	210, 358, 387, 493, 514, 539, 611, 787, 866
SfaNI	GCATC	3 cut(s)	115, 809, 830
SfcI	CTRYAG	1 cut(s)	664
SinI	GGWCC	1 cut(s)	343
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	7 cut(s)	64, 176, 191, 304, 658, 684, 790
SseBI	AGGCCT	1 cut(s)	115
SsiI	CCGC	2 cut(s)	128, 397
SspI	AATATT	1 cut(s)	704
SspMI	CTAG	2 cut(s)	378, 492
SstI	GAGCTC	1 cut(s)	210
StuI	AGGCCT	1 cut(s)	115
StyD4I	CCNGG	2 cut(s)	281, 526
StyI	CCWWGG	3 cut(s)	348, 617, 860
TaaI	ACNGT	3 cut(s)	315, 343, 550
TaqII	GACCGA	1 cut(s)	590
TasI	AATT	7 cut(s)	64, 176, 191, 304, 658, 684, 790
TfiI	GAWTC	1 cut(s)	722
TscAI	CASTG	4 cut(s)	318, 377, 702, 724
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	2 cut(s)	258, 297
TspRI	CASTG	4 cut(s)	318, 377, 702, 724
VpaK11BI	GGWCC	1 cut(s)	343
XapI	RAATTY	1 cut(s)	790
XmiI	GTMKAC	2 cut(s)	402, 472
XspI	CTAG	2 cut(s)	378, 492
Zsp2I	ATGCAT	1 cut(s)	823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.