Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0015766

Physical Location & Seq

Genomic Coordinates Reverse (-)

54084222 .. 54085758

Gene Structure 1537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019599

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGTTCTTGTTCTACCTTGGAACCCATCTCCACTTCTCTCTGGAGCTTATCGATCTTGTTGTGGCACTGCATGGCAGTCTTGAATGGCGAGACCAGTGGGAATTGGGCAGCGAGGGTGGTGGCGAAGCCATCCCAGTTGGTGGCTTTGAGATTGGTGCGGTCGAGAGAGGACCACTTGTCCTTGAAGATAGAGATAAGGGCTTCGGCCTCGTTGTAGGTCCAGCACGGTGGCGGGGGGTTGAGGAGGACATTGGGGTGTGGGATAAGGAGATAAGGGAGGGCATAGCACCTCCATCAATCATTGATGACAATTATCATCAACTTGAATCTGTATCTCCGCCAAGACCCAGAAAGCCAGTATCGGACCTGACGTCCACCTTGCAGCTTCCAAACAGGACCGGACCACGCCAGACCTTCAGTCGCCGTCTGCCATTGACCAGCGAACTCAGGAGGTCGTTTGTTTGCCTTAGACGACTGCCACGAGCTGCAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

165

Amino Acids

18.39

Weight (kDa)

5.83

Isoelectric Point (pI)

54.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015766)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000002651 RLG00000011850 RLG00000019599 RLG00000023081 RLG00000029014 RLG00000029351
rosa_multiflora	Rmu_sc0001942.1_g000046
rosa_rugosa	Rorug05G0246800
rosa_samantha	Rh2AG212200 Rh5CG359900 Rh5DG159600 Rh5DG404900 Rh6AG221600 Rh6DG218800 Rh6DG450200 Rh7AG199700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	374
AccB7I	CCANNNNNTGG	1 cut(s)	140
AciI	CCGC	3 cut(s)	158, 232, 338
AcuI	CTGAAG	1 cut(s)	400
AcyI	GRCGYC	1 cut(s)	371
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	3 cut(s)	83, 185, 326
AhdI	GACNNNNNGTC	3 cut(s)	176, 370, 417
AluBI	AGCT	3 cut(s)	46, 385, 485
AluI	AGCT	3 cut(s)	46, 385, 485
Alw26I	GTCTC	1 cut(s)	84
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	3 cut(s)	108, 382, 485
AspS9I	GGNCC	5 cut(s)	170, 218, 364, 396, 401
AvaII	GGWCC	5 cut(s)	170, 218, 364, 396, 401
BauI	CACGAG	1 cut(s)	480
BbvI	GCAGC	3 cut(s)	120, 394, 472
BccI	CCATC	3 cut(s)	33, 137, 301
BceAI	ACGGC	1 cut(s)	408
BcoDI	GTCTC	1 cut(s)	84
BisI	GCNGC	3 cut(s)	109, 383, 486
BlsI	GCNGC	3 cut(s)	110, 384, 487
Bme18I	GGWCC	5 cut(s)	170, 218, 364, 396, 401
BmeRI	GACNNNNNGTC	3 cut(s)	176, 370, 417
BmgT120I	GGNCC	5 cut(s)	170, 218, 364, 396, 401
BmiI	GGNNCC	1 cut(s)	22
BmrI	ACTGGG	1 cut(s)	128
BmuI	ACTGGG	1 cut(s)	128
BpmI	CTGGAG	1 cut(s)	62
Bsa29I	ATCGAT	1 cut(s)	51
BsaHI	GRCGYC	1 cut(s)	371
BsaI	GGTCTC	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	16
BsaWI	WCCGGW	1 cut(s)	398
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse1I	ACTGG	3 cut(s)	94, 134, 356
BseCI	ATCGAT	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	16
BseGI	GGATG	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMII	CTCAG	1 cut(s)	460
BseNI	ACTGG	3 cut(s)	94, 134, 356
BseRI	GAGGAG	1 cut(s)	257
BseXI	GCAGC	3 cut(s)	120, 394, 472
Bsh1285I	CGRYCG	1 cut(s)	162
BshFI	GGCC	1 cut(s)	207
BshVI	ATCGAT	1 cut(s)	51
BsiEI	CGRYCG	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	399
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	1 cut(s)	84
BsnI	GGCC	1 cut(s)	207
Bso31I	GGTCTC	1 cut(s)	84
Bsp143I	GATC	1 cut(s)	52
BspACI	CCGC	3 cut(s)	158, 232, 338
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	1 cut(s)	459
BspDI	ATCGAT	1 cut(s)	51
BspLI	GGNNCC	1 cut(s)	22
BspTNI	GGTCTC	1 cut(s)	84
BsrI	ACTGG	3 cut(s)	94, 134, 356
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	1 cut(s)	52
BssNI	GRCGYC	1 cut(s)	371
BssSI	CACGAG	1 cut(s)	480
BssT1I	CCWWGG	1 cut(s)	16
Bst2BI	CACGAG	1 cut(s)	480
Bst4CI	ACNGT	1 cut(s)	228
BstACI	GRCGYC	1 cut(s)	371
BstDEI	CTNAG	2 cut(s)	446, 467
BstF5I	GGATG	1 cut(s)	129
BstKTI	GATC	1 cut(s)	55
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	1 cut(s)	52
BstMCI	CGRYCG	1 cut(s)	162
BstV1I	GCAGC	3 cut(s)	120, 394, 472
BstXI	CCANNNNNNTGG	1 cut(s)	228
Bsu15I	ATCGAT	1 cut(s)	51
BsuRI	GGCC	1 cut(s)	207
BsuTUI	ATCGAT	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	129
BtsI	GCAGTG	1 cut(s)	65
BtsIMutI	CAGTG	2 cut(s)	65, 101
Cfr13I	GGNCC	5 cut(s)	170, 218, 364, 396, 401
ClaI	ATCGAT	1 cut(s)	51
CviAII	CATG	1 cut(s)	71
CviJI	RGCY	8 cut(s)	46, 128, 144, 201, 207, 355, 385, 485
CviKI_1	RGCY	8 cut(s)	46, 128, 144, 201, 207, 355, 385, 485
DdeI	CTNAG	2 cut(s)	446, 467
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
DriI	GACNNNNNGTC	3 cut(s)	176, 370, 417
Eam1105I	GACNNNNNGTC	3 cut(s)	176, 370, 417
EciI	GGCGGA	1 cut(s)	327
Eco130I	CCWWGG	1 cut(s)	16
Eco31I	GGTCTC	1 cut(s)	84
Eco47I	GGWCC	5 cut(s)	170, 218, 364, 396, 401
Eco57I	CTGAAG	1 cut(s)	400
EcoT14I	CCWWGG	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	1 cut(s)	74
FaiI	YATR	2 cut(s)	72, 284
FatI	CATG	1 cut(s)	70
FauI	CCCGC	1 cut(s)	225
Fnu4HI	GCNGC	3 cut(s)	109, 383, 486
FokI	GGATG	1 cut(s)	116
Fsp4HI	GCNGC	3 cut(s)	109, 383, 486
GluI	GCNGC	3 cut(s)	109, 383, 486
GsuI	CTGGAG	1 cut(s)	62
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	1 cut(s)	399
Hin1I	GRCGYC	1 cut(s)	371
Hin1II	CATG	1 cut(s)	74
HinfI	GANTC	1 cut(s)	326
HpaII	CCGG	1 cut(s)	399
Hpy166II	GTNNAC	1 cut(s)	375
Hpy188I	TCNGA	1 cut(s)	364
Hpy188III	TCNNGA	4 cut(s)	41, 80, 163, 448
Hpy8I	GTNNAC	1 cut(s)	375
HpyAV	CCTTC	1 cut(s)	424
HpyCH4III	ACNGT	1 cut(s)	228
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	3 cut(s)	70, 382, 488
HpyF3I	CTNAG	2 cut(s)	446, 467
HpySE526I	ACGT	1 cut(s)	371
Hsp92I	GRCGYC	1 cut(s)	371
Hsp92II	CATG	1 cut(s)	74
Kzo9I	GATC	1 cut(s)	52
LmnI	GCTCC	1 cut(s)	43
Lsp1109I	GCAGC	3 cut(s)	120, 394, 472
MaeII	ACGT	1 cut(s)	371
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MboII	GAAGA	1 cut(s)	197
MluCI	AATT	2 cut(s)	101, 310
MnlI	CCTC	8 cut(s)	106, 161, 218, 235, 238, 271, 300, 444
MslI	CAYNNNNRTG	1 cut(s)	254
MspI	CCGG	1 cut(s)	399
NdeII	GATC	1 cut(s)	52
NlaIII	CATG	1 cut(s)	74
NlaIV	GGNNCC	1 cut(s)	22
PcsI	WCGNNNNNNNCGW	2 cut(s)	368, 478
PfeI	GAWTC	1 cut(s)	326
PflMI	CCANNNNNTGG	1 cut(s)	140
PkrI	GCNGC	3 cut(s)	110, 384, 487
PspN4I	GGNNCC	1 cut(s)	22
PspPI	GGNCC	5 cut(s)	170, 218, 364, 396, 401
RseI	CAYNNNNRTG	1 cut(s)	254
SatI	GCNGC	3 cut(s)	109, 383, 486
Sau3AI	GATC	1 cut(s)	52
Sau96I	GGNCC	5 cut(s)	170, 218, 364, 396, 401
SinI	GGWCC	5 cut(s)	170, 218, 364, 396, 401
SmiMI	CAYNNNNRTG	1 cut(s)	254
Sse9I	AATT	2 cut(s)	101, 310
SsiI	CCGC	3 cut(s)	158, 232, 338
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	1 cut(s)	228
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	2 cut(s)	51, 162
TasI	AATT	2 cut(s)	101, 310
TfiI	GAWTC	1 cut(s)	326
TscAI	CASTG	2 cut(s)	72, 101
TseI	GCWGC	3 cut(s)	108, 382, 485
TspRI	CASTG	2 cut(s)	72, 101
Van91I	CCANNNNNTGG	1 cut(s)	140
VpaK11BI	GGWCC	5 cut(s)	170, 218, 364, 396, 401
ZraI	GACGTC	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.