RLG00000023081

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0015766
Physical Location & Seq
Forward (+)
17814601 .. 17815760
1160 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023081

Sequence Viewer

Length: 306 bp
ATGGCACTGCATGGCGGTCTTGAACGGCGAGACCAGTGGCAATTAGGAGGCGAGGGTGGTGGCGACGTCATCCCAGTTGGTGGCTTTGAGATTGGTGCGGTCGAGAGAGGACCACTTGTCCTTGAAGATGGAGATGAGGGCTTCGGCCTCGTTGTTGGTCCAGCACGGTGGTGGGGGGTTGAGGAGGACATTGGGGTGTGGGATAAGGAGAGAAGGGAGGGCATAGATGCTGACAATTTCACTCAAAATATCAACAAGCAAATTGGAGAAAGCTGGGAACCGGTGGTATTACATGTCCAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.06

Weight (kDa)

4.3

Isoelectric Point (pI)

49.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 69
AccB7I CCANNNNNTGG 1 cut(s) 80
AciI CCGC 2 cut(s) 15, 98
AcyI GRCGYC 1 cut(s) 66
AfiI CCNNNNNNNGG 1 cut(s) 80
AflIII ACRYGT 1 cut(s) 292
AgeI ACCGGT 1 cut(s) 280
AgsI TTSAA 2 cut(s) 23, 125
AhdI GACNNNNNGTC 1 cut(s) 116
AleI CACNNNNGTG 1 cut(s) 169
AluBI AGCT 1 cut(s) 273
AluI AGCT 1 cut(s) 273
Alw26I GTCTC 1 cut(s) 24
AoxI GGCC 1 cut(s) 145
AsiGI ACCGGT 1 cut(s) 280
AspS9I GGNCC 2 cut(s) 110, 158
AvaII GGWCC 2 cut(s) 110, 158
BccI CCATC 1 cut(s) 122
BceAI ACGGC 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 24
Bme18I GGWCC 2 cut(s) 110, 158
BmeRI GACNNNNNGTC 1 cut(s) 116
BmgT120I GGNCC 2 cut(s) 110, 158
BmiI GGNNCC 1 cut(s) 279
BmrI ACTGGG 1 cut(s) 68
BmsI GCATC 1 cut(s) 217
BmuI ACTGGG 1 cut(s) 68
BsaHI GRCGYC 1 cut(s) 66
BsaI GGTCTC 1 cut(s) 24
BsaWI WCCGGW 1 cut(s) 280
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse118I RCCGGY 1 cut(s) 280
Bse1I ACTGG 2 cut(s) 34, 74
BseGI GGATG 1 cut(s) 69
BseLI CCNNNNNNNGG 1 cut(s) 80
BseNI ACTGG 2 cut(s) 34, 74
BseRI GAGGAG 1 cut(s) 197
BseYI CCCAGC 1 cut(s) 273
Bsh1285I CGRYCG 1 cut(s) 102
BshFI GGCC 1 cut(s) 147
BshTI ACCGGT 1 cut(s) 280
BsiEI CGRYCG 1 cut(s) 102
BsiSI CCGG 1 cut(s) 281
BslI CCNNNNNNNGG 1 cut(s) 80
BsmAI GTCTC 1 cut(s) 24
BsnI GGCC 1 cut(s) 147
Bso31I GGTCTC 1 cut(s) 24
BspACI CCGC 2 cut(s) 15, 98
BspANI GGCC 1 cut(s) 147
BspLI GGNNCC 1 cut(s) 279
BspTNI GGTCTC 1 cut(s) 24
BsrFI RCCGGY 1 cut(s) 280
BsrI ACTGG 2 cut(s) 34, 74
BssAI RCCGGY 1 cut(s) 280
BssNI GRCGYC 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 168
BstACI GRCGYC 1 cut(s) 66
BstF5I GGATG 1 cut(s) 69
BstMAI GTCTC 1 cut(s) 24
BstMCI CGRYCG 1 cut(s) 102
BstNSI RCATGY 1 cut(s) 296
BstXI CCANNNNNNTGG 1 cut(s) 168
BsuRI GGCC 1 cut(s) 147
BtsCI GGATG 1 cut(s) 69
BtsI GCAGTG 1 cut(s) 5
BtsIMutI CAGTG 2 cut(s) 5, 41
Cfr10I RCCGGY 1 cut(s) 280
Cfr13I GGNCC 2 cut(s) 110, 158
CspAI ACCGGT 1 cut(s) 280
CviAII CATG 2 cut(s) 11, 293
CviJI RGCY 4 cut(s) 84, 141, 147, 273
CviKI_1 RGCY 4 cut(s) 84, 141, 147, 273
DriI GACNNNNNGTC 1 cut(s) 116
Eam1105I GACNNNNNGTC 1 cut(s) 116
Eco31I GGTCTC 1 cut(s) 24
Eco47I GGWCC 2 cut(s) 110, 158
FaeI CATG 2 cut(s) 14, 296
FaiI YATR 3 cut(s) 12, 224, 294
FatI CATG 2 cut(s) 10, 292
FokI GGATG 1 cut(s) 56
GsaI CCCAGC 1 cut(s) 277
HaeIII GGCC 1 cut(s) 147
HapII CCGG 1 cut(s) 281
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 2 cut(s) 14, 296
HpaII CCGG 1 cut(s) 281
Hpy188III TCNNGA 2 cut(s) 20, 103
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 1 cut(s) 207
HpyCH4III ACNGT 1 cut(s) 168
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 1 cut(s) 10
HpySE526I ACGT 1 cut(s) 66
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 2 cut(s) 14, 296
LpnPI CCDG 5 cut(s) 47, 87, 174, 259, 294
LweI GCATC 1 cut(s) 217
MaeII ACGT 1 cut(s) 66
MboII GAAGA 1 cut(s) 137
MluCI AATT 4 cut(s) 41, 235, 261, 301
MnlI CCTC 8 cut(s) 41, 46, 101, 130, 158, 175, 178, 211
MseI TTAA 1 cut(s) 304
MslI CAYNNNNRTG 2 cut(s) 169, 194
MspI CCGG 1 cut(s) 281
NlaIII CATG 2 cut(s) 14, 296
NlaIV GGNNCC 1 cut(s) 279
NspI RCATGY 1 cut(s) 296
OliI CACNNNNGTG 1 cut(s) 169
PciI ACATGT 1 cut(s) 292
PflMI CCANNNNNTGG 1 cut(s) 80
PinAI ACCGGT 1 cut(s) 280
PscI ACATGT 1 cut(s) 292
PspFI CCCAGC 1 cut(s) 273
PspN4I GGNNCC 1 cut(s) 279
PspPI GGNCC 2 cut(s) 110, 158
RseI CAYNNNNRTG 2 cut(s) 169, 194
SaqAI TTAA 1 cut(s) 304
Sau96I GGNCC 2 cut(s) 110, 158
SetI ASST 2 cut(s) 69, 275
SfaNI GCATC 1 cut(s) 217
SinI GGWCC 2 cut(s) 110, 158
SmiMI CAYNNNNRTG 2 cut(s) 169, 194
Sse9I AATT 4 cut(s) 41, 235, 261, 301
SsiI CCGC 2 cut(s) 15, 98
TaaI ACNGT 1 cut(s) 168
TaiI ACGT 1 cut(s) 69
TaqI TCGA 1 cut(s) 102
TasI AATT 4 cut(s) 41, 235, 261, 301
Tru1I TTAA 1 cut(s) 304
Tru9I TTAA 1 cut(s) 304
TscAI CASTG 2 cut(s) 12, 41
TspRI CASTG 2 cut(s) 12, 41
Van91I CCANNNNNTGG 1 cut(s) 80
VpaK11BI GGWCC 2 cut(s) 110, 158
XceI RCATGY 1 cut(s) 296
XcmI CCANNNNNNNNNTGG 1 cut(s) 168
ZraI GACGTC 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.