Rmu_sc0001942.1_g000046

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001942.1
OG0015766
Physical Location & Seq
Reverse (-)
191718 .. 197097
5380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001942.1_g000046.1.cds

Sequence Viewer

Length: 1293 bp
atggaggtaatcttcttctccgatctcgtcccaaagatgttcttgttcaaccttcgaacccatctccacttctcttcggagcttatcgatcttgttgtggcactgcatggtggtcaatgggaattgggcggcgagggtggtggcgacgtcatcctagttggtggctttgagattggtgtggtcaagagaggaccacttgtccttgaagatggagatgagggcttcagcctcattgtccgtctagcacggttgcgaggggttgaggaggacattggagtgtgggataaggagagaagggagggcatgagagttgtgatggtggtggtgggtggcgttcgcatcctcgaagatttggagttggagagagaactgagtttgtttttggacgaggaagacagagataaccagaggaggagagagagctggaaggagaaaagccttcaaatttcagataccaccgccgcccaccttgaagatccaaattccaggaagccagaaccggcggtgccaccttcagaacctgtcggaaaatactcgaaccggccctcggaaataaagaaatcctctctgcccggttcgaagacttcctcaccacctcctgcagccatactccaccacctattctctctctgccctgtccctgtaagcccagcccagaaggatcgacgaggcccagaagcgcagcgaagcccagaggcacaacgcagcccagaagcccagaaacgtggcccactgatgttacccacctcaggggccacatcagcactaccacgtcagcgtccagtcagtaccattgtccgcatcagcagccacgtcagcaccggtcaacgtcggttgaccgtctctggtcaactttccggccactatttcggccaccgacagcgacttttccggatgagtaacctgaacaagttgaacttcgttccactagagacaactggcgcaggataccataggtgggtccgagatgtgcgccaacatcttaaggctgatggacttctgggagccatccaagagcctagtcagaacgtgctctccattaagcaagctactgcttttgaagcaaaacaagctaaagccataattctcatgacaaggcacatgaatgacgcgctccaaaatgaatacctcaatgaggaagacccaagaaagctatgggtagaacttgagcagcgatttggcaacgttcgtgacttcctgcttcctgatttagaagtgcgatggcatagcctccgcttttgtgatttcaagttgttggggtggatttgtacagaggctgctaggattgcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

430

Amino Acids

48.42

Weight (kDa)

7.82

Isoelectric Point (pI)

58.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 150
AccB1I GGYRCC 1 cut(s) 505
AccII CGCG 1 cut(s) 1112
AccIII TCCGGA 1 cut(s) 891
AciI CCGC 6 cut(s) 129, 459, 462, 503, 799, 1234
AclI AACGTT 1 cut(s) 1185
AclWI GGATC 2 cut(s) 470, 669
AcoI YGGCCR 2 cut(s) 859, 871
AcsI RAATTY 2 cut(s) 444, 481
AcuI CTGAAG 2 cut(s) 208, 498
AcyI GRCGYC 1 cut(s) 147
AfaI GTAC 2 cut(s) 790, 1270
AfiI CCNNNNNNNGG 5 cut(s) 547, 749, 750, 958, 1135
AflII CTTAAG 1 cut(s) 983
AgeI ACCGGT 1 cut(s) 821
AgsI TTSAA 7 cut(s) 49, 206, 443, 473, 916, 1061, 1249
AhdI GACNNNNNGTC 1 cut(s) 197
AjiI CACGTC 2 cut(s) 773, 814
AjnI CCWGG 1 cut(s) 485
AloI GAACNNNNNNTCC 2 cut(s) 1019, 1051
AluBI AGCT 5 cut(s) 82, 423, 1049, 1073, 1153
AluI AGCT 5 cut(s) 82, 423, 1049, 1073, 1153
Alw21I GWGCWC 1 cut(s) 1035
Alw26I GTCTC 2 cut(s) 847, 926
AlwI GGATC 2 cut(s) 470, 669
AlwNI CAGNNNCTG 2 cut(s) 521, 1277
Aor13HI TCCGGA 1 cut(s) 891
AoxI GGCC 6 cut(s) 542, 670, 727, 753, 859, 871
ApeKI GCWGC 6 cut(s) 602, 682, 705, 807, 1171, 1277
ApoI RAATTY 2 cut(s) 444, 481
AsiGI ACCGGT 1 cut(s) 821
AspLEI GCGC 4 cut(s) 682, 944, 975, 1114
AspS9I GGNCC 6 cut(s) 191, 543, 671, 728, 753, 961
AsuC2I CCSGG 1 cut(s) 573
AsuHPI GGTGA 1 cut(s) 582
AsuII TTCGAA 2 cut(s) 55, 578
AvaII GGWCC 2 cut(s) 191, 961
AxyI CCTNAGG 1 cut(s) 748
BanI GGYRCC 1 cut(s) 505
BbsI GAAGAC 3 cut(s) 399, 587, 1146
Bbv12I GWGCWC 1 cut(s) 1035
BbvI GCAGC 6 cut(s) 614, 694, 717, 819, 1183, 1264
BccI CCATC 6 cut(s) 69, 203, 310, 986, 1016, 1215
BciT130I CCWGG 1 cut(s) 487
BciVI GTATCC 1 cut(s) 941
BcnI CCSGG 1 cut(s) 573
BcoDI GTCTC 2 cut(s) 847, 926
BfaI CTAG 5 cut(s) 155, 242, 929, 1020, 1281
BfmI CTRYAG 1 cut(s) 600
BfrI CTTAAG 1 cut(s) 983
BfuI GTATCC 1 cut(s) 941
BisI GCNGC 8 cut(s) 130, 462, 603, 683, 706, 808, 1172, 1278
BlsI GCNGC 8 cut(s) 131, 463, 604, 684, 707, 809, 1173, 1279
Bme1390I CCNGG 2 cut(s) 487, 573
Bme18I GGWCC 2 cut(s) 191, 961
BmeRI GACNNNNNGTC 1 cut(s) 197
BmgBI CACGTC 2 cut(s) 773, 814
BmgT120I GGNCC 6 cut(s) 191, 543, 671, 728, 753, 961
BmiI GGNNCC 4 cut(s) 507, 754, 962, 1006
BmrFI CCNGG 2 cut(s) 487, 573
BmsI GCATC 2 cut(s) 348, 810
BpiI GAAGAC 3 cut(s) 399, 587, 1146
Bpu14I TTCGAA 2 cut(s) 55, 578
BpuEI CTTGAG 1 cut(s) 1187
BpuMI CCSGG 1 cut(s) 573
Bsa29I ATCGAT 1 cut(s) 87
BsaHI GRCGYC 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 546
BsaWI WCCGGW 2 cut(s) 821, 891
BsaXI ACNNNNNCTCC 2 cut(s) 1019, 1049
Bsc4I CCNNNNNNNGG 5 cut(s) 547, 749, 750, 958, 1135
Bse118I RCCGGY 3 cut(s) 499, 540, 821
Bse1I ACTGG 2 cut(s) 782, 943
Bse21I CCTNAGG 1 cut(s) 748
BseAI TCCGGA 1 cut(s) 891
BseBI CCWGG 1 cut(s) 487
BseCI ATCGAT 1 cut(s) 87
BseDI CCNNGG 1 cut(s) 546
BseGI GGATG 4 cut(s) 150, 339, 900, 1008
BseLI CCNNNNNNNGG 5 cut(s) 547, 749, 750, 958, 1135
BseMII CTCAG 2 cut(s) 362, 762
BseNI ACTGG 2 cut(s) 782, 943
BseRI GAGGAG 3 cut(s) 278, 424, 427
BseXI GCAGC 6 cut(s) 614, 694, 717, 819, 1183, 1264
BseYI CCCAGC 1 cut(s) 649
Bsh1236I CGCG 1 cut(s) 1112
BshFI GGCC 6 cut(s) 544, 672, 729, 755, 861, 873
BshNI GGYRCC 1 cut(s) 505
BshTI ACCGGT 1 cut(s) 821
BshVI ATCGAT 1 cut(s) 87
BsiHKAI GWGCWC 1 cut(s) 1035
BsiSI CCGG 6 cut(s) 500, 541, 573, 822, 858, 892
BslFI GGGAC 2 cut(s) 14, 623
BslI CCNNNNNNNGG 5 cut(s) 547, 749, 750, 958, 1135
BsmAI GTCTC 2 cut(s) 847, 926
BsmBI CGTCTC 1 cut(s) 847
BsmFI GGGAC 2 cut(s) 14, 623
BsnI GGCC 6 cut(s) 544, 672, 729, 755, 861, 873
Bsp119I TTCGAA 2 cut(s) 55, 578
Bsp1286I GDGCHC 1 cut(s) 1035
Bsp13I TCCGGA 1 cut(s) 891
Bsp1407I TGTACA 1 cut(s) 1268
Bsp143I GATC 4 cut(s) 22, 88, 475, 661
BspACI CCGC 6 cut(s) 129, 459, 462, 503, 799, 1234
BspANI GGCC 6 cut(s) 544, 672, 729, 755, 861, 873
BspCNI CTCAG 2 cut(s) 363, 761
BspDI ATCGAT 1 cut(s) 87
BspEI TCCGGA 1 cut(s) 891
BspFNI CGCG 1 cut(s) 1112
BspHI TCATGA 1 cut(s) 1089
BspLI GGNNCC 4 cut(s) 507, 754, 962, 1006
BspMAI CTGCAG 1 cut(s) 604
BspPI GGATC 2 cut(s) 470, 669
BspT104I TTCGAA 2 cut(s) 55, 578
BspT107I GGYRCC 1 cut(s) 505
BspTI CTTAAG 1 cut(s) 983
BsrFI RCCGGY 3 cut(s) 499, 540, 821
BsrGI TGTACA 1 cut(s) 1268
BsrI ACTGG 2 cut(s) 782, 943
BssAI RCCGGY 3 cut(s) 499, 540, 821
BssECI CCNNGG 1 cut(s) 546
BssMI GATC 4 cut(s) 22, 88, 475, 661
BssNI GRCGYC 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 487
Bst4CI ACNGT 2 cut(s) 249, 841
Bst6I CTCTTC 1 cut(s) 79
BstACI GRCGYC 1 cut(s) 147
BstAFI CTTAAG 1 cut(s) 983
BstAUI TGTACA 1 cut(s) 1268
BstBI TTCGAA 2 cut(s) 55, 578
BstC8I GCNNGC 1 cut(s) 1047
BstDEI CTNAG 2 cut(s) 371, 748
BstENI CCTNNNNNAGG 1 cut(s) 1133
BstF5I GGATG 4 cut(s) 150, 339, 900, 1008
BstFNI CGCG 1 cut(s) 1112
BstHHI GCGC 4 cut(s) 682, 944, 975, 1114
BstKTI GATC 4 cut(s) 25, 91, 478, 664
BstMAI GTCTC 2 cut(s) 847, 926
BstMBI GATC 4 cut(s) 22, 88, 475, 661
BstMWI GCNNNNNNNGC 6 cut(s) 761, 807, 816, 1061, 1070, 1286
BstNI CCWGG 1 cut(s) 487
BstSCI CCNGG 2 cut(s) 485, 571
BstSFI CTRYAG 1 cut(s) 600
BstUI CGCG 1 cut(s) 1112
BstV1I GCAGC 6 cut(s) 614, 694, 717, 819, 1183, 1264
BstV2I GAAGAC 3 cut(s) 399, 587, 1146
BstX2I RGATCY 1 cut(s) 475
BstXI CCANNNNNNTGG 1 cut(s) 725
BstYI RGATCY 1 cut(s) 475
Bsu15I ATCGAT 1 cut(s) 87
Bsu36I CCTNAGG 1 cut(s) 748
BsuI GTATCC 1 cut(s) 941
BsuRI GGCC 6 cut(s) 544, 672, 729, 755, 861, 873
BsuTUI ATCGAT 1 cut(s) 87
BtgZI GCGATG 1 cut(s) 1234
BtrI CACGTC 2 cut(s) 773, 814
BtsCI GGATG 4 cut(s) 150, 339, 900, 1008
BtsI GCAGTG 1 cut(s) 101
BtsIMutI CAGTG 2 cut(s) 101, 731
Cac8I GCNNGC 1 cut(s) 1047
CaiI CAGNNNCTG 2 cut(s) 521, 1277
CciI TCATGA 1 cut(s) 1089
CfoI GCGC 4 cut(s) 682, 944, 975, 1114
Cfr10I RCCGGY 3 cut(s) 499, 540, 821
Cfr13I GGNCC 6 cut(s) 191, 543, 671, 728, 753, 961
ClaI ATCGAT 1 cut(s) 87
CseI GACGC 2 cut(s) 767, 1118
Csp6I GTAC 2 cut(s) 789, 1269
CspAI ACCGGT 1 cut(s) 821
CviAII CATG 4 cut(s) 107, 304, 1090, 1102
CviQI GTAC 2 cut(s) 789, 1269
DdeI CTNAG 2 cut(s) 371, 748
DpnI GATC 4 cut(s) 24, 90, 477, 663
DpnII GATC 4 cut(s) 22, 88, 475, 661
DriI GACNNNNNGTC 1 cut(s) 197
EaeI YGGCCR 2 cut(s) 859, 871
Eam1104I CTCTTC 1 cut(s) 79
Eam1105I GACNNNNNGTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 79
Eco47I GGWCC 2 cut(s) 191, 961
Eco57I CTGAAG 2 cut(s) 208, 498
Eco81I CCTNAGG 1 cut(s) 748
EcoNI CCTNNNNNAGG 1 cut(s) 1133
EcoRII CCWGG 1 cut(s) 485
Esp3I CGTCTC 1 cut(s) 847
FaeI CATG 4 cut(s) 110, 307, 1093, 1105
FaiI YATR 9 cut(s) 108, 305, 608, 954, 1082, 1091, 1103, 1156, 1227
FalI AAGNNNNNCTT 4 cut(s) 26, 58, 902, 934
FaqI GGGAC 2 cut(s) 14, 623
FatI CATG 4 cut(s) 106, 303, 1089, 1101
Fnu4HI GCNGC 8 cut(s) 130, 462, 603, 683, 706, 808, 1172, 1278
FokI GGATG 4 cut(s) 137, 326, 907, 995
Fsp4HI GCNGC 8 cut(s) 130, 462, 603, 683, 706, 808, 1172, 1278
FspBI CTAG 5 cut(s) 155, 242, 929, 1020, 1281
GlaI GCGC 4 cut(s) 681, 943, 974, 1113
GluI GCNGC 8 cut(s) 130, 462, 603, 683, 706, 808, 1172, 1278
GsaI CCCAGC 1 cut(s) 653
HaeIII GGCC 6 cut(s) 544, 672, 729, 755, 861, 873
HapII CCGG 6 cut(s) 500, 541, 573, 822, 858, 892
HgaI GACGC 2 cut(s) 767, 1118
HhaI GCGC 4 cut(s) 682, 944, 975, 1114
Hin1I GRCGYC 1 cut(s) 147
Hin1II CATG 4 cut(s) 110, 307, 1093, 1105
Hin6I GCGC 4 cut(s) 680, 942, 973, 1112
HinP1I GCGC 4 cut(s) 680, 942, 973, 1112
HincII GTYRAC 3 cut(s) 827, 837, 851
HindII GTYRAC 3 cut(s) 827, 837, 851
HpaII CCGG 6 cut(s) 500, 541, 573, 822, 858, 892
HphI GGTGA 1 cut(s) 582
Hpy166II GTNNAC 3 cut(s) 827, 837, 851
Hpy188I TCNGA 8 cut(s) 22, 79, 451, 517, 527, 550, 965, 1026
Hpy188III TCNNGA 5 cut(s) 184, 892, 1090, 1190, 1205
Hpy8I GTNNAC 3 cut(s) 827, 837, 851
Hpy99I CGWCG 3 cut(s) 149, 669, 834
HpyAV CCTTC 6 cut(s) 62, 288, 421, 449, 522, 652
HpyCH4III ACNGT 2 cut(s) 249, 841
HpyCH4IV ACGT 7 cut(s) 147, 724, 772, 813, 829, 1029, 1185
HpyCH4V TGCA 2 cut(s) 106, 602
HpyF10VI GCNNNNNNNGC 6 cut(s) 761, 807, 816, 1061, 1070, 1286
HpyF3I CTNAG 2 cut(s) 371, 748
HpySE526I ACGT 7 cut(s) 147, 724, 772, 813, 829, 1029, 1185
Hsp92I GRCGYC 1 cut(s) 147
Hsp92II CATG 4 cut(s) 110, 307, 1093, 1105
HspAI GCGC 4 cut(s) 680, 942, 973, 1112
Kpn2I TCCGGA 1 cut(s) 891
Kzo9I GATC 4 cut(s) 22, 88, 475, 661
LmnI GCTCC 3 cut(s) 79, 1004, 1119
Lsp1109I GCAGC 6 cut(s) 614, 694, 717, 819, 1183, 1264
LweI GCATC 2 cut(s) 348, 810
MaeI CTAG 5 cut(s) 155, 242, 929, 1020, 1281
MaeII ACGT 7 cut(s) 147, 724, 772, 813, 829, 1029, 1185
MaeIII GTNAC 3 cut(s) 738, 899, 1190
MalI GATC 4 cut(s) 24, 90, 477, 663
MboI GATC 4 cut(s) 22, 88, 475, 661
MboII GAAGA 9 cut(s) 4, 7, 66, 218, 359, 404, 485, 592, 1151
MflI RGATCY 1 cut(s) 475
MhlI GDGCHC 1 cut(s) 1035
MluCI AATT 4 cut(s) 122, 444, 481, 1083
MmeI TCCRAC 2 cut(s) 339, 505
MroI TCCGGA 1 cut(s) 891
MseI TTAA 2 cut(s) 984, 1041
MslI CAYNNNNRTG 2 cut(s) 275, 1104
MspCI CTTAAG 1 cut(s) 983
MspI CCGG 6 cut(s) 500, 541, 573, 822, 858, 892
MspR9I CCNGG 2 cut(s) 487, 573
MvaI CCWGG 1 cut(s) 487
MvnI CGCG 1 cut(s) 1112
MwoI GCNNNNNNNGC 6 cut(s) 761, 807, 816, 1061, 1070, 1286
NciI CCSGG 1 cut(s) 573
NdeII GATC 4 cut(s) 22, 88, 475, 661
NlaIII CATG 4 cut(s) 110, 307, 1093, 1105
NlaIV GGNNCC 4 cut(s) 507, 754, 962, 1006
NmuCI GTSAC 1 cut(s) 1190
NspV TTCGAA 2 cut(s) 55, 578
PagI TCATGA 1 cut(s) 1089
PfoI TCCNGGA 1 cut(s) 485
PinAI ACCGGT 1 cut(s) 821
PkrI GCNGC 8 cut(s) 131, 463, 604, 684, 707, 809, 1173, 1279
Psp1406I AACGTT 1 cut(s) 1185
Psp6I CCWGG 1 cut(s) 485
PspFI CCCAGC 1 cut(s) 649
PspGI CCWGG 1 cut(s) 485
PspN4I GGNNCC 4 cut(s) 507, 754, 962, 1006
PspPI GGNCC 6 cut(s) 191, 543, 671, 728, 753, 961
PstI CTGCAG 1 cut(s) 604
PstNI CAGNNNCTG 2 cut(s) 521, 1277
PsuI RGATCY 1 cut(s) 475
RsaI GTAC 2 cut(s) 790, 1270
RsaNI GTAC 2 cut(s) 789, 1269
RseI CAYNNNNRTG 2 cut(s) 275, 1104
SaqAI TTAA 2 cut(s) 984, 1041
SatI GCNGC 8 cut(s) 130, 462, 603, 683, 706, 808, 1172, 1278
Sau3AI GATC 4 cut(s) 22, 88, 475, 661
Sau96I GGNCC 6 cut(s) 191, 543, 671, 728, 753, 961
ScrFI CCNGG 2 cut(s) 487, 573
SduI GDGCHC 1 cut(s) 1035
SfaNI GCATC 2 cut(s) 348, 810
SfcI CTRYAG 1 cut(s) 600
SfuI TTCGAA 2 cut(s) 55, 578
SinI GGWCC 2 cut(s) 191, 961
SmiMI CAYNNNNRTG 2 cut(s) 275, 1104
SmlI CTYRAG 2 cut(s) 983, 1166
SmoI CTYRAG 2 cut(s) 983, 1166
Sse9I AATT 4 cut(s) 122, 444, 481, 1083
SsiI CCGC 6 cut(s) 129, 459, 462, 503, 799, 1234
SspMI CTAG 5 cut(s) 155, 242, 929, 1020, 1281
StyD4I CCNGG 2 cut(s) 485, 571
TaaI ACNGT 2 cut(s) 249, 841
TaiI ACGT 7 cut(s) 150, 727, 775, 816, 832, 1032, 1188
TaqI TCGA 6 cut(s) 55, 87, 345, 536, 578, 664
TasI AATT 4 cut(s) 122, 444, 481, 1083
TatI WGTACW 1 cut(s) 1268
TauI GCSGC 2 cut(s) 132, 464
Tru1I TTAA 2 cut(s) 984, 1041
Tru9I TTAA 2 cut(s) 984, 1041
TscAI CASTG 2 cut(s) 108, 738
TseFI GTSAC 1 cut(s) 1190
TseI GCWGC 6 cut(s) 602, 682, 705, 807, 1171, 1277
Tsp45I GTSAC 1 cut(s) 1190
TspDTI ATGAA 2 cut(s) 1118, 1137
TspGWI ACGGA 1 cut(s) 227
TspRI CASTG 2 cut(s) 108, 738
Vha464I CTTAAG 1 cut(s) 983
VpaK11BI GGWCC 2 cut(s) 191, 961
XagI CCTNNNNNAGG 1 cut(s) 1133
XapI RAATTY 2 cut(s) 444, 481
XcmI CCANNNNNNNNNTGG 1 cut(s) 1152
XspI CTAG 5 cut(s) 155, 242, 929, 1020, 1281
ZraI GACGTC 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.