RLG00000029351

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0015766
Physical Location & Seq
Reverse (-)
36961726 .. 36964861
3136 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029351

Sequence Viewer

Length: 567 bp
ATGTTCTTGTTCGACCTTCGAACCCATCTCCACTTCTCTCCGGAGCTTATCGATCTTGTTGTGGCACTGCATGGCGATCTTGAATGGCGAGACCAGTGGGAATTGGGCTGCGAGGGTGGTGACTACGTCATCCCAGTTGGTGGCTTTCAGATTGGTGCGGTCGAGAGAGGACCACTTGTCCTTGAAGATGGAGATGAGGGCTTCGGCCTCGTTGTCGGTCCAGCAAGGCGGCGGGGGGTTGAGGAGGACATTGGGGGTGCGTTTGGTGACTGTGTGGCCGACGAAGACGATGAACTCCTTGACGCTAGACCTCTAGAAGTAGCCGAAGTGGGAGGTATCGAAGGCGTTGGCCAATATGACCGGGTCGGATCCTTTCGGTTTGCACTTGATGACCAACAAGGCCATGATCTTCATCACAGTGAAGGTGGTATACCGAATTGTGACTCAGAGACGACGATTCGTGTTCCGTCAATTCAGGACCTCGACTCGTTCACGAAGGGCTTCGAGGAAGAGACTTTCGGCTATGGAGGACGAGCTCCGATCTATGATCCTAGAGCTCGATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

20.66

Weight (kDa)

4.24

Isoelectric Point (pI)

44.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 140
AccI GTMKAC 1 cut(s) 430
AccIII TCCGGA 1 cut(s) 40
AciI CCGC 3 cut(s) 158, 229, 232
AclWI GGATC 3 cut(s) 363, 376, 542
AcoI YGGCCR 2 cut(s) 276, 349
AfiI CCNNNNNNNGG 1 cut(s) 140
AgsI TTSAA 2 cut(s) 83, 185
AhdI GACNNNNNGTC 1 cut(s) 176
AluBI AGCT 3 cut(s) 46, 536, 557
AluI AGCT 3 cut(s) 46, 536, 557
Alw21I GWGCWC 2 cut(s) 538, 559
Alw26I GTCTC 3 cut(s) 84, 443, 506
AlwI GGATC 3 cut(s) 363, 376, 542
Aor13HI TCCGGA 1 cut(s) 40
AoxI GGCC 4 cut(s) 205, 276, 349, 400
ApeKI GCWGC 1 cut(s) 108
Asp700I GAANNNNTTC 1 cut(s) 500
AspS9I GGNCC 3 cut(s) 170, 218, 478
AsuC2I CCSGG 1 cut(s) 362
AsuHPI GGTGA 2 cut(s) 131, 278
AsuII TTCGAA 1 cut(s) 19
AvaII GGWCC 3 cut(s) 170, 218, 478
BalI TGGCCA 1 cut(s) 351
BamHI GGATCC 1 cut(s) 368
BanII GRGCYC 2 cut(s) 538, 559
BarI GAAGNNNNNNTAC 2 cut(s) 414, 446
BbsI GAAGAC 1 cut(s) 291
Bbv12I GWGCWC 2 cut(s) 538, 559
BbvI GCAGC 1 cut(s) 95
BccI CCATC 3 cut(s) 33, 182, 555
BcnI CCSGG 1 cut(s) 362
BcoDI GTCTC 3 cut(s) 84, 443, 506
BfaI CTAG 3 cut(s) 306, 314, 552
BisI GCNGC 2 cut(s) 109, 230
BlsI GCNGC 2 cut(s) 110, 231
Bme1390I CCNGG 1 cut(s) 362
Bme18I GGWCC 3 cut(s) 170, 218, 478
BmeRI GACNNNNNGTC 1 cut(s) 176
BmgT120I GGNCC 3 cut(s) 170, 218, 478
BmiI GGNNCC 1 cut(s) 370
BmrFI CCNGG 1 cut(s) 362
BmrI ACTGGG 1 cut(s) 128
BmuI ACTGGG 1 cut(s) 128
BpiI GAAGAC 1 cut(s) 291
Bpu14I TTCGAA 1 cut(s) 19
BpuMI CCSGG 1 cut(s) 362
Bsa29I ATCGAT 1 cut(s) 51
BsaBI GATNNNNATC 1 cut(s) 411
BsaI GGTCTC 1 cut(s) 84
BsaWI WCCGGW 1 cut(s) 40
Bsc4I CCNNNNNNNGG 1 cut(s) 140
Bse1I ACTGG 2 cut(s) 94, 134
Bse8I GATNNNNATC 1 cut(s) 411
BseAI TCCGGA 1 cut(s) 40
BseCI ATCGAT 1 cut(s) 51
BseGI GGATG 1 cut(s) 129
BseJI GATNNNNATC 1 cut(s) 411
BseLI CCNNNNNNNGG 1 cut(s) 140
BseMII CTCAG 1 cut(s) 459
BseNI ACTGG 2 cut(s) 94, 134
BseRI GAGGAG 1 cut(s) 257
BseXI GCAGC 1 cut(s) 95
Bsh1285I CGRYCG 1 cut(s) 162
BshFI GGCC 4 cut(s) 207, 278, 351, 402
BshVI ATCGAT 1 cut(s) 51
BsiEI CGRYCG 1 cut(s) 162
BsiHKAI GWGCWC 2 cut(s) 538, 559
BsiSI CCGG 2 cut(s) 41, 361
BslI CCNNNNNNNGG 1 cut(s) 140
BsmAI GTCTC 3 cut(s) 84, 443, 506
BsmBI CGTCTC 1 cut(s) 443
BsnI GGCC 4 cut(s) 207, 278, 351, 402
Bso31I GGTCTC 1 cut(s) 84
Bsp119I TTCGAA 1 cut(s) 19
Bsp1286I GDGCHC 2 cut(s) 538, 559
Bsp13I TCCGGA 1 cut(s) 40
Bsp143I GATC 6 cut(s) 52, 76, 368, 406, 540, 547
BspACI CCGC 3 cut(s) 158, 229, 232
BspANI GGCC 4 cut(s) 207, 278, 351, 402
BspCNI CTCAG 1 cut(s) 458
BspDI ATCGAT 1 cut(s) 51
BspEI TCCGGA 1 cut(s) 40
BspLI GGNNCC 1 cut(s) 370
BspPI GGATC 3 cut(s) 363, 376, 542
BspT104I TTCGAA 1 cut(s) 19
BspTNI GGTCTC 1 cut(s) 84
BsrI ACTGG 2 cut(s) 94, 134
BssMI GATC 6 cut(s) 52, 76, 368, 406, 540, 547
BssNAI GTATAC 1 cut(s) 431
Bst1107I GTATAC 1 cut(s) 431
Bst4CI ACNGT 2 cut(s) 272, 419
Bst6I CTCTTC 1 cut(s) 504
BstBI TTCGAA 1 cut(s) 19
BstDEI CTNAG 1 cut(s) 445
BstF5I GGATG 1 cut(s) 129
BstKTI GATC 6 cut(s) 55, 79, 371, 409, 543, 550
BstMAI GTCTC 3 cut(s) 84, 443, 506
BstMBI GATC 6 cut(s) 52, 76, 368, 406, 540, 547
BstMCI CGRYCG 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 360
BstV1I GCAGC 1 cut(s) 95
BstV2I GAAGAC 1 cut(s) 291
BstX2I RGATCY 1 cut(s) 368
BstYI RGATCY 1 cut(s) 368
BstZ17I GTATAC 1 cut(s) 431
Bsu15I ATCGAT 1 cut(s) 51
BsuRI GGCC 4 cut(s) 207, 278, 351, 402
BsuTUI ATCGAT 1 cut(s) 51
BtsCI GGATG 1 cut(s) 129
BtsI GCAGTG 1 cut(s) 65
BtsIMutI CAGTG 3 cut(s) 65, 101, 424
Cfr13I GGNCC 3 cut(s) 170, 218, 478
ClaI ATCGAT 1 cut(s) 51
CseI GACGC 1 cut(s) 311
CviAII CATG 2 cut(s) 71, 404
DdeI CTNAG 1 cut(s) 445
DpnI GATC 6 cut(s) 54, 78, 370, 408, 542, 549
DpnII GATC 6 cut(s) 52, 76, 368, 406, 540, 547
DriI GACNNNNNGTC 1 cut(s) 176
EaeI YGGCCR 2 cut(s) 276, 349
Eam1104I CTCTTC 1 cut(s) 504
Eam1105I GACNNNNNGTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 504
Ecl136II GAGCTC 2 cut(s) 536, 557
Eco24I GRGCYC 2 cut(s) 538, 559
Eco31I GGTCTC 1 cut(s) 84
Eco47I GGWCC 3 cut(s) 170, 218, 478
Eco53kI GAGCTC 2 cut(s) 536, 557
EcoICRI GAGCTC 2 cut(s) 536, 557
EcoO109I RGGNCCY 1 cut(s) 478
EcoT38I GRGCYC 2 cut(s) 538, 559
Esp3I CGTCTC 1 cut(s) 443
FaeI CATG 2 cut(s) 74, 407
FaiI YATR 6 cut(s) 72, 357, 405, 431, 525, 546
FatI CATG 2 cut(s) 70, 403
FauI CCCGC 1 cut(s) 225
FblI GTMKAC 1 cut(s) 430
Fnu4HI GCNGC 2 cut(s) 109, 230
FokI GGATG 1 cut(s) 116
FriOI GRGCYC 2 cut(s) 538, 559
Fsp4HI GCNGC 2 cut(s) 109, 230
FspBI CTAG 3 cut(s) 306, 314, 552
GluI GCNGC 2 cut(s) 109, 230
HaeIII GGCC 4 cut(s) 207, 278, 351, 402
HapII CCGG 2 cut(s) 41, 361
HgaI GACGC 1 cut(s) 311
Hin1II CATG 2 cut(s) 74, 407
HinfI GANTC 3 cut(s) 443, 457, 485
HpaII CCGG 2 cut(s) 41, 361
HphI GGTGA 2 cut(s) 131, 278
Hpy166II GTNNAC 2 cut(s) 431, 492
Hpy188I TCNGA 4 cut(s) 150, 368, 448, 540
Hpy188III TCNNGA 6 cut(s) 41, 80, 163, 314, 476, 493
Hpy8I GTNNAC 2 cut(s) 431, 492
Hpy99I CGWCG 2 cut(s) 284, 457
HpyAV CCTTC 4 cut(s) 26, 335, 416, 490
HpyCH4III ACNGT 2 cut(s) 272, 419
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 2 cut(s) 70, 383
HpyF3I CTNAG 1 cut(s) 445
HpySE526I ACGT 1 cut(s) 126
Hsp92II CATG 2 cut(s) 74, 407
Kpn2I TCCGGA 1 cut(s) 40
Kzo9I GATC 6 cut(s) 52, 76, 368, 406, 540, 547
LmnI GCTCC 2 cut(s) 43, 541
LpnPI CCDG 6 cut(s) 54, 107, 147, 234, 374, 461
Lsp1109I GCAGC 1 cut(s) 95
MaeI CTAG 3 cut(s) 306, 314, 552
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 3 cut(s) 119, 266, 440
MalI GATC 6 cut(s) 54, 78, 370, 408, 542, 549
MboI GATC 6 cut(s) 52, 76, 368, 406, 540, 547
MboII GAAGA 4 cut(s) 197, 296, 401, 521
MflI RGATCY 1 cut(s) 368
MhlI GDGCHC 2 cut(s) 538, 559
MlsI TGGCCA 1 cut(s) 351
MluCI AATT 3 cut(s) 101, 436, 471
MluNI TGGCCA 1 cut(s) 351
MlyI GAGTC 2 cut(s) 437, 479
MmeI TCCRAC 1 cut(s) 346
Mox20I TGGCCA 1 cut(s) 351
MroI TCCGGA 1 cut(s) 40
MroXI GAANNNNTTC 1 cut(s) 500
MscI TGGCCA 1 cut(s) 351
MslI CAYNNNNRTG 1 cut(s) 417
Msp20I TGGCCA 1 cut(s) 351
MspI CCGG 2 cut(s) 41, 361
MspR9I CCNGG 1 cut(s) 362
NciI CCSGG 1 cut(s) 362
NdeII GATC 6 cut(s) 52, 76, 368, 406, 540, 547
NlaIII CATG 2 cut(s) 74, 407
NlaIV GGNNCC 1 cut(s) 370
NmuCI GTSAC 3 cut(s) 119, 266, 440
NspV TTCGAA 1 cut(s) 19
PdmI GAANNNNTTC 1 cut(s) 500
PfeI GAWTC 1 cut(s) 457
PflFI GACNNNGTC 2 cut(s) 125, 362
PflMI CCANNNNNTGG 1 cut(s) 140
PkrI GCNGC 2 cut(s) 110, 231
PleI GAGTC 2 cut(s) 437, 479
PpsI GAGTC 2 cut(s) 437, 479
PpuMI RGGWCCY 1 cut(s) 478
Psp124BI GAGCTC 2 cut(s) 538, 559
Psp5II RGGWCCY 1 cut(s) 478
PspN4I GGNNCC 1 cut(s) 370
PspPI GGNCC 3 cut(s) 170, 218, 478
PspPPI RGGWCCY 1 cut(s) 478
PsuI RGATCY 1 cut(s) 368
PsyI GACNNNGTC 2 cut(s) 125, 362
RseI CAYNNNNRTG 1 cut(s) 417
SacI GAGCTC 2 cut(s) 538, 559
SatI GCNGC 2 cut(s) 109, 230
Sau3AI GATC 6 cut(s) 52, 76, 368, 406, 540, 547
Sau96I GGNCC 3 cut(s) 170, 218, 478
SchI GAGTC 2 cut(s) 437, 479
ScrFI CCNGG 1 cut(s) 362
SduI GDGCHC 2 cut(s) 538, 559
SetI ASST 9 cut(s) 18, 48, 129, 313, 337, 427, 483, 538, 559
SfuI TTCGAA 1 cut(s) 19
SinI GGWCC 3 cut(s) 170, 218, 478
SmiMI CAYNNNNRTG 1 cut(s) 417
Sse9I AATT 3 cut(s) 101, 436, 471
SsiI CCGC 3 cut(s) 158, 229, 232
SspMI CTAG 3 cut(s) 306, 314, 552
SstI GAGCTC 2 cut(s) 538, 559
StyD4I CCNGG 1 cut(s) 360
TaaI ACNGT 2 cut(s) 272, 419
TaiI ACGT 1 cut(s) 129
TaqI TCGA 8 cut(s) 12, 19, 51, 162, 339, 483, 504, 559
TaqII GACCGA 1 cut(s) 206
TasI AATT 3 cut(s) 101, 436, 471
TauI GCSGC 1 cut(s) 232
TfiI GAWTC 1 cut(s) 457
TscAI CASTG 3 cut(s) 72, 101, 424
TseFI GTSAC 3 cut(s) 119, 266, 440
TseI GCWGC 1 cut(s) 108
Tsp45I GTSAC 3 cut(s) 119, 266, 440
TspDTI ATGAA 2 cut(s) 306, 401
TspGWI ACGGA 1 cut(s) 456
TspRI CASTG 3 cut(s) 72, 101, 424
Tth111I GACNNNGTC 2 cut(s) 125, 362
Van91I CCANNNNNTGG 1 cut(s) 140
VpaK11BI GGWCC 3 cut(s) 170, 218, 478
XbaI TCTAGA 1 cut(s) 313
XmiI GTMKAC 1 cut(s) 430
XmnI GAANNNNTTC 1 cut(s) 500
XspI CTAG 3 cut(s) 306, 314, 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.