Rh6DG450200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0015766
Physical Location & Seq
Reverse (-)
62260587 .. 62260829
243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG450200.1

Sequence Viewer

Length: 243 bp
ATGATCTCAATTGACGCTGGACCTCTGGAAGTAGCCGGAGTGGGAGGTATCGAAGGCGTTGGCCAATATGACCGGGTCGGATCCTTCCGGTTTGCACTTGATGACCAGCAAGCCGTGATCTTTGTCGCAGCGAAGTGGTATACCGGTTGTGACTCAGAGACGATGATTCGTGTTCCGGCAATTCAGGACCTCGACTCATTCATGGAGAACTTCGAGGAAGAGATTTCCGGCGATGGAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.59

Weight (kDa)

4.05

Isoelectric Point (pI)

41.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 140
AclWI GGATC 2 cut(s) 75, 88
AcoI YGGCCR 1 cut(s) 61
AgeI ACCGGT 1 cut(s) 143
Alw26I GTCTC 1 cut(s) 152
AlwI GGATC 2 cut(s) 75, 88
AoxI GGCC 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 128
AsiGI ACCGGT 1 cut(s) 143
AspS9I GGNCC 2 cut(s) 20, 187
AsuC2I CCSGG 1 cut(s) 74
AvaII GGWCC 2 cut(s) 20, 187
BalI TGGCCA 1 cut(s) 63
BamHI GGATCC 1 cut(s) 80
BbvI GCAGC 1 cut(s) 140
BccI CCATC 1 cut(s) 227
BceAI ACGGC 1 cut(s) 98
BcnI CCSGG 1 cut(s) 74
BcoDI GTCTC 1 cut(s) 152
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
Bme1390I CCNGG 1 cut(s) 74
Bme18I GGWCC 2 cut(s) 20, 187
BmgT120I GGNCC 2 cut(s) 20, 187
BmiI GGNNCC 1 cut(s) 82
BmrFI CCNGG 1 cut(s) 74
BpuMI CCSGG 1 cut(s) 74
BsaWI WCCGGW 2 cut(s) 87, 143
Bse118I RCCGGY 1 cut(s) 143
BseMII CTCAG 1 cut(s) 168
BseXI GCAGC 1 cut(s) 140
BshFI GGCC 1 cut(s) 63
BshTI ACCGGT 1 cut(s) 143
BsiSI CCGG 6 cut(s) 36, 73, 88, 144, 176, 228
BsmAI GTCTC 1 cut(s) 152
BsmBI CGTCTC 1 cut(s) 152
BsnI GGCC 1 cut(s) 63
Bsp143I GATC 3 cut(s) 3, 80, 117
BspANI GGCC 1 cut(s) 63
BspCNI CTCAG 1 cut(s) 167
BspLI GGNNCC 1 cut(s) 82
BspPI GGATC 2 cut(s) 75, 88
BsrFI RCCGGY 1 cut(s) 143
BssAI RCCGGY 1 cut(s) 143
BssMI GATC 3 cut(s) 3, 80, 117
BssNAI GTATAC 1 cut(s) 141
Bst1107I GTATAC 1 cut(s) 141
Bst6I CTCTTC 1 cut(s) 213
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 1 cut(s) 154
BstKTI GATC 3 cut(s) 6, 83, 120
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 3 cut(s) 3, 80, 117
BstSCI CCNGG 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 140
BstX2I RGATCY 1 cut(s) 80
BstYI RGATCY 1 cut(s) 80
BstZ17I GTATAC 1 cut(s) 141
BsuRI GGCC 1 cut(s) 63
Cac8I GCNNGC 1 cut(s) 111
Cfr10I RCCGGY 1 cut(s) 143
Cfr13I GGNCC 2 cut(s) 20, 187
CseI GACGC 1 cut(s) 23
CspAI ACCGGT 1 cut(s) 143
CviAII CATG 1 cut(s) 202
CviJI RGCY 3 cut(s) 35, 63, 113
CviKI_1 RGCY 3 cut(s) 35, 63, 113
DdeI CTNAG 1 cut(s) 154
DpnI GATC 3 cut(s) 5, 82, 119
DpnII GATC 3 cut(s) 3, 80, 117
EaeI YGGCCR 1 cut(s) 61
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco47I GGWCC 2 cut(s) 20, 187
EcoO109I RGGNCCY 1 cut(s) 187
Esp3I CGTCTC 1 cut(s) 152
FaeI CATG 1 cut(s) 205
FaiI YATR 3 cut(s) 69, 141, 203
FatI CATG 1 cut(s) 201
FblI GTMKAC 1 cut(s) 140
Fnu4HI GCNGC 1 cut(s) 129
Fsp4HI GCNGC 1 cut(s) 129
GluI GCNGC 1 cut(s) 129
HaeIII GGCC 1 cut(s) 63
HapII CCGG 6 cut(s) 36, 73, 88, 144, 176, 228
HgaI GACGC 1 cut(s) 23
Hin1II CATG 1 cut(s) 205
HinfI GANTC 3 cut(s) 152, 166, 194
HpaII CCGG 6 cut(s) 36, 73, 88, 144, 176, 228
Hpy166II GTNNAC 1 cut(s) 141
Hpy188I TCNGA 2 cut(s) 80, 157
Hpy188III TCNNGA 2 cut(s) 26, 185
Hpy8I GTNNAC 1 cut(s) 141
HpyAV CCTTC 2 cut(s) 47, 94
HpyCH4V TGCA 1 cut(s) 95
HpyF3I CTNAG 1 cut(s) 154
Hsp92II CATG 1 cut(s) 205
Kzo9I GATC 3 cut(s) 3, 80, 117
LpnPI CCDG 9 cut(s) 3, 11, 49, 86, 101, 119, 157, 170, 189
Lsp1109I GCAGC 1 cut(s) 140
MaeIII GTNAC 1 cut(s) 149
MalI GATC 3 cut(s) 5, 82, 119
MboI GATC 3 cut(s) 3, 80, 117
MboII GAAGA 1 cut(s) 230
MfeI CAATTG 1 cut(s) 9
MflI RGATCY 1 cut(s) 80
MlsI TGGCCA 1 cut(s) 63
MluCI AATT 2 cut(s) 9, 180
MluNI TGGCCA 1 cut(s) 63
MlyI GAGTC 2 cut(s) 146, 188
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 5 cut(s) 33, 38, 200, 208, 230
Mox20I TGGCCA 1 cut(s) 63
MscI TGGCCA 1 cut(s) 63
Msp20I TGGCCA 1 cut(s) 63
MspI CCGG 6 cut(s) 36, 73, 88, 144, 176, 228
MspR9I CCNGG 1 cut(s) 74
MunI CAATTG 1 cut(s) 9
NciI CCSGG 1 cut(s) 74
NdeII GATC 3 cut(s) 3, 80, 117
NlaIII CATG 1 cut(s) 205
NlaIV GGNNCC 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 149
PfeI GAWTC 1 cut(s) 166
PflFI GACNNNGTC 1 cut(s) 74
PinAI ACCGGT 1 cut(s) 143
PkrI GCNGC 1 cut(s) 130
PleI GAGTC 2 cut(s) 146, 188
PpsI GAGTC 2 cut(s) 146, 188
PpuMI RGGWCCY 1 cut(s) 187
Psp5II RGGWCCY 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 82
PspPI GGNCC 2 cut(s) 20, 187
PspPPI RGGWCCY 1 cut(s) 187
PsuI RGATCY 1 cut(s) 80
PsyI GACNNNGTC 1 cut(s) 74
SatI GCNGC 1 cut(s) 129
Sau3AI GATC 3 cut(s) 3, 80, 117
Sau96I GGNCC 2 cut(s) 20, 187
SchI GAGTC 2 cut(s) 146, 188
ScrFI CCNGG 1 cut(s) 74
SetI ASST 3 cut(s) 25, 49, 192
SinI GGWCC 2 cut(s) 20, 187
Sse9I AATT 2 cut(s) 9, 180
StyD4I CCNGG 1 cut(s) 72
TaqI TCGA 3 cut(s) 51, 192, 213
TasI AATT 2 cut(s) 9, 180
TfiI GAWTC 1 cut(s) 166
TseFI GTSAC 1 cut(s) 149
TseI GCWGC 1 cut(s) 128
Tsp45I GTSAC 1 cut(s) 149
TspDTI ATGAA 1 cut(s) 190
Tth111I GACNNNGTC 1 cut(s) 74
VpaK11BI GGWCC 2 cut(s) 20, 187
XmiI GTMKAC 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.