Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0015766

Physical Location & Seq

Genomic Coordinates Forward (+)

16315268 .. 16323370

Gene Structure 8103 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG159600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCGGTAATCTTCTTCTCCGATCTCGTCCCAAAGATGTTCTTGTTCAACCTTCGAACCCATCTCCACTTCTCTTCGGAGCTTATCGATCTTGTTGTGGCACTGCATGGCGGTCAATGGGAATTGGGCGGCGAGGGTGGTGGCGACGTCATCCCAGTTGGTGGCTTTGAGATTGGTGTGGTCGAGAGAGGACCACTTGTCCTTGAAGATGGAGATGAGGGCTTCGGCCTAGTTGTCCGTCCAGCACAGCGGCGGGGGGTTGAGGAGGACATTGGGGTGTGGGATAAGGAGAGAAGGGAGGGCATGAGGGTTGTGATGGTGGTGCCGGCTGGTAGATCAATATCGATCTGGGTGAGGGCGGTAAAGGTTAGGGGCCGGTCTGACCAGCTGGAGTCGGCTCAGGCTGCGACAGGAGATGCAGTCAACGTTCTGGGCAGACGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

16.15

Weight (kDa)

5.63

Isoelectric Point (pI)

46.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015766)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000002651 RLG00000011850 RLG00000019599 RLG00000023081 RLG00000029014 RLG00000029351
rosa_multiflora	Rmu_sc0001942.1_g000046
rosa_rugosa	Rorug05G0246800
rosa_samantha	Rh2AG212200 Rh5CG359900 Rh5DG159600 Rh5DG404900 Rh6AG221600 Rh6DG218800 Rh6DG450200 Rh7AG199700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
AccB1I	GGYRCC	1 cut(s)	322
AccB7I	CCANNNNNTGG	1 cut(s)	161
AciI	CCGC	6 cut(s)	5, 111, 129, 250, 253, 359
AclI	AACGTT	1 cut(s)	426
AcyI	GRCGYC	1 cut(s)	147
AfiI	CCNNNNNNNGG	1 cut(s)	161
AgsI	TTSAA	2 cut(s)	49, 206
AhdI	GACNNNNNGTC	1 cut(s)	197
AluBI	AGCT	2 cut(s)	82, 388
AluI	AGCT	2 cut(s)	82, 388
AoxI	GGCC	2 cut(s)	226, 373
ApeKI	GCWGC	1 cut(s)	404
AspS9I	GGNCC	2 cut(s)	191, 373
AsuHPI	GGTGA	1 cut(s)	364
AsuII	TTCGAA	1 cut(s)	55
AvaII	GGWCC	1 cut(s)	191
BanI	GGYRCC	1 cut(s)	322
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	3 cut(s)	69, 203, 310
BfaI	CTAG	1 cut(s)	230
BisI	GCNGC	3 cut(s)	130, 251, 405
BlsI	GCNGC	3 cut(s)	131, 252, 406
Bme18I	GGWCC	1 cut(s)	191
BmeRI	GACNNNNNGTC	1 cut(s)	197
BmgT120I	GGNCC	2 cut(s)	191, 373
BmiI	GGNNCC	2 cut(s)	324, 374
BmrI	ACTGGG	1 cut(s)	149
BmsI	GCATC	1 cut(s)	406
BmuI	ACTGGG	1 cut(s)	149
BpmI	CTGGAG	1 cut(s)	410
Bpu10I	CCTNAGC	1 cut(s)	399
Bpu14I	TTCGAA	1 cut(s)	55
Bsa29I	ATCGAT	2 cut(s)	87, 344
BsaBI	GATNNNNATC	1 cut(s)	340
BsaHI	GRCGYC	1 cut(s)	147
BsaXI	ACNNNNNCTCC	2 cut(s)	405, 435
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse118I	RCCGGY	2 cut(s)	325, 375
Bse1I	ACTGG	1 cut(s)	155
Bse8I	GATNNNNATC	1 cut(s)	340
BseCI	ATCGAT	2 cut(s)	87, 344
BseGI	GGATG	1 cut(s)	150
BseJI	GATNNNNATC	1 cut(s)	340
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	1 cut(s)	155
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	1 cut(s)	391
BshFI	GGCC	2 cut(s)	228, 375
BshNI	GGYRCC	1 cut(s)	322
BshVI	ATCGAT	2 cut(s)	87, 344
BsiSI	CCGG	2 cut(s)	326, 376
BslFI	GGGAC	1 cut(s)	14
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	14
BsnI	GGCC	2 cut(s)	228, 375
Bsp119I	TTCGAA	1 cut(s)	55
Bsp143I	GATC	4 cut(s)	22, 88, 335, 345
BspACI	CCGC	6 cut(s)	5, 111, 129, 250, 253, 359
BspANI	GGCC	2 cut(s)	228, 375
BspCNI	CTCAG	1 cut(s)	412
BspDI	ATCGAT	2 cut(s)	87, 344
BspLI	GGNNCC	2 cut(s)	324, 374
BspT104I	TTCGAA	1 cut(s)	55
BspT107I	GGYRCC	1 cut(s)	322
BsrFI	RCCGGY	2 cut(s)	325, 375
BsrI	ACTGG	1 cut(s)	155
BssAI	RCCGGY	2 cut(s)	325, 375
BssMI	GATC	4 cut(s)	22, 88, 335, 345
BssNI	GRCGYC	1 cut(s)	147
Bst6I	CTCTTC	1 cut(s)	79
BstACI	GRCGYC	1 cut(s)	147
BstBI	TTCGAA	1 cut(s)	55
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	1 cut(s)	399
BstF5I	GGATG	1 cut(s)	150
BstKTI	GATC	4 cut(s)	25, 91, 338, 348
BstMBI	GATC	4 cut(s)	22, 88, 335, 345
BstMWI	GCNNNNNNNGC	1 cut(s)	404
BstV1I	GCAGC	1 cut(s)	391
Bsu15I	ATCGAT	2 cut(s)	87, 344
BsuRI	GGCC	2 cut(s)	228, 375
BsuTUI	ATCGAT	2 cut(s)	87, 344
BtsCI	GGATG	1 cut(s)	150
BtsI	GCAGTG	1 cut(s)	101
BtsIMutI	CAGTG	1 cut(s)	101
Cac8I	GCNNGC	1 cut(s)	327
Cfr10I	RCCGGY	2 cut(s)	325, 375
Cfr13I	GGNCC	2 cut(s)	191, 373
ClaI	ATCGAT	2 cut(s)	87, 344
CviAII	CATG	2 cut(s)	107, 304
CviJI	RGCY	9 cut(s)	82, 165, 222, 228, 329, 375, 388, 398, 404
CviKI_1	RGCY	9 cut(s)	82, 165, 222, 228, 329, 375, 388, 398, 404
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	4 cut(s)	24, 90, 337, 347
DpnII	GATC	4 cut(s)	22, 88, 335, 345
DriI	GACNNNNNGTC	1 cut(s)	197
Eam1104I	CTCTTC	1 cut(s)	79
Eam1105I	GACNNNNNGTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	191
FaeI	CATG	2 cut(s)	110, 307
FaiI	YATR	2 cut(s)	108, 305
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
FaqI	GGGAC	1 cut(s)	14
FatI	CATG	2 cut(s)	106, 303
FauI	CCCGC	1 cut(s)	246
Fnu4HI	GCNGC	3 cut(s)	130, 251, 405
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	3 cut(s)	130, 251, 405
FspBI	CTAG	1 cut(s)	230
GluI	GCNGC	3 cut(s)	130, 251, 405
GsuI	CTGGAG	1 cut(s)	410
HaeIII	GGCC	2 cut(s)	228, 375
HapII	CCGG	2 cut(s)	326, 376
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	2 cut(s)	110, 307
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	1 cut(s)	392
HpaII	CCGG	2 cut(s)	326, 376
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188I	TCNGA	3 cut(s)	22, 79, 382
Hpy188III	TCNNGA	1 cut(s)	184
Hpy8I	GTNNAC	1 cut(s)	424
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	2 cut(s)	62, 288
HpyCH4IV	ACGT	2 cut(s)	147, 426
HpyCH4V	TGCA	2 cut(s)	106, 419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	404
HpyF3I	CTNAG	1 cut(s)	399
HpySE526I	ACGT	2 cut(s)	147, 426
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	2 cut(s)	110, 307
KroI	GCCGGC	1 cut(s)	325
KroNI	GCCGGC	1 cut(s)	327
Kzo9I	GATC	4 cut(s)	22, 88, 335, 345
LmnI	GCTCC	1 cut(s)	79
Lsp1109I	GCAGC	1 cut(s)	391
LweI	GCATC	1 cut(s)	406
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	2 cut(s)	147, 426
MalI	GATC	4 cut(s)	24, 90, 337, 347
MboI	GATC	4 cut(s)	22, 88, 335, 345
MboII	GAAGA	4 cut(s)	4, 7, 66, 218
MluCI	AATT	1 cut(s)	122
MlyI	GAGTC	1 cut(s)	401
MnlI	CCTC	8 cut(s)	127, 182, 211, 256, 259, 292, 300, 348
MroNI	GCCGGC	1 cut(s)	325
MslI	CAYNNNNRTG	1 cut(s)	275
MspA1I	CMGCKG	2 cut(s)	250, 388
MspI	CCGG	2 cut(s)	326, 376
MwoI	GCNNNNNNNGC	1 cut(s)	404
NaeI	GCCGGC	1 cut(s)	327
NdeII	GATC	4 cut(s)	22, 88, 335, 345
NgoMIV	GCCGGC	1 cut(s)	325
NlaIII	CATG	2 cut(s)	110, 307
NlaIV	GGNNCC	2 cut(s)	324, 374
NspV	TTCGAA	1 cut(s)	55
PdiI	GCCGGC	1 cut(s)	327
PflMI	CCANNNNNTGG	1 cut(s)	161
PkrI	GCNGC	3 cut(s)	131, 252, 406
PleI	GAGTC	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	400
Psp1406I	AACGTT	1 cut(s)	426
PspN4I	GGNNCC	2 cut(s)	324, 374
PspPI	GGNCC	2 cut(s)	191, 373
PvuII	CAGCTG	1 cut(s)	388
RseI	CAYNNNNRTG	1 cut(s)	275
SatI	GCNGC	3 cut(s)	130, 251, 405
Sau3AI	GATC	4 cut(s)	22, 88, 335, 345
Sau96I	GGNCC	2 cut(s)	191, 373
SchI	GAGTC	1 cut(s)	401
SetI	ASST	6 cut(s)	54, 84, 150, 369, 390, 429
SfaNI	GCATC	1 cut(s)	406
SfuI	TTCGAA	1 cut(s)	55
SinI	GGWCC	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	275
Sse9I	AATT	1 cut(s)	122
SsiI	CCGC	6 cut(s)	5, 111, 129, 250, 253, 359
SspMI	CTAG	1 cut(s)	230
TaiI	ACGT	2 cut(s)	150, 429
TaqI	TCGA	4 cut(s)	55, 87, 183, 344
TasI	AATT	1 cut(s)	122
TauI	GCSGC	2 cut(s)	132, 253
TscAI	CASTG	1 cut(s)	108
TseI	GCWGC	1 cut(s)	404
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	1 cut(s)	108
Van91I	CCANNNNNTGG	1 cut(s)	161
VpaK11BI	GGWCC	1 cut(s)	191
XspI	CTAG	1 cut(s)	230
ZraI	GACGTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.