RLG00000002651

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0015766
Physical Location & Seq
Forward (+)
37543175 .. 37544925
1751 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002651

Sequence Viewer

Length: 480 bp
ATGTATGTTGGCATCTTTGGAAGATGGAGAGAAAGAAAAGAATATTTCAAGTTGTATTCCAAATGGCTTCTGGGTTTCATATCAATAATGGTGATTAATTCTGATTCTGAGGTTTTAGTGGGGCTTTTCTATATGGAAGAAAATGATCTTCCTCCCCTTGGTGCCGTGCTAACTAGTTGCAGATCGATCTTCTGCTACAAGGGTGTGTTTGGTAACTGTGCGCCCGACGAAGACGATGAACTCCTTGACGCTGGACCTCTGGAAGTAGCCGAAGTGGGAGGTTTCGAAGGCGTTGGCCAATATGACCGGGTCGGATCCTTCCGGGTTGCACTTGATGACCAGCAAGGCCATGATCTTCGTCGCAGCGAAGGTGGTATACCGGATTGTGACTCAGAGACGACGATTCGTGTTCCGGCAATTCAGGACCTCGACTCATTCATGAAGAGCTTCCGGCGATGGAGGACGAGCTCTGATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.98

Weight (kDa)

4.55

Isoelectric Point (pI)

55.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 161
AccI GTMKAC 1 cut(s) 376
AclWI GGATC 3 cut(s) 309, 322, 467
AcoI YGGCCR 1 cut(s) 295
AfiI CCNNNNNNNGG 1 cut(s) 158
AgsI TTSAA 1 cut(s) 49
AhlI ACTAGT 1 cut(s) 173
AluBI AGCT 2 cut(s) 447, 468
AluI AGCT 2 cut(s) 447, 468
Alw21I GWGCWC 1 cut(s) 470
Alw26I GTCTC 1 cut(s) 389
AlwI GGATC 3 cut(s) 309, 322, 467
AoxI GGCC 2 cut(s) 295, 346
ApeKI GCWGC 1 cut(s) 363
AseI ATTAAT 1 cut(s) 96
Asp700I GAANNNNTTC 1 cut(s) 446
AspLEI GCGC 1 cut(s) 223
AspS9I GGNCC 2 cut(s) 254, 424
AsuC2I CCSGG 2 cut(s) 308, 323
AsuHPI GGTGA 1 cut(s) 103
AsuII TTCGAA 1 cut(s) 285
AvaII GGWCC 2 cut(s) 254, 424
BalI TGGCCA 1 cut(s) 297
BamHI GGATCC 1 cut(s) 314
BanI GGYRCC 1 cut(s) 161
BanII GRGCYC 1 cut(s) 470
BarI GAAGNNNNNNTAC 2 cut(s) 360, 392
BbsI GAAGAC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 470
BbvI GCAGC 1 cut(s) 375
BccI CCATC 2 cut(s) 18, 450
BceAI ACGGC 1 cut(s) 149
BcnI CCSGG 2 cut(s) 308, 323
BcoDI GTCTC 1 cut(s) 389
BcuI ACTAGT 1 cut(s) 173
BfaI CTAG 1 cut(s) 174
BisI GCNGC 1 cut(s) 364
BlsI GCNGC 1 cut(s) 365
Bme1390I CCNGG 2 cut(s) 308, 323
Bme18I GGWCC 2 cut(s) 254, 424
BmgT120I GGNCC 2 cut(s) 254, 424
BmiI GGNNCC 2 cut(s) 163, 316
BmrFI CCNGG 2 cut(s) 308, 323
BmsI GCATC 1 cut(s) 21
BpiI GAAGAC 1 cut(s) 237
Bpu14I TTCGAA 1 cut(s) 285
BpuMI CCSGG 2 cut(s) 308, 323
Bsa29I ATCGAT 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 157
BsaWI WCCGGW 1 cut(s) 379
Bsc4I CCNNNNNNNGG 1 cut(s) 158
BseCI ATCGAT 1 cut(s) 185
BseDI CCNNGG 1 cut(s) 157
BseLI CCNNNNNNNGG 1 cut(s) 158
BseMII CTCAG 2 cut(s) 99, 405
BseXI GCAGC 1 cut(s) 375
BshFI GGCC 2 cut(s) 297, 348
BshNI GGYRCC 1 cut(s) 161
BshVI ATCGAT 1 cut(s) 185
BsiHKAI GWGCWC 1 cut(s) 470
BsiSI CCGG 5 cut(s) 307, 322, 380, 413, 451
BslI CCNNNNNNNGG 1 cut(s) 158
BsmAI GTCTC 1 cut(s) 389
BsmBI CGTCTC 1 cut(s) 389
BsnI GGCC 2 cut(s) 297, 348
Bsp119I TTCGAA 1 cut(s) 285
Bsp1286I GDGCHC 1 cut(s) 470
Bsp143I GATC 6 cut(s) 145, 182, 186, 314, 352, 472
BspANI GGCC 2 cut(s) 297, 348
BspCNI CTCAG 2 cut(s) 100, 404
BspDI ATCGAT 1 cut(s) 185
BspHI TCATGA 1 cut(s) 438
BspLI GGNNCC 2 cut(s) 163, 316
BspPI GGATC 3 cut(s) 309, 322, 467
BspQI GCTCTTC 1 cut(s) 437
BspT104I TTCGAA 1 cut(s) 285
BspT107I GGYRCC 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 6 cut(s) 145, 182, 186, 314, 352, 472
BssNAI GTATAC 1 cut(s) 377
BssT1I CCWWGG 1 cut(s) 157
Bst1107I GTATAC 1 cut(s) 377
Bst4CI ACNGT 1 cut(s) 218
Bst6I CTCTTC 1 cut(s) 437
BstBI TTCGAA 1 cut(s) 285
BstDEI CTNAG 2 cut(s) 108, 391
BstHHI GCGC 1 cut(s) 223
BstKTI GATC 6 cut(s) 148, 185, 189, 317, 355, 475
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 6 cut(s) 145, 182, 186, 314, 352, 472
BstSCI CCNGG 2 cut(s) 306, 321
BstV1I GCAGC 1 cut(s) 375
BstV2I GAAGAC 1 cut(s) 237
BstX2I RGATCY 1 cut(s) 314
BstYI RGATCY 1 cut(s) 314
BstZ17I GTATAC 1 cut(s) 377
Bsu15I ATCGAT 1 cut(s) 185
BsuRI GGCC 2 cut(s) 297, 348
BsuTUI ATCGAT 1 cut(s) 185
BtgZI GCGATG 1 cut(s) 469
CciI TCATGA 1 cut(s) 438
CfoI GCGC 1 cut(s) 223
Cfr13I GGNCC 2 cut(s) 254, 424
ClaI ATCGAT 1 cut(s) 185
CseI GACGC 1 cut(s) 257
CviAII CATG 3 cut(s) 350, 439, 477
CviJI RGCY 7 cut(s) 67, 124, 269, 297, 348, 447, 468
CviKI_1 RGCY 7 cut(s) 67, 124, 269, 297, 348, 447, 468
DdeI CTNAG 2 cut(s) 108, 391
DpnI GATC 6 cut(s) 147, 184, 188, 316, 354, 474
DpnII GATC 6 cut(s) 145, 182, 186, 314, 352, 472
EaeI YGGCCR 1 cut(s) 295
Eam1104I CTCTTC 1 cut(s) 437
EarI CTCTTC 1 cut(s) 437
Ecl136II GAGCTC 1 cut(s) 468
Eco130I CCWWGG 1 cut(s) 157
Eco24I GRGCYC 1 cut(s) 470
Eco47I GGWCC 2 cut(s) 254, 424
Eco53kI GAGCTC 1 cut(s) 468
EcoICRI GAGCTC 1 cut(s) 468
EcoO109I RGGNCCY 1 cut(s) 424
EcoT14I CCWWGG 1 cut(s) 157
EcoT38I GRGCYC 1 cut(s) 470
ErhI CCWWGG 1 cut(s) 157
Esp3I CGTCTC 1 cut(s) 389
FaeI CATG 3 cut(s) 353, 442, 480
FaiI YATR 9 cut(s) 6, 80, 132, 134, 303, 351, 377, 440, 478
FatI CATG 3 cut(s) 349, 438, 476
FblI GTMKAC 1 cut(s) 376
Fnu4HI GCNGC 1 cut(s) 364
FriOI GRGCYC 1 cut(s) 470
Fsp4HI GCNGC 1 cut(s) 364
FspBI CTAG 1 cut(s) 174
GlaI GCGC 1 cut(s) 222
GluI GCNGC 1 cut(s) 364
HaeIII GGCC 2 cut(s) 297, 348
HapII CCGG 5 cut(s) 307, 322, 380, 413, 451
HgaI GACGC 1 cut(s) 257
HhaI GCGC 1 cut(s) 223
Hin1II CATG 3 cut(s) 353, 442, 480
Hin6I GCGC 1 cut(s) 221
HinP1I GCGC 1 cut(s) 221
HinfI GANTC 4 cut(s) 104, 389, 403, 431
HpaII CCGG 5 cut(s) 307, 322, 380, 413, 451
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 1 cut(s) 377
Hpy188I TCNGA 5 cut(s) 103, 109, 314, 394, 472
Hpy188III TCNNGA 3 cut(s) 260, 422, 439
Hpy8I GTNNAC 1 cut(s) 377
Hpy99I CGWCG 3 cut(s) 230, 363, 403
HpyAV CCTTC 3 cut(s) 281, 328, 362
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4V TGCA 2 cut(s) 180, 329
HpyF3I CTNAG 2 cut(s) 108, 391
Hsp92II CATG 3 cut(s) 353, 442, 480
HspAI GCGC 1 cut(s) 221
Kzo9I GATC 6 cut(s) 145, 182, 186, 314, 352, 472
LguI GCTCTTC 1 cut(s) 437
Lsp1109I GCAGC 1 cut(s) 375
LweI GCATC 1 cut(s) 21
MaeI CTAG 1 cut(s) 174
MaeIII GTNAC 2 cut(s) 212, 386
MalI GATC 6 cut(s) 147, 184, 188, 316, 354, 474
MboI GATC 6 cut(s) 145, 182, 186, 314, 352, 472
MboII GAAGA 7 cut(s) 33, 140, 149, 181, 242, 347, 454
MflI RGATCY 1 cut(s) 314
MhlI GDGCHC 1 cut(s) 470
MlsI TGGCCA 1 cut(s) 297
MluCI AATT 2 cut(s) 97, 417
MluNI TGGCCA 1 cut(s) 297
MlyI GAGTC 2 cut(s) 383, 425
MmeI TCCRAC 1 cut(s) 292
MnlI CCTC 6 cut(s) 103, 162, 267, 272, 437, 453
Mox20I TGGCCA 1 cut(s) 297
MroXI GAANNNNTTC 1 cut(s) 446
MscI TGGCCA 1 cut(s) 297
MseI TTAA 1 cut(s) 96
Msp20I TGGCCA 1 cut(s) 297
MspI CCGG 5 cut(s) 307, 322, 380, 413, 451
MspR9I CCNGG 2 cut(s) 308, 323
NciI CCSGG 2 cut(s) 308, 323
NdeII GATC 6 cut(s) 145, 182, 186, 314, 352, 472
NlaIII CATG 3 cut(s) 353, 442, 480
NlaIV GGNNCC 2 cut(s) 163, 316
NmuCI GTSAC 1 cut(s) 386
NspV TTCGAA 1 cut(s) 285
PagI TCATGA 1 cut(s) 438
PciSI GCTCTTC 1 cut(s) 437
PdmI GAANNNNTTC 1 cut(s) 446
PfeI GAWTC 2 cut(s) 104, 403
PflFI GACNNNGTC 1 cut(s) 308
PkrI GCNGC 1 cut(s) 365
PleI GAGTC 2 cut(s) 383, 425
PpsI GAGTC 2 cut(s) 383, 425
PpuMI RGGWCCY 1 cut(s) 424
PshBI ATTAAT 1 cut(s) 96
Psp124BI GAGCTC 1 cut(s) 470
Psp5II RGGWCCY 1 cut(s) 424
PspN4I GGNNCC 2 cut(s) 163, 316
PspPI GGNCC 2 cut(s) 254, 424
PspPPI RGGWCCY 1 cut(s) 424
PsuI RGATCY 1 cut(s) 314
PsyI GACNNNGTC 1 cut(s) 308
SacI GAGCTC 1 cut(s) 470
SapI GCTCTTC 1 cut(s) 437
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 1 cut(s) 364
Sau3AI GATC 6 cut(s) 145, 182, 186, 314, 352, 472
Sau96I GGNCC 2 cut(s) 254, 424
SchI GAGTC 2 cut(s) 383, 425
ScrFI CCNGG 2 cut(s) 308, 323
SduI GDGCHC 1 cut(s) 470
SetI ASST 7 cut(s) 114, 259, 283, 373, 429, 449, 470
SfaNI GCATC 1 cut(s) 21
SfuI TTCGAA 1 cut(s) 285
SinI GGWCC 2 cut(s) 254, 424
SpeI ACTAGT 1 cut(s) 173
Sse9I AATT 2 cut(s) 97, 417
SspI AATATT 1 cut(s) 44
SspMI CTAG 1 cut(s) 174
SstI GAGCTC 1 cut(s) 470
StyD4I CCNGG 2 cut(s) 306, 321
StyI CCWWGG 1 cut(s) 157
TaaI ACNGT 1 cut(s) 218
TaqI TCGA 3 cut(s) 185, 285, 429
TasI AATT 2 cut(s) 97, 417
TfiI GAWTC 2 cut(s) 104, 403
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TseFI GTSAC 1 cut(s) 386
TseI GCWGC 1 cut(s) 363
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 4 cut(s) 67, 252, 427, 455
Tth111I GACNNNGTC 1 cut(s) 308
VpaK11BI GGWCC 2 cut(s) 254, 424
VspI ATTAAT 1 cut(s) 96
XcmI CCANNNNNNNNNTGG 1 cut(s) 67
XmiI GTMKAC 1 cut(s) 376
XmnI GAANNNNTTC 1 cut(s) 446
XspI CTAG 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.