Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0015766

Physical Location & Seq

Genomic Coordinates Reverse (-)

18083854 .. 18095503

Gene Structure 11650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG199700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGATTCTCTTAAGACCAAGGGTTTCTGCACCATTGGAGCAACCCATCCTCTCAGAAAGCCTGTTTCCTTTATGCATGCAAATACTTGCTCTGAAAGTATGGGAGTTCCAATTTTCTTGGAGCTCTGCAACCCTTCGTGTTCCAGTGATGCATGAGCTTCCAATGAGTCAGGAGGTTCTTTCCCCACCGTTGGATGCCACTTCCAACCCACCTCTTCTCTTTGATGGCACTACCAGGTTGTATACCTATTACTCAATGGCTTCCTGCGAAGTGGGAGGTATCGAAGGCGTTGGCCAATATGACCGGTTCGGATCCTTCCGGGTTGCACTTGATGACCAGCAAGGCCATGATCTTCGTCGCAGCGAAGGTGGTATACCTGATTGTGACTCAGAGACGACGATTCGTTTTCCGGCAATTCAGGACCTTGACTCATTCATGAAGAGCTTCCGGCGATGGAGGACGAGCTCTGATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0010731 GO:0016740 GO:0016765 GO:0019538 GO:0034641 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C_2 GST_N_3

Protein Analysis

158

Amino Acids

17.89

Weight (kDa)

4.85

Isoelectric Point (pI)

74.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015766)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000002651 RLG00000011850 RLG00000019599 RLG00000023081 RLG00000029014 RLG00000029351
rosa_multiflora	Rmu_sc0001942.1_g000046
rosa_rugosa	Rorug05G0246800
rosa_samantha	Rh2AG212200 Rh5CG359900 Rh5DG159600 Rh5DG404900 Rh6AG221600 Rh6DG218800 Rh6DG450200 Rh7AG199700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	242, 373
AclWI	GGATC	3 cut(s)	306, 319, 464
AcoI	YGGCCR	1 cut(s)	292
AfiI	CCNNNNNNNGG	1 cut(s)	190
AflII	CTTAAG	1 cut(s)	10
AgeI	ACCGGT	1 cut(s)	303
AjnI	CCWGG	1 cut(s)	233
AluBI	AGCT	4 cut(s)	123, 157, 444, 465
AluI	AGCT	4 cut(s)	123, 157, 444, 465
Alw21I	GWGCWC	2 cut(s)	125, 467
Alw26I	GTCTC	1 cut(s)	386
AlwI	GGATC	3 cut(s)	306, 319, 464
AoxI	GGCC	2 cut(s)	292, 343
ApeKI	GCWGC	1 cut(s)	360
AsiGI	ACCGGT	1 cut(s)	303
Asp700I	GAANNNNTTC	1 cut(s)	443
AspS9I	GGNCC	1 cut(s)	421
AsuC2I	CCSGG	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	421
BalI	TGGCCA	1 cut(s)	294
BamHI	GGATCC	1 cut(s)	311
BanII	GRGCYC	2 cut(s)	125, 467
BarI	GAAGNNNNNNTAC	2 cut(s)	357, 389
Bbv12I	GWGCWC	2 cut(s)	125, 467
BbvI	GCAGC	1 cut(s)	372
BccI	CCATC	3 cut(s)	53, 218, 447
BciT130I	CCWGG	1 cut(s)	235
BcnI	CCSGG	1 cut(s)	320
BcoDI	GTCTC	1 cut(s)	386
BfrI	CTTAAG	1 cut(s)	10
BisI	GCNGC	1 cut(s)	361
BlsI	GCNGC	1 cut(s)	362
Bme1390I	CCNGG	2 cut(s)	235, 320
Bme18I	GGWCC	1 cut(s)	421
BmgT120I	GGNCC	1 cut(s)	421
BmiI	GGNNCC	1 cut(s)	313
BmrFI	CCNGG	2 cut(s)	235, 320
BmsI	GCATC	2 cut(s)	138, 184
BpuMI	CCSGG	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	17
BsaWI	WCCGGW	1 cut(s)	303
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse118I	RCCGGY	1 cut(s)	303
Bse1I	ACTGG	1 cut(s)	143
BseBI	CCWGG	1 cut(s)	235
BseDI	CCNNGG	1 cut(s)	17
BseGI	GGATG	2 cut(s)	45, 199
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMII	CTCAG	2 cut(s)	66, 402
BseNI	ACTGG	1 cut(s)	143
BseXI	GCAGC	1 cut(s)	372
BsgI	GTGCAG	1 cut(s)	12
BshFI	GGCC	2 cut(s)	294, 345
BshTI	ACCGGT	1 cut(s)	303
BsiHKAI	GWGCWC	2 cut(s)	125, 467
BsiSI	CCGG	4 cut(s)	304, 319, 410, 448
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	1 cut(s)	386
BsmBI	CGTCTC	1 cut(s)	386
BsnI	GGCC	2 cut(s)	294, 345
Bsp1286I	GDGCHC	2 cut(s)	125, 467
Bsp143I	GATC	3 cut(s)	311, 349, 469
BspANI	GGCC	2 cut(s)	294, 345
BspCNI	CTCAG	2 cut(s)	65, 401
BspHI	TCATGA	1 cut(s)	435
BspLI	GGNNCC	1 cut(s)	313
BspPI	GGATC	3 cut(s)	306, 319, 464
BspQI	GCTCTTC	1 cut(s)	434
BspTI	CTTAAG	1 cut(s)	10
BsrFI	RCCGGY	1 cut(s)	303
BsrI	ACTGG	1 cut(s)	143
BssAI	RCCGGY	1 cut(s)	303
BssECI	CCNNGG	1 cut(s)	17
BssMI	GATC	3 cut(s)	311, 349, 469
BssNAI	GTATAC	2 cut(s)	243, 374
BssT1I	CCWWGG	1 cut(s)	17
Bst1107I	GTATAC	2 cut(s)	243, 374
Bst2UI	CCWGG	1 cut(s)	235
Bst4CI	ACNGT	1 cut(s)	189
Bst6I	CTCTTC	2 cut(s)	219, 434
BstAFI	CTTAAG	1 cut(s)	10
BstC8I	GCNNGC	1 cut(s)	77
BstDEI	CTNAG	2 cut(s)	52, 388
BstF5I	GGATG	2 cut(s)	45, 199
BstKTI	GATC	3 cut(s)	314, 352, 472
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	3 cut(s)	311, 349, 469
BstNI	CCWGG	1 cut(s)	235
BstNSI	RCATGY	1 cut(s)	79
BstSCI	CCNGG	2 cut(s)	233, 318
BstV1I	GCAGC	1 cut(s)	372
BstX2I	RGATCY	1 cut(s)	311
BstYI	RGATCY	1 cut(s)	311
BstZ17I	GTATAC	2 cut(s)	243, 374
BsuRI	GGCC	2 cut(s)	294, 345
BtgZI	GCGATG	1 cut(s)	466
BtsCI	GGATG	2 cut(s)	45, 199
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	77
CciI	TCATGA	1 cut(s)	435
Cfr10I	RCCGGY	1 cut(s)	303
Cfr13I	GGNCC	1 cut(s)	421
CsiI	ACCWGGT	1 cut(s)	233
CspAI	ACCGGT	1 cut(s)	303
CviAII	CATG	5 cut(s)	76, 152, 347, 436, 474
CviJI	RGCY	8 cut(s)	60, 123, 157, 260, 294, 345, 444, 465
CviKI_1	RGCY	8 cut(s)	60, 123, 157, 260, 294, 345, 444, 465
DdeI	CTNAG	2 cut(s)	52, 388
DpnI	GATC	3 cut(s)	313, 351, 471
DpnII	GATC	3 cut(s)	311, 349, 469
EaeI	YGGCCR	1 cut(s)	292
Eam1104I	CTCTTC	2 cut(s)	219, 434
EarI	CTCTTC	2 cut(s)	219, 434
Ecl136II	GAGCTC	2 cut(s)	123, 465
Eco130I	CCWWGG	1 cut(s)	17
Eco24I	GRGCYC	2 cut(s)	125, 467
Eco47I	GGWCC	1 cut(s)	421
Eco53kI	GAGCTC	2 cut(s)	123, 465
EcoICRI	GAGCTC	2 cut(s)	123, 465
EcoO109I	RGGNCCY	1 cut(s)	421
EcoRII	CCWGG	1 cut(s)	233
EcoT14I	CCWWGG	1 cut(s)	17
EcoT22I	ATGCAT	2 cut(s)	77, 153
EcoT38I	GRGCYC	2 cut(s)	125, 467
ErhI	CCWWGG	1 cut(s)	17
Esp3I	CGTCTC	1 cut(s)	386
FaeI	CATG	5 cut(s)	79, 155, 350, 439, 477
FatI	CATG	5 cut(s)	75, 151, 346, 435, 473
FblI	GTMKAC	2 cut(s)	242, 373
Fnu4HI	GCNGC	1 cut(s)	361
FokI	GGATG	2 cut(s)	32, 206
FriOI	GRGCYC	2 cut(s)	125, 467
Fsp4HI	GCNGC	1 cut(s)	361
GluI	GCNGC	1 cut(s)	361
HaeIII	GGCC	2 cut(s)	294, 345
HapII	CCGG	4 cut(s)	304, 319, 410, 448
Hin1II	CATG	5 cut(s)	79, 155, 350, 439, 477
HinfI	GANTC	5 cut(s)	4, 166, 386, 400, 428
HpaII	CCGG	4 cut(s)	304, 319, 410, 448
Hpy166II	GTNNAC	2 cut(s)	243, 374
Hpy188I	TCNGA	5 cut(s)	55, 93, 311, 391, 469
Hpy188III	TCNNGA	3 cut(s)	170, 419, 436
Hpy8I	GTNNAC	2 cut(s)	243, 374
Hpy99I	CGWCG	2 cut(s)	360, 400
HpyAV	CCTTC	4 cut(s)	143, 278, 325, 359
HpyCH4III	ACNGT	1 cut(s)	189
HpyCH4V	TGCA	6 cut(s)	29, 75, 79, 128, 151, 326
HpyF3I	CTNAG	2 cut(s)	52, 388
Hsp92II	CATG	5 cut(s)	79, 155, 350, 439, 477
Kzo9I	GATC	3 cut(s)	311, 349, 469
LguI	GCTCTTC	1 cut(s)	434
LmnI	GCTCC	2 cut(s)	37, 120
Lsp1109I	GCAGC	1 cut(s)	372
LweI	GCATC	2 cut(s)	138, 184
MabI	ACCWGGT	1 cut(s)	233
MaeIII	GTNAC	1 cut(s)	383
MalI	GATC	3 cut(s)	313, 351, 471
MboI	GATC	3 cut(s)	311, 349, 469
MboII	GAAGA	3 cut(s)	206, 344, 451
MflI	RGATCY	1 cut(s)	311
MhlI	GDGCHC	2 cut(s)	125, 467
MlsI	TGGCCA	1 cut(s)	294
MluCI	AATT	2 cut(s)	110, 414
MluNI	TGGCCA	1 cut(s)	294
MlyI	GAGTC	3 cut(s)	175, 380, 422
MmeI	TCCRAC	2 cut(s)	171, 228
MnlI	CCTC	5 cut(s)	59, 166, 222, 269, 450
Mox20I	TGGCCA	1 cut(s)	294
Mph1103I	ATGCAT	2 cut(s)	77, 153
MroXI	GAANNNNTTC	1 cut(s)	443
MscI	TGGCCA	1 cut(s)	294
MseI	TTAA	1 cut(s)	11
Msp20I	TGGCCA	1 cut(s)	294
MspCI	CTTAAG	1 cut(s)	10
MspI	CCGG	4 cut(s)	304, 319, 410, 448
MspR9I	CCNGG	2 cut(s)	235, 320
MvaI	CCWGG	1 cut(s)	235
NciI	CCSGG	1 cut(s)	320
NdeII	GATC	3 cut(s)	311, 349, 469
NlaIII	CATG	5 cut(s)	79, 155, 350, 439, 477
NlaIV	GGNNCC	1 cut(s)	313
NmuCI	GTSAC	1 cut(s)	383
NsiI	ATGCAT	2 cut(s)	77, 153
NspI	RCATGY	1 cut(s)	79
PaeI	GCATGC	1 cut(s)	79
PagI	TCATGA	1 cut(s)	435
PciSI	GCTCTTC	1 cut(s)	434
PdmI	GAANNNNTTC	1 cut(s)	443
PfeI	GAWTC	2 cut(s)	4, 400
PinAI	ACCGGT	1 cut(s)	303
PkrI	GCNGC	1 cut(s)	362
PleI	GAGTC	3 cut(s)	174, 380, 422
PpsI	GAGTC	3 cut(s)	174, 380, 422
PpuMI	RGGWCCY	1 cut(s)	421
Psp124BI	GAGCTC	2 cut(s)	125, 467
Psp5II	RGGWCCY	1 cut(s)	421
Psp6I	CCWGG	1 cut(s)	233
PspGI	CCWGG	1 cut(s)	233
PspN4I	GGNNCC	1 cut(s)	313
PspPI	GGNCC	1 cut(s)	421
PspPPI	RGGWCCY	1 cut(s)	421
PsuI	RGATCY	1 cut(s)	311
SacI	GAGCTC	2 cut(s)	125, 467
SapI	GCTCTTC	1 cut(s)	434
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	1 cut(s)	361
Sau3AI	GATC	3 cut(s)	311, 349, 469
Sau96I	GGNCC	1 cut(s)	421
SchI	GAGTC	3 cut(s)	175, 380, 422
ScrFI	CCNGG	2 cut(s)	235, 320
SduI	GDGCHC	2 cut(s)	125, 467
SexAI	ACCWGGT	1 cut(s)	233
SfaNI	GCATC	2 cut(s)	138, 184
SinI	GGWCC	1 cut(s)	421
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
SphI	GCATGC	1 cut(s)	79
Sse9I	AATT	2 cut(s)	110, 414
SstI	GAGCTC	2 cut(s)	125, 467
StyD4I	CCNGG	2 cut(s)	233, 318
StyI	CCWWGG	1 cut(s)	17
TaaI	ACNGT	1 cut(s)	189
TaqI	TCGA	1 cut(s)	282
TasI	AATT	2 cut(s)	110, 414
TfiI	GAWTC	2 cut(s)	4, 400
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TscAI	CASTG	1 cut(s)	150
TseFI	GTSAC	1 cut(s)	383
TseI	GCWGC	1 cut(s)	360
Tsp45I	GTSAC	1 cut(s)	383
TspDTI	ATGAA	2 cut(s)	424, 452
TspRI	CASTG	1 cut(s)	150
Vha464I	CTTAAG	1 cut(s)	10
VpaK11BI	GGWCC	1 cut(s)	421
XceI	RCATGY	1 cut(s)	79
XmiI	GTMKAC	2 cut(s)	242, 373
XmnI	GAANNNNTTC	1 cut(s)	443
Zsp2I	ATGCAT	2 cut(s)	77, 153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.