Rh5CG359900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0015766
Physical Location & Seq
Reverse (-)
42856865 .. 42857191
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG359900.1

Sequence Viewer

Length: 327 bp
ATGGCGGTACTCTTCTTCTCCGATCTCGTCCCAAAGATGTTCTTGTTCGACCTTCGAACCTATCTCCACTTCTCTCCGGAGCTTATCGATCTTGTTGTGGCACTGCGAGGCGGTCTTGAACGGCGAGACCAGTGGGAATTGGGCGGCGAGGGTTGCGGCGACGTCATCCCAGTTGGTGGCTTTGAGATTGGTTCGGCCGAGAGAGGACCACTTGTCCTTGAAGATGGAGATGAGGGCTTTGGCCTCGTTGTCGGTCTAGCACTGCGGCGGGGGGTTGGGGAGGACATTGGGGTGTGGGATAAGGAGAGAAGGGAGGGCGTAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.79

Weight (kDa)

4.46

Isoelectric Point (pI)

45.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 165
AccB7I CCANNNNNTGG 1 cut(s) 176
AccIII TCCGGA 1 cut(s) 76
AciI CCGC 6 cut(s) 5, 111, 144, 156, 265, 268
AcoI YGGCCR 1 cut(s) 195
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 1 cut(s) 9
AfiI CCNNNNNNNGG 1 cut(s) 176
AgsI TTSAA 2 cut(s) 119, 221
AhdI GACNNNNNGTC 1 cut(s) 212
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
Alw26I GTCTC 1 cut(s) 120
Aor13HI TCCGGA 1 cut(s) 76
AoxI GGCC 2 cut(s) 195, 241
AspS9I GGNCC 1 cut(s) 206
AsuII TTCGAA 1 cut(s) 55
AvaII GGWCC 1 cut(s) 206
BccI CCATC 1 cut(s) 218
BceAI ACGGC 1 cut(s) 137
BcoDI GTCTC 1 cut(s) 120
BfaI CTAG 1 cut(s) 257
BisI GCNGC 3 cut(s) 145, 157, 266
BlsI GCNGC 3 cut(s) 146, 158, 267
Bme18I GGWCC 1 cut(s) 206
BmeRI GACNNNNNGTC 1 cut(s) 212
BmgT120I GGNCC 1 cut(s) 206
BmrI ACTGGG 1 cut(s) 164
BmuI ACTGGG 1 cut(s) 164
Bpu14I TTCGAA 1 cut(s) 55
Bsa29I ATCGAT 1 cut(s) 87
BsaHI GRCGYC 1 cut(s) 162
BsaI GGTCTC 1 cut(s) 120
BsaWI WCCGGW 1 cut(s) 76
Bsc4I CCNNNNNNNGG 1 cut(s) 176
Bse1I ACTGG 2 cut(s) 130, 170
BseAI TCCGGA 1 cut(s) 76
BseCI ATCGAT 1 cut(s) 87
BseGI GGATG 1 cut(s) 165
BseLI CCNNNNNNNGG 1 cut(s) 176
BseNI ACTGG 2 cut(s) 130, 170
BseX3I CGGCCG 1 cut(s) 195
Bsh1285I CGRYCG 1 cut(s) 198
BshFI GGCC 2 cut(s) 197, 243
BshVI ATCGAT 1 cut(s) 87
BsiEI CGRYCG 1 cut(s) 198
BsiSI CCGG 1 cut(s) 77
BslFI GGGAC 1 cut(s) 14
BslI CCNNNNNNNGG 1 cut(s) 176
BsmAI GTCTC 1 cut(s) 120
BsmFI GGGAC 1 cut(s) 14
BsnI GGCC 2 cut(s) 197, 243
Bso31I GGTCTC 1 cut(s) 120
Bsp119I TTCGAA 1 cut(s) 55
Bsp13I TCCGGA 1 cut(s) 76
Bsp143I GATC 2 cut(s) 22, 88
BspACI CCGC 6 cut(s) 5, 111, 144, 156, 265, 268
BspANI GGCC 2 cut(s) 197, 243
BspDI ATCGAT 1 cut(s) 87
BspEI TCCGGA 1 cut(s) 76
BspT104I TTCGAA 1 cut(s) 55
BspTNI GGTCTC 1 cut(s) 120
BsrI ACTGG 2 cut(s) 130, 170
BssMI GATC 2 cut(s) 22, 88
BssNI GRCGYC 1 cut(s) 162
Bst6I CTCTTC 1 cut(s) 17
BstACI GRCGYC 1 cut(s) 162
BstBI TTCGAA 1 cut(s) 55
BstF5I GGATG 1 cut(s) 165
BstKTI GATC 2 cut(s) 25, 91
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 2 cut(s) 22, 88
BstMCI CGRYCG 1 cut(s) 198
BstMWI GCNNNNNNNGC 1 cut(s) 153
BstZI CGGCCG 1 cut(s) 195
Bsu15I ATCGAT 1 cut(s) 87
BsuRI GGCC 2 cut(s) 197, 243
BsuTUI ATCGAT 1 cut(s) 87
BtsCI GGATG 1 cut(s) 165
BtsI GCAGTG 2 cut(s) 101, 260
BtsIMutI CAGTG 3 cut(s) 101, 137, 260
Cfr13I GGNCC 1 cut(s) 206
ClaI ATCGAT 1 cut(s) 87
Csp6I GTAC 1 cut(s) 8
CviJI RGCY 5 cut(s) 82, 180, 197, 237, 243
CviKI_1 RGCY 5 cut(s) 82, 180, 197, 237, 243
CviQI GTAC 1 cut(s) 8
DpnI GATC 2 cut(s) 24, 90
DpnII GATC 2 cut(s) 22, 88
DriI GACNNNNNGTC 1 cut(s) 212
EaeI YGGCCR 1 cut(s) 195
EagI CGGCCG 1 cut(s) 195
Eam1104I CTCTTC 1 cut(s) 17
Eam1105I GACNNNNNGTC 1 cut(s) 212
EarI CTCTTC 1 cut(s) 17
EclXI CGGCCG 1 cut(s) 195
Eco31I GGTCTC 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 206
Eco52I CGGCCG 1 cut(s) 195
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FaqI GGGAC 1 cut(s) 14
FauI CCCGC 1 cut(s) 261
Fnu4HI GCNGC 3 cut(s) 145, 157, 266
FokI GGATG 1 cut(s) 152
Fsp4HI GCNGC 3 cut(s) 145, 157, 266
FspBI CTAG 1 cut(s) 257
GluI GCNGC 3 cut(s) 145, 157, 266
HaeIII GGCC 2 cut(s) 197, 243
HapII CCGG 1 cut(s) 77
Hin1I GRCGYC 1 cut(s) 162
HpaII CCGG 1 cut(s) 77
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 2 cut(s) 77, 116
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 2 cut(s) 62, 303
HpyCH4IV ACGT 1 cut(s) 162
HpyF10VI GCNNNNNNNGC 1 cut(s) 153
HpySE526I ACGT 1 cut(s) 162
Hsp92I GRCGYC 1 cut(s) 162
Kpn2I TCCGGA 1 cut(s) 76
Kzo9I GATC 2 cut(s) 22, 88
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 3 cut(s) 90, 143, 183
MaeI CTAG 1 cut(s) 257
MaeII ACGT 1 cut(s) 162
MalI GATC 2 cut(s) 24, 90
MboI GATC 2 cut(s) 22, 88
MboII GAAGA 3 cut(s) 4, 7, 233
MluCI AATT 1 cut(s) 137
MnlI CCTC 7 cut(s) 101, 142, 197, 226, 254, 274, 307
MroI TCCGGA 1 cut(s) 76
MslI CAYNNNNRTG 1 cut(s) 290
MspI CCGG 1 cut(s) 77
MwoI GCNNNNNNNGC 1 cut(s) 153
NdeII GATC 2 cut(s) 22, 88
NmeAIII GCCGAG 1 cut(s) 223
NspV TTCGAA 1 cut(s) 55
PflMI CCANNNNNTGG 1 cut(s) 176
PkrI GCNGC 3 cut(s) 146, 158, 267
PspPI GGNCC 1 cut(s) 206
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
RseI CAYNNNNRTG 1 cut(s) 290
SatI GCNGC 3 cut(s) 145, 157, 266
Sau3AI GATC 2 cut(s) 22, 88
Sau96I GGNCC 1 cut(s) 206
SetI ASST 5 cut(s) 54, 62, 84, 165, 325
SfuI TTCGAA 1 cut(s) 55
SinI GGWCC 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 290
Sse9I AATT 1 cut(s) 137
SsiI CCGC 6 cut(s) 5, 111, 144, 156, 265, 268
SspMI CTAG 1 cut(s) 257
TaiI ACGT 1 cut(s) 165
TaqI TCGA 3 cut(s) 48, 55, 87
TaqII GACCGA 1 cut(s) 242
TasI AATT 1 cut(s) 137
TauI GCSGC 3 cut(s) 147, 159, 268
TscAI CASTG 3 cut(s) 108, 137, 267
TspRI CASTG 3 cut(s) 108, 137, 267
Van91I CCANNNNNTGG 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 206
XspI CTAG 1 cut(s) 257
ZraI GACGTC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.