RLG00000011850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015766
Physical Location & Seq
Reverse (-)
13313331 .. 13315857
2527 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011850

Sequence Viewer

Length: 306 bp
ATGTTCTTGTTCGACCTTCGAACCCATCTCCACTTCTCTCCGGAGCTTATCGATCTTGTTGTGGCACTGCATGGCAGTCTTGAATGGCGAGACCAGTGGGAATTGGGCGGCGAGGGTGGTTGCGACGTCATCCCAGTTGGTGCGGTCGAGAAAGGACCACTTGTCCTTGAAGATGGAGATGAGGGCTTCGGCCTCGTTGTAGGTCCAACATGGTGGCGGGGGGTTGAGGAGGACATTGGGGTGTGGGATAAGGAGAGAAGGGAGGGCATAGAAGTAATTACTATTAAGGATGACGATGATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.36

Weight (kDa)

4.2

Isoelectric Point (pI)

29.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 129
AccIII TCCGGA 1 cut(s) 40
AciI CCGC 3 cut(s) 108, 143, 217
AcyI GRCGYC 1 cut(s) 126
AgsI TTSAA 2 cut(s) 83, 170
AhdI GACNNNNNGTC 1 cut(s) 161
AluBI AGCT 1 cut(s) 46
AluI AGCT 1 cut(s) 46
Alw26I GTCTC 1 cut(s) 84
Aor13HI TCCGGA 1 cut(s) 40
AoxI GGCC 1 cut(s) 190
AspS9I GGNCC 2 cut(s) 155, 203
AsuII TTCGAA 1 cut(s) 19
AvaII GGWCC 2 cut(s) 155, 203
BccI CCATC 2 cut(s) 33, 167
BcoDI GTCTC 1 cut(s) 84
BisI GCNGC 1 cut(s) 109
BlsI GCNGC 1 cut(s) 110
Bme18I GGWCC 2 cut(s) 155, 203
BmeRI GACNNNNNGTC 1 cut(s) 161
BmgT120I GGNCC 2 cut(s) 155, 203
BmrI ACTGGG 1 cut(s) 128
BmuI ACTGGG 1 cut(s) 128
Bpu14I TTCGAA 1 cut(s) 19
Bsa29I ATCGAT 1 cut(s) 51
BsaHI GRCGYC 1 cut(s) 126
BsaI GGTCTC 1 cut(s) 84
BsaWI WCCGGW 1 cut(s) 40
Bse1I ACTGG 2 cut(s) 94, 134
BseAI TCCGGA 1 cut(s) 40
BseCI ATCGAT 1 cut(s) 51
BseGI GGATG 2 cut(s) 129, 295
BseNI ACTGG 2 cut(s) 94, 134
BseRI GAGGAG 1 cut(s) 242
Bsh1285I CGRYCG 1 cut(s) 147
BshFI GGCC 1 cut(s) 192
BshVI ATCGAT 1 cut(s) 51
BsiEI CGRYCG 1 cut(s) 147
BsiSI CCGG 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 84
BsnI GGCC 1 cut(s) 192
Bso31I GGTCTC 1 cut(s) 84
Bsp119I TTCGAA 1 cut(s) 19
Bsp13I TCCGGA 1 cut(s) 40
Bsp143I GATC 1 cut(s) 52
BspACI CCGC 3 cut(s) 108, 143, 217
BspANI GGCC 1 cut(s) 192
BspDI ATCGAT 1 cut(s) 51
BspEI TCCGGA 1 cut(s) 40
BspT104I TTCGAA 1 cut(s) 19
BspTNI GGTCTC 1 cut(s) 84
BsrI ACTGG 2 cut(s) 94, 134
BssMI GATC 1 cut(s) 52
BssNI GRCGYC 1 cut(s) 126
BstACI GRCGYC 1 cut(s) 126
BstBI TTCGAA 1 cut(s) 19
BstF5I GGATG 2 cut(s) 129, 295
BstKTI GATC 1 cut(s) 55
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 1 cut(s) 52
BstMCI CGRYCG 1 cut(s) 147
BstXI CCANNNNNNTGG 1 cut(s) 213
Bsu15I ATCGAT 1 cut(s) 51
BsuRI GGCC 1 cut(s) 192
BsuTUI ATCGAT 1 cut(s) 51
BtsCI GGATG 2 cut(s) 129, 295
BtsI GCAGTG 1 cut(s) 65
BtsIMutI CAGTG 2 cut(s) 65, 101
Cfr13I GGNCC 2 cut(s) 155, 203
ClaI ATCGAT 1 cut(s) 51
CviAII CATG 2 cut(s) 71, 210
CviJI RGCY 3 cut(s) 46, 186, 192
CviKI_1 RGCY 3 cut(s) 46, 186, 192
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
DriI GACNNNNNGTC 1 cut(s) 161
Eam1105I GACNNNNNGTC 1 cut(s) 161
Eco31I GGTCTC 1 cut(s) 84
Eco47I GGWCC 2 cut(s) 155, 203
FaeI CATG 2 cut(s) 74, 213
FaiI YATR 3 cut(s) 72, 211, 269
FalI AAGNNNNNCTT 2 cut(s) 144, 176
FatI CATG 2 cut(s) 70, 209
FauI CCCGC 1 cut(s) 210
Fnu4HI GCNGC 1 cut(s) 109
FokI GGATG 2 cut(s) 116, 302
Fsp4HI GCNGC 1 cut(s) 109
GluI GCNGC 1 cut(s) 109
HaeIII GGCC 1 cut(s) 192
HapII CCGG 1 cut(s) 41
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 2 cut(s) 74, 213
HpaII CCGG 1 cut(s) 41
Hpy188III TCNNGA 3 cut(s) 41, 80, 148
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 2 cut(s) 26, 252
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 1 cut(s) 70
HpySE526I ACGT 1 cut(s) 126
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 2 cut(s) 74, 213
Kpn2I TCCGGA 1 cut(s) 40
Kzo9I GATC 1 cut(s) 52
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 3 cut(s) 54, 107, 147
MaeII ACGT 1 cut(s) 126
MalI GATC 1 cut(s) 54
MboI GATC 1 cut(s) 52
MboII GAAGA 1 cut(s) 182
MluCI AATT 2 cut(s) 101, 276
MmeI TCCRAC 1 cut(s) 230
MnlI CCTC 6 cut(s) 106, 175, 203, 220, 223, 256
MroI TCCGGA 1 cut(s) 40
MseI TTAA 1 cut(s) 285
MslI CAYNNNNRTG 1 cut(s) 239
MspI CCGG 1 cut(s) 41
NdeII GATC 1 cut(s) 52
NlaIII CATG 2 cut(s) 74, 213
NspV TTCGAA 1 cut(s) 19
PkrI GCNGC 1 cut(s) 110
PspPI GGNCC 2 cut(s) 155, 203
RseI CAYNNNNRTG 1 cut(s) 239
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 1 cut(s) 109
Sau3AI GATC 1 cut(s) 52
Sau96I GGNCC 2 cut(s) 155, 203
SetI ASST 4 cut(s) 18, 48, 129, 205
SfuI TTCGAA 1 cut(s) 19
SinI GGWCC 2 cut(s) 155, 203
SmiMI CAYNNNNRTG 1 cut(s) 239
Sse9I AATT 2 cut(s) 101, 276
SsiI CCGC 3 cut(s) 108, 143, 217
TaiI ACGT 1 cut(s) 129
TaqI TCGA 4 cut(s) 12, 19, 51, 147
TasI AATT 2 cut(s) 101, 276
TauI GCSGC 1 cut(s) 111
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 2 cut(s) 72, 101
TspRI CASTG 2 cut(s) 72, 101
VpaK11BI GGWCC 2 cut(s) 155, 203
ZraI GACGTC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.